Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.IRZ7G5 Arachis hypogaea HOM05D006913 ORTHO05D008720 1.4e-102 376.3 194 100.0
arahy.Tifrunner.gnm1.ann1.6PPK8V Arachis hypogaea HOM05D006913 ORTHO05D008720 5.3e-94 347.8 197 92.9
Lj1g0024926 Lotus japonicus HOM05D006913 ORTHO05D008720 1.4e-62 243.4 193 73.6
Medtr7g109970 Medicago truncatula HOM05D006913 ORTHO05D008720 1.0e-60 237.3 191 68.6
Glyma.19G219300 Glycine max HOM05D006913 ORTHO05D008720 2.2e-60 236.1 195 67.2
VMungo1383G0882 Vigna mungo HOM05D006913 ORTHO05D008720 1.5e-59 233.4 194 67.5
TPR.G4038 Trifolium pratense HOM05D006913 ORTHO05D008720 9.4e-59 230.7 197 67.0
Glyma.03G222100 Glycine max HOM05D006913 ORTHO05D008720 1.8e-57 226.5 213 62.4
Lalb_Chr04g0260061 Lupinus albus HOM05D006913 ORTHO05D008720 4.4e-56 221.9 197 65.5
Psat3g018680 Pisum sativum HOM05D006913 ORTHO05D008720 1.3e-55 220.3 189 65.1
Cfa004859 Carpinus fangiana HOM05D006913 ORTHO05D008720 5.4e-54 214.9 197 61.9
QL12p018506 Quercus lobata HOM05D006913 ORTHO05D008720 5.4e-54 214.9 184 67.4
Haze_05096 Corylus avellana HOM05D006913 ORTHO05D008720 9.2e-54 214.2 197 61.9
Dinv12109 Davidia involucrata HOM05D006913 ORTHO05D008720 4.5e-53 211.8 179 65.4
Thecc.01G320200 Theobroma cacao HOM05D006913 ORTHO05D008720 1.0e-52 210.7 170 69.4
TWI59G1195 Tripterygium wilfordii HOM05D006913 ORTHO05D008720 2.3e-52 209.5 183 65.6
CiPaw.07G121500 Carya illinoinensis HOM05D006913 ORTHO05D008720 2.9e-52 209.1 197 60.4
Prupe.3G005300 Prunus persica HOM05D006913 ORTHO05D008720 3.8e-52 208.8 193 63.7
RcHm_v2.0_Chr3g0486731 Rosa chinensis HOM05D006913 ORTHO05D008720 5.0e-52 208.4 198 61.1
FAN28G1862 Fragaria x ananassa HOM05D006913 ORTHO05D008720 8.6e-52 207.6 193 61.1
Nn3g21840 Nelumbo nucifera HOM05D006913 ORTHO05D008720 1.9e-51 206.5 195 62.6
Duzib138G1774 Durio zibethinus HOM05D006913 ORTHO05D008720 2.5e-51 206.1 201 62.7
TAR362G1022 Trochodendron aralioides HOM05D006913 ORTHO05D008720 2.5e-51 206.1 194 61.3
FvH4_1g26590 Fragaria vesca HOM05D006913 ORTHO05D008720 1.2e-50 203.8 153 71.2
MD17G1280100 Malus domestica HOM05D006913 ORTHO05D008720 1.6e-50 203.4 198 61.6
PSO170G2504 Papaver somniferum HOM05D006913 ORTHO05D008720 2.8e-50 202.6 192 56.8
Atru.chr5.924 Acer truncatum HOM05D006913 ORTHO05D008720 3.6e-50 202.2 193 61.1
CSS0007691 Camellia sinensis var. sinensis HOM05D006913 ORTHO05D008720 3.6e-50 202.2 170 66.5
Manes.01G231800 Manihot esculenta HOM05D006913 ORTHO05D008720 3.6e-50 202.2 143 74.1
Ciclev10022378m.g Citrus clementina HOM05D006913 ORTHO05D008720 4.7e-50 201.8 197 62.9
Migut.D00043 Erythranthe guttata HOM05D006913 ORTHO05D008720 4.7e-50 201.8 152 71.7
Potri.002G191300 Populus trichocarpa HOM05D006913 ORTHO05D008720 6.1e-50 201.4 148 70.3
Sed0008492 Sechium edule HOM05D006913 ORTHO05D008720 6.1e-50 201.4 146 76.7
PGSC0003DMG400007277 Solanum tuberosum HOM05D006913 ORTHO05D008720 8.0e-50 201.1 172 67.4
MELO3C023629.2 Cucumis melo HOM05D006913 ORTHO05D008720 1.0e-49 200.7 143 75.5
CsaV3_7G030270 Cucumis sativus L. HOM05D006913 ORTHO05D008720 1.0e-49 200.7 190 62.6
CSS0013168 Camellia sinensis var. sinensis HOM05D006913 ORTHO05D008720 1.4e-49 200.3 170 66.5
Cpa.g.c29544.2 Carica papaya HOM05D006913 ORTHO05D008720 2.3e-49 199.5 198 58.6
PSO724G1078 Papaver somniferum HOM05D006913 ORTHO05D008720 2.3e-49 199.5 187 58.3
Hma1.2p1_0408F.1_g146440 Hydrangea macrophylla HOM05D006913 ORTHO05D008720 6.8e-49 198.0 189 61.9
Nitab4.5_0003324g0110 Nicotiana tabacum HOM05D006913 ORTHO05D008720 6.8e-49 198.0 201 58.7
GSVIVG01028181001 Vitis vinifera HOM05D006913 ORTHO05D008720 6.8e-49 198.0 198 59.6
Solyc06g009400.3 Solanum lycopersicum HOM05D006913 ORTHO05D008720 8.9e-49 197.6 153 71.9
Sopen06g004130 Solanum pennellii HOM05D006913 ORTHO05D008720 8.9e-49 197.6 153 71.9
MD09G1287900 Malus domestica HOM05D006913 ORTHO05D008720 1.2e-48 197.2 183 61.7
SalBow3G0392 Salvia bowleyana HOM05D006913 ORTHO05D008720 1.2e-48 197.2 141 74.5
Nitab4.5_0000363g0020 Nicotiana tabacum HOM05D006913 ORTHO05D008720 2.0e-48 196.4 201 59.2
MSTRG.21716 Avicennia marina HOM05D006913 ORTHO05D008720 2.6e-48 196.1 149 72.5
Peaxi162Scf00058g00218 Petunia axillaris HOM05D006913 ORTHO05D008720 2.6e-48 196.1 147 74.1
AT4G01900 Arabidopsis thaliana HOM05D006913 ORTHO05D008720 5.7e-48 194.9 190 57.9
PGR083G1650 Punica granatum HOM05D006913 ORTHO05D008720 5.7e-48 194.9 197 59.4
THA.LOC104801315 Tarenaya hassleriana HOM05D006913 ORTHO05D008720 1.3e-47 193.7 149 69.8
Carub.0006s3531 Capsella rubella HOM05D006913 ORTHO05D008720 1.7e-47 193.4 176 60.8
Aqoxy5G02741 Aquilegia oxysepala HOM05D006913 ORTHO05D008720 2.2e-47 193.0 140 72.1
AL6G51370 Arabidopsis lyrata HOM05D006913 ORTHO05D008720 2.2e-47 193.0 190 57.9
Sc05g0000220 Simmondsia chinensis HOM05D006913 ORTHO05D008720 2.2e-47 193.0 138 73.9
CAN.G1280.40 Capsicum annuum HOM05D006913 ORTHO05D008720 4.9e-47 191.8 147 70.7
FAN26G0114 Fragaria x ananassa HOM05D006913 ORTHO05D008720 4.9e-47 191.8 210 55.7
MBI18_g09652_MAGBIO Magnolia biondii HOM05D006913 ORTHO05D008720 4.9e-47 191.8 150 69.3
Sed0005932 Sechium edule HOM05D006913 ORTHO05D008720 6.4e-47 191.4 139 76.3
ATR0693G068 Amborella trichopoda HOM05D006913 ORTHO05D008720 8.3e-47 191.0 140 72.1
Dinv33147 Davidia involucrata HOM05D006913 ORTHO05D008720 1.1e-46 190.7 179 63.1
HPP92_002654 Vanilla planifolia HOM05D006913 ORTHO05D008720 1.8e-46 189.9 130 77.7
Aa31LG5G1440 Aethionema arabicum HOM05D006913 ORTHO05D008720 3.2e-46 189.1 178 61.2
BraA03t12321Z Brassica rapa HOM05D006913 ORTHO05D008720 3.2e-46 189.1 177 61.6
MBI18_g11536_MAGBIO Magnolia biondii HOM05D006913 ORTHO05D008720 4.1e-46 188.7 150 68.7
FAN19G0677 Fragaria x ananassa HOM05D006913 ORTHO05D008720 5.4e-46 188.3 185 59.5
Os05g0133100 Oryza sativa ssp. japonica HOM05D006913 ORTHO05D008720 2.0e-45 186.4 133 74.4
A03p31400 Brassica napus HOM05D006913 ORTHO05D008720 2.7e-45 186.0 177 60.5
C03p38310 Brassica napus HOM05D006913 ORTHO05D008720 3.5e-45 185.7 174 60.9
Sp6g01770 Schrenkiella parvula HOM05D006913 ORTHO05D008720 4.6e-45 185.3 169 61.5
BcaB01g02398 Brassica carinata HOM05D006913 ORTHO05D008720 5.9e-45 184.9 177 60.5
BcaC01g06792 Brassica carinata HOM05D006913 ORTHO05D008720 5.9e-45 184.9 139 72.7
BolC3t16112H Brassica oleracea HOM05D006913 ORTHO05D008720 5.9e-45 184.9 139 72.7
Thhalv10028983m.g Eutrema salsugineum HOM05D006913 ORTHO05D008720 1.0e-44 184.1 176 60.2
Sabra02G0164300 Salix brachista HOM05D006913 ORTHO05D008720 1.0e-44 184.1 181 59.7
ClCG09G004810 Citrullus lanatus HOM05D006913 ORTHO05D008720 1.7e-44 183.3 170 62.9
BcaB01g02393 Brassica carinata HOM05D006913 ORTHO05D008720 3.9e-44 182.2 124 77.4
DCAR_002917 Daucus carota HOM05D006913 ORTHO05D008720 3.9e-44 182.2 141 68.8
CDE11G0810 Ceratophyllum demersum HOM05D006913 ORTHO05D008720 5.0e-44 181.8 181 56.4
CiPaw.08G086000 Carya illinoinensis HOM05D006913 ORTHO05D008720 6.6e-44 181.4 192 57.8
Nitab4.5_0000222g0190 Nicotiana tabacum HOM05D006913 ORTHO05D008720 6.6e-44 181.4 174 60.9
unitig_578.g16634 Utricularia gibba HOM05D006913 ORTHO05D008720 4.3e-43 178.7 128 72.7
Phvul.001G215500 Phaseolus vulgaris HOM05D006913 ORTHO05D008720 7.3e-43 177.9 143 68.5
Mapoly0061s0127 Marchantia polymorpha HOM05D006913 ORTHO05D008720 8.0e-42 174.5 128 70.3
Rhsim01G0292800 Rhododendron simsii HOM05D006913 ORTHO05D008720 1.8e-41 173.3 160 64.4
Pp3c4_15530 Physcomitrium patens HOM05D006913 ORTHO05D008720 1.2e-40 170.6 126 70.6
Cc01_g21970 Coffea canephora HOM05D006913 ORTHO05D008720 1.5e-40 170.2 117 75.2
Eucgr.H00899 Eucalyptus grandis HOM05D006913 ORTHO05D008720 2.0e-40 169.9 138 66.7
SGA_v2.0_scaffold80G25710 Striga asiatica HOM05D006913 ORTHO05D008720 6.6e-36 154.8 129 68.2
AagrBONN_evm.TU.Sc2ySwM_228.182 Anthoceros agrestis HOM05D006913 ORTHO05D008720 2.8e-34 149.4 119 66.4
vmacro15097 Vaccinium macrocarpon HOM05D006913 ORTHO05D008720 8.9e-33 144.4 217 48.4
AUR62024592 Chenopodium quinoa HOM05D006913 ORTHO05D008720 1.5e-32 143.7 170 53.5
Solyc01g015000.3 Solanum lycopersicum HOM05D006913 ORTHO05D008720 1.5e-32 143.7 105 75.2
COL.COLO4_23180 Corchorus olitorius HOM05D006913 ORTHO05D008720 2.0e-32 143.3 101 77.2
Ca_09230_v3 Cicer arietinum L. HOM05D006913 ORTHO05D008720 5.8e-32 141.7 97 78.4
SEGI_19322 Sequoiadendron giganteum HOM05D006913 ORTHO05D008720 1.3e-31 140.6 93 76.3
Lj1C13T3 Lonicera japonica HOM05D006913 ORTHO05D008720 7.8e-29 131.3 101 72.3
FAN23G2363 Fragaria x ananassa HOM05D000049 ORTHO05D000027 1.7e-28 130.2 99 70.7
Oeu038057.1 Olea europaea HOM05D006913 ORTHO05D008720 1.5e-27 127.1 160 51.9
SMO364G0946 Selaginella moellendorffii HOM05D006913 ORTHO05D008720 1.9e-27 126.7 99 70.7
Duzib211G0548 Durio zibethinus HOM05D006913 ORTHO05D008720 9.9e-24 114.4 98 65.3
Eucgr.L01805 Eucalyptus grandis HOM05D006913 ORTHO05D008720 1.1e-22 110.9 80 70.0
Hund09668 Selenicereus undatus HOM05D006913 ORTHO05D008720 1.4e-22 110.5 180 44.4
Cre07.g357350 Chlamydomonas reinhardtii HOM05D006913 ORTHO05D008720 1.2e-21 107.5 126 44.4
MCO04G045 Micromonas commoda HOM05D006913 ORTHO05D008720 1.2e-21 107.5 179 40.8
CARHR249910 Cardamine hirsuta HOM05D006913 ORTHO05D008720 1.0e-20 104.4 79 73.4
GSVIVG01010608001 Vitis vinifera HOM05D006913 ORTHO05D008720 4.3e-19 99.0 65 83.1
GSVIVG01037028001 Vitis vinifera HOM05D006913 ORTHO05D008720 4.3e-19 99.0 65 83.1
HPP92_027922 Vanilla planifolia HOM05D006913 ORTHO05D008720 4.7e-18 95.5 60 76.7
Nitab4.5_0001013g0020 Nicotiana tabacum HOM05D006913 ORTHO05D008720 6.2e-18 95.1 63 73.0
Hma1.2p1_3252F.1_g334540 Hydrangea macrophylla HOM05D006913 ORTHO05D008720 1.5e-16 90.5 136 46.3
HPP92_027923 Vanilla planifolia HOM05D006913 ORTHO05D008720 1.6e-13 80.5 61 73.8
Haze_27360 Corylus avellana HOM05D006913 ORTHO05D008720 1.4e-09 67.4 109 33.9
C09p01450 Brassica napus HOM05D006913 ORTHO05D008720 6.9e-09 65.1 39 79.5
BolC9t53077H Brassica oleracea HOM05D006913 ORTHO05D008720 6.9e-09 65.1 39 79.5


User provided reference genes

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