Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.IUSJ9T Arachis hypogaea HOM05D005911 ORTHO05D007565 5.4e-93 344.4 179 100.0
arahy.Tifrunner.gnm1.ann1.CA4G6V Arachis hypogaea HOM05D005911 ORTHO05D007565 1.0e-59 233.8 379 44.1
TPR.G20990 Trifolium pratense HOM05D005911 ORTHO05D007565 1.2e-47 193.7 389 37.3
Medtr4g084100 Medicago truncatula HOM05D005911 ORTHO05D007565 2.9e-46 189.1 380 37.4
Glyma.20G019800 Glycine max HOM05D005911 ORTHO05D007565 3.0e-43 179.1 370 36.8
Ca_18760_v3 Cicer arietinum L. HOM05D005911 ORTHO05D007565 5.1e-43 178.3 388 36.6
Phvul.007G233200 Phaseolus vulgaris HOM05D005911 ORTHO05D007565 7.4e-42 174.5 376 35.4
Lalb_Chr16g0385211 Lupinus albus HOM05D005911 ORTHO05D007565 6.3e-41 171.4 374 35.6
CiPaw.06G137300 Carya illinoinensis HOM05D005911 ORTHO05D007565 8.5e-38 161.0 377 34.2
TAR628G1003 Trochodendron aralioides HOM05D005911 ORTHO05D007565 2.1e-36 156.4 382 32.2
Prupe.8G101700 Prunus persica HOM05D005911 ORTHO05D007565 2.7e-36 156.0 372 32.8
Cfa005027 Carpinus fangiana HOM05D005911 ORTHO05D007565 4.7e-36 155.2 377 32.4
Atru.chr5.2957 Acer truncatum HOM05D005911 ORTHO05D007565 7.9e-36 154.5 380 32.9
Lj4g0018405 Lotus japonicus HOM05D005911 ORTHO05D007565 1.0e-35 154.1 367 34.1
FvH4_2g08380 Fragaria vesca HOM05D005911 ORTHO05D007565 2.3e-35 152.9 372 32.3
MD10G1080400 Malus domestica HOM05D005911 ORTHO05D007565 3.0e-35 152.5 393 31.6
FAN24G3462 Fragaria x ananassa HOM05D005911 ORTHO05D007565 3.9e-35 152.1 372 32.3
QL11p042848 Quercus lobata HOM05D005911 ORTHO05D007565 3.9e-35 152.1 378 32.3
RcHm_v2.0_Chr6g0263461 Rosa chinensis HOM05D005911 ORTHO05D007565 1.1e-34 150.6 373 32.7
TWI31G0066 Tripterygium wilfordii HOM05D005911 ORTHO05D007565 1.1e-34 150.6 381 31.5
GSVIVG01024153001 Vitis vinifera HOM05D005911 ORTHO05D007565 2.0e-34 149.8 392 31.4
Actinidia17824 Actinidia chinensis HOM05D005911 ORTHO05D007565 2.6e-34 149.4 374 32.6
FAN20G0571 Fragaria x ananassa HOM05D005911 ORTHO05D007565 2.6e-34 149.4 373 31.9
VMungo0720G1659 Vigna mungo HOM05D005911 ORTHO05D007565 3.3e-34 149.1 410 31.2
Manes.17G099400 Manihot esculenta HOM05D005911 ORTHO05D007565 4.4e-34 148.7 379 31.9
Potri.004G152100 Populus trichocarpa HOM05D005911 ORTHO05D007565 1.3e-33 147.1 379 31.7
Gohir.A04G104400 Gossypium hirsutum HOM05D005911 ORTHO05D007565 2.8e-33 146.0 324 33.3
Rhsim05G0076000 Rhododendron simsii HOM05D005911 ORTHO05D007565 1.8e-32 143.3 380 30.8
Ciclev10029888m.g Citrus clementina HOM05D005911 ORTHO05D007565 7.0e-32 141.4 95 76.8
Nn1g05068 Nelumbo nucifera HOM05D005911 ORTHO05D007565 1.2e-31 140.6 381 29.7
DCAR_003638 Daucus carota HOM05D005911 ORTHO05D007565 3.5e-31 139.0 376 30.6
Dinv42087 Davidia involucrata HOM05D005911 ORTHO05D007565 3.5e-31 139.0 374 31.3
CSS0013374 Camellia sinensis var. sinensis HOM05D005911 ORTHO05D007565 1.0e-30 137.5 380 30.0
Thecc.02G123100 Theobroma cacao HOM05D005911 ORTHO05D007565 1.3e-30 137.1 364 31.3
Cpa.g.sc62.118 Carica papaya HOM05D005911 ORTHO05D007565 2.9e-30 136.0 364 32.4
Migut.N01227 Erythranthe guttata HOM05D005911 ORTHO05D007565 6.5e-30 134.8 373 30.3
CDE02G3889 Ceratophyllum demersum HOM05D005911 ORTHO05D007565 8.5e-30 134.4 266 36.5
COL.COLO4_32449 Corchorus olitorius HOM05D005911 ORTHO05D007565 8.5e-30 134.4 363 30.9
Gohir.D04G144200 Gossypium hirsutum HOM05D005911 ORTHO05D007565 1.5e-29 133.7 370 30.0
Gorai.012G129800 Gossypium raimondii HOM05D005911 ORTHO05D007565 1.5e-29 133.7 370 30.0
FAN27G2671 Fragaria x ananassa HOM05D005911 ORTHO05D007565 1.9e-29 133.3 81 80.2
MBI16_g17455_MAGBIO Magnolia biondii HOM05D005911 ORTHO05D007565 2.5e-29 132.9 382 29.8
Aqoxy5G01675 Aquilegia oxysepala HOM05D005911 ORTHO05D007565 7.2e-29 131.3 376 29.8
SGA_v2.0_scaffold44G16630 Striga asiatica HOM05D005911 ORTHO05D007565 7.2e-29 131.3 84 78.6
unitig_22.g6840 Utricularia gibba HOM05D005911 ORTHO05D007565 7.2e-29 131.3 295 33.2
SalBow3G0191 Salvia bowleyana HOM05D005911 ORTHO05D007565 1.2e-28 130.6 86 70.9
Potri.004G151600 Populus trichocarpa HOM05D005911 ORTHO05D007565 2.7e-28 129.4 93 68.8
Lsat_1_v5_gn_7_89660 Lactuca sativa HOM05D005911 ORTHO05D007565 4.7e-28 128.6 339 31.9
Ciclev10013569m.g Citrus clementina HOM05D005911 ORTHO05D007565 6.1e-28 128.3 72 87.5
Psat3g133040 Pisum sativum HOM05D005911 ORTHO05D007565 8.0e-28 127.9 338 32.2
MSTRG.20102 Avicennia marina HOM05D005911 ORTHO05D007565 1.8e-27 126.7 370 28.6
Peaxi162Scf00016g00941 Petunia axillaris HOM05D005911 ORTHO05D007565 2.3e-27 126.3 369 29.0
PGR042G3082 Punica granatum HOM05D005911 ORTHO05D009502 2.3e-27 126.3 370 28.9
Duzib248G0238 Durio zibethinus HOM05D005911 ORTHO05D007565 5.2e-27 125.2 363 30.0
Sabra04G0100900 Salix brachista HOM05D005911 ORTHO05D007565 5.2e-27 125.2 407 28.5
CsaV3_7G023300 Cucumis sativus L. HOM05D005911 ORTHO05D007565 6.7e-27 124.8 374 28.9
ECA236G0345 Erigeron canadensis HOM05D005911 ORTHO05D007565 1.1e-26 124.0 101 62.4
ATR0733G150 Amborella trichopoda HOM05D005911 ORTHO05D007565 3.3e-26 122.5 83 68.7
ClCG02G005220 Citrullus lanatus HOM05D005911 ORTHO05D007565 1.3e-25 120.6 374 28.3
Cc02_g17800 Coffea canephora HOM05D005911 ORTHO05D007565 2.2e-25 119.8 388 28.6
Sopen01g051640 Solanum pennellii HOM05D005911 ORTHO05D007565 2.2e-25 119.8 367 27.8
Nitab4.5_0008989g0030 Nicotiana tabacum HOM05D005911 ORTHO05D007565 2.8e-25 119.4 363 28.4
Oeu014335.1 Olea europaea HOM05D005911 ORTHO05D007565 2.8e-25 119.4 360 29.7
Solyc01g109450.3 Solanum lycopersicum HOM05D005911 ORTHO05D007565 3.7e-25 119.0 367 28.1
Sed0023974 Sechium edule HOM05D005911 ORTHO05D007565 4.8e-25 118.6 374 27.5
PGSC0003DMG400025190 Solanum tuberosum HOM05D005911 ORTHO05D007565 4.8e-25 118.6 365 27.9
HanXRQChr16g0504971 Helianthus annuus HOM05D005911 ORTHO05D007565 8.2e-25 117.9 72 77.8
Nitab4.5_0001794g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 8.2e-25 117.9 367 28.1
CAN.G322.116 Capsicum annuum HOM05D005911 ORTHO05D007565 5.3e-24 115.2 367 27.2
SEGI_31956 Sequoiadendron giganteum HOM05D005911 ORTHO05D007565 5.3e-24 115.2 80 71.2
Lj9A367G53 Lonicera japonica HOM05D005911 ORTHO05D007565 9.1e-24 114.4 82 69.5
Ciclev10003801m.g Citrus clementina HOM05D005911 ORTHO05D007565 1.6e-23 113.6 70 82.9
Eucgr.G00468 Eucalyptus grandis HOM05D005911 ORTHO05D007565 1.6e-23 113.6 204 38.7
Hund00288 Selenicereus undatus HOM05D005911 ORTHO05D007565 5.9e-23 111.7 88 59.1
AUR62011353 Chenopodium quinoa HOM05D005911 ORTHO05D007565 1.1e-21 107.5 371 26.1
Ciclev10018182m.g Citrus clementina HOM05D005911 ORTHO05D007565 1.1e-21 107.5 78 74.4
Os05g0185700 Oryza sativa ssp. japonica HOM05D005911 ORTHO05D007565 4.2e-21 105.5 78 62.8
AUR62016709 Chenopodium quinoa HOM05D005911 ORTHO05D007565 7.2e-21 104.8 363 26.4
Haze_02358 Corylus avellana HOM05D005911 ORTHO05D009502 2.7e-20 102.8 73 72.6
EL10Ac9g21750 Beta vulgaris HOM05D005911 ORTHO05D007565 4.7e-20 102.1 373 25.5
Nitab4.5_0000776g0050 Nicotiana tabacum HOM05D005911 ORTHO05D007565 4.7e-20 102.1 72 65.3
MELO3C012560.2 Cucumis melo HOM05D005911 ORTHO05D007565 8.0e-20 101.3 378 27.2
FAN15G1485 Fragaria x ananassa HOM05D005911 ORTHO05D007565 8.0e-20 101.3 374 27.0
vmacro19435 Vaccinium macrocarpon HOM05D005911 ORTHO05D007565 8.0e-20 101.3 73 68.5
Lj9A367G52 Lonicera japonica HOM05D005911 ORTHO05D007565 3.0e-19 99.4 75 70.7
Ah.01g006180 Amaranthus hybridus HOM05D002934 ORTHO05D003937 5.2e-19 98.6 217 34.1
THA.LOC104804910 Tarenaya hassleriana HOM05D005911 ORTHO05D007565 1.5e-18 97.1 358 25.1
Hma1.2p1_0066F.1_g036670 Hydrangea macrophylla HOM05D005911 ORTHO05D007565 2.0e-18 96.7 71 69.0
Carub.0001s3853 Capsella rubella HOM05D005911 ORTHO05D007565 7.5e-18 94.7 354 25.4
Eucgr.G00462 Eucalyptus grandis HOM05D005911 ORTHO05D007565 7.5e-18 94.7 126 45.2
Eucgr.G01900 Eucalyptus grandis HOM05D005911 ORTHO05D007565 9.8e-18 94.4 72 68.1
Sp1g36210 Schrenkiella parvula HOM05D005911 ORTHO05D007565 9.8e-18 94.4 358 25.7
CAN.G149.23 Capsicum annuum HOM05D005911 ORTHO05D007565 1.3e-17 94.0 85 55.3
Thhalv10011559m.g Eutrema salsugineum HOM05D005911 ORTHO05D007565 1.1e-16 90.9 356 23.9
BcaB02g11057 Brassica carinata HOM05D005911 ORTHO05D007565 1.4e-16 90.5 72 56.9
AL1G56310 Arabidopsis lyrata HOM05D005911 ORTHO05D007565 1.8e-16 90.1 79 57.0
Zm00001eb346550 Zea mays HOM05D005911 ORTHO05D007565 1.8e-16 90.1 72 62.5
AL1G56510 Arabidopsis lyrata HOM05D003089 ORTHO05D003544 2.4e-16 89.7 73 61.6
Sc14g0001900 Simmondsia chinensis HOM05D005911 ORTHO05D007565 2.4e-16 89.7 78 59.0
AT1G49350 Arabidopsis thaliana HOM05D005911 ORTHO05D007565 3.1e-16 89.4 72 63.9
AagrBONN_evm.TU.Sc2ySwM_117.291 Anthoceros agrestis HOM05D005911 ORTHO05D007565 5.4e-16 88.6 73 58.9
A05p20720 Brassica napus HOM05D005911 ORTHO05D007565 5.4e-16 88.6 76 61.8
BraA05t20979Z Brassica rapa HOM05D005911 ORTHO05D007565 5.4e-16 88.6 76 61.8
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 7.0e-16 88.2 69 59.4
BcaC05g27521 Brassica carinata HOM05D005911 ORTHO05D007565 7.0e-16 88.2 86 57.0
C05p34970 Brassica napus HOM05D005911 ORTHO05D007565 7.0e-16 88.2 86 57.0
BolC5t32198H Brassica oleracea HOM05D005911 ORTHO05D007565 7.0e-16 88.2 86 57.0
BraA05t20973Z Brassica rapa HOM05D005911 ORTHO05D007565 7.0e-16 88.2 86 57.0
A05p20650 Brassica napus HOM05D005911 ORTHO05D007565 9.1e-16 87.8 86 57.0
Nitab4.5_0000443g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 9.1e-16 87.8 66 66.7
C05p34650 Brassica napus HOM05D005911 ORTHO05D007565 2.0e-15 86.7 86 57.0
BolC5t32220H Brassica oleracea HOM05D005911 ORTHO05D007565 4.5e-15 85.5 86 55.8
CARHR039340 Cardamine hirsuta HOM05D005911 ORTHO05D007565 7.7e-15 84.7 71 60.6
BcaC05g27500 Brassica carinata HOM05D005911 ORTHO05D007565 1.0e-14 84.3 71 54.9
Gohir.D04G144225 Gossypium hirsutum HOM05D005911 ORTHO05D007565 1.0e-14 84.3 76 59.2
Gorai.012G129900 Gossypium raimondii HOM05D005911 ORTHO05D007565 1.0e-14 84.3 76 59.2
CBR_g27891 Chara braunii HOM05D005911 ORTHO05D007565 1.7e-14 83.6 77 51.9
Pp3c15_14160 Physcomitrium patens HOM05D005911 ORTHO05D007565 2.9e-14 82.8 80 52.5
CARHR039370 Cardamine hirsuta HOM05D005911 ORTHO05D007565 5.0e-14 82.0 69 59.4
CARHR039360 Cardamine hirsuta HOM05D005911 ORTHO05D007565 9.4e-13 77.8 72 51.4
SGA_v2.0_scaffold55G19804 Striga asiatica HOM05D005911 ORTHO05D007565 2.1e-12 76.6 62 62.9
TAR371G0586 Trochodendron aralioides HOM05D005911 ORTHO05D007565 2.3e-11 73.2 58 63.8
Sc14g0001790 Simmondsia chinensis HOM05D005911 ORTHO05D007565 4.0e-11 72.4 69 49.3
Sc14g0001910 Simmondsia chinensis HOM05D005911 ORTHO05D007565 4.0e-11 72.4 69 49.3
TAR371G0927 Trochodendron aralioides HOM05D005911 ORTHO05D007565 5.7e-10 68.6 58 60.3
MCO11G507 Micromonas commoda HOM05D005911 ORTHO05D007565 9.8e-10 67.8 142 34.5
Gorai.008G153200 Gossypium raimondii HOM05D005911 ORTHO05D007565 2.4e-08 63.2 35 77.1
Mapoly0044s0080 Marchantia polymorpha HOM05D005911 ORTHO05D007565 3.5e-07 59.3 72 40.3
PRCOL_00000481 Prasinoderma coloniale HOM05D005911 ORTHO05D007565 1.3e-06 57.4 70 42.9
Cre17.g701100 Chlamydomonas reinhardtii HOM05D005911 ORTHO05D007565 3.8e-06 55.8 78 42.3
QL11p051325 Quercus lobata HOM05D005911 ORTHO05D007565 5.0e-06 55.5 42 71.4


User provided reference genes

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