Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.IPM3U6 Arachis hypogaea HOM05D006150 ORTHO05D007745 6.0e-174 614.0 295 100.0
arahy.Tifrunner.gnm1.ann1.YY6LCE Arachis hypogaea HOM05D006150 ORTHO05D007745 1.1e-170 603.2 295 99.3
Glyma.05G066500 Glycine max HOM05D006150 ORTHO05D007745 3.6e-150 535.0 292 86.3
Glyma.17G148400 Glycine max HOM05D006150 ORTHO05D007745 7.9e-150 533.9 295 85.4
Phvul.003G225600 Phaseolus vulgaris HOM05D006150 ORTHO05D007745 1.0e-144 516.9 294 81.3
Lalb_Chr09g0329771 Lupinus albus HOM05D006150 ORTHO05D007745 6.5e-144 514.2 302 82.8
VMungo0251G1767 Vigna mungo HOM05D006150 ORTHO05D007745 1.1e-143 513.5 298 79.9
TPR.G25747 Trifolium pratense HOM05D006150 ORTHO05D007745 1.4e-141 506.5 295 80.7
Lj4g0002003 Lotus japonicus HOM05D006150 ORTHO05D007745 1.8e-141 506.1 298 81.9
Medtr4g099290 Medicago truncatula HOM05D006150 ORTHO05D007745 5.2e-141 504.6 299 81.6
Ca_22017_v3 Cicer arietinum L. HOM05D006150 ORTHO05D007745 5.7e-140 501.1 293 80.5
TAR636G1440 Trochodendron aralioides HOM05D006150 ORTHO05D007745 3.5e-137 491.9 293 78.2
Gohir.A12G212700 Gossypium hirsutum HOM05D006150 ORTHO05D007745 1.1e-135 486.9 297 77.8
Sopen08g026350 Solanum pennellii HOM05D006150 ORTHO05D007745 1.5e-135 486.5 297 75.8
Gorai.008G230800 Gossypium raimondii HOM05D006150 ORTHO05D007745 3.2e-135 485.3 297 77.4
COL.COLO4_07285 Corchorus olitorius HOM05D006150 ORTHO05D007745 5.5e-135 484.6 298 77.5
PGSC0003DMG400026243 Solanum tuberosum HOM05D006150 ORTHO05D007745 9.4e-135 483.8 297 75.1
CAN.G572.11 Capsicum annuum HOM05D006150 ORTHO05D007745 1.2e-134 483.4 293 76.8
Solyc08g077840.3 Solanum lycopersicum HOM05D006150 ORTHO05D007745 2.1e-134 482.6 297 75.1
Gohir.D12G215200 Gossypium hirsutum HOM05D006150 ORTHO05D007745 2.7e-134 482.3 297 76.8
CANSAT21G0710 Cannabis sativa HOM05D006150 ORTHO05D007745 1.0e-133 480.3 293 76.5
CSS0019555 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 3.0e-133 478.8 294 75.2
Eucgr.D02133 Eucalyptus grandis HOM05D006150 ORTHO05D007745 3.0e-133 478.8 295 76.3
Thecc.03G240100 Theobroma cacao HOM05D006150 ORTHO05D007745 3.0e-133 478.8 291 76.6
CARHR223610 Cardamine hirsuta HOM05D006150 ORTHO05D007745 8.8e-133 477.2 293 75.1
Duzib084G0008 Durio zibethinus HOM05D006150 ORTHO05D007745 1.5e-132 476.5 290 76.6
Cfa012327 Carpinus fangiana HOM05D006150 ORTHO05D007745 7.5e-132 474.2 296 76.4
EL10Ac5g12270 Beta vulgaris HOM05D006150 ORTHO05D007745 9.7e-132 473.8 293 76.1
Lj8A277T42 Lonicera japonica HOM05D006150 ORTHO05D007745 1.7e-131 473.0 286 75.5
THA.LOC104807929 Tarenaya hassleriana HOM05D006150 ORTHO05D007745 1.7e-131 473.0 292 74.3
Potri.003G083600 Populus trichocarpa HOM05D006150 ORTHO05D007745 2.2e-131 472.6 306 74.8
CiPaw.11G072300 Carya illinoinensis HOM05D006150 ORTHO05D007745 2.8e-131 472.2 296 74.0
C07p48520 Brassica napus HOM05D006150 ORTHO05D007745 3.7e-131 471.9 298 73.5
BolC7t45360H Brassica oleracea HOM05D006150 ORTHO05D007745 3.7e-131 471.9 298 73.5
TWI60G0542 Tripterygium wilfordii HOM05D006150 ORTHO05D007745 4.8e-131 471.5 292 74.7
MBI04_g13858_MAGBIO Magnolia biondii HOM05D006150 ORTHO05D007745 6.3e-131 471.1 290 74.8
Nn6g33757 Nelumbo nucifera HOM05D006150 ORTHO05D007745 6.3e-131 471.1 284 76.1
AL7G37660 Arabidopsis lyrata HOM05D006150 ORTHO05D007745 2.4e-130 469.2 293 74.4
BcaNung04656 Brassica carinata HOM05D006150 ORTHO05D007745 2.4e-130 469.2 298 73.2
C07p48460 Brassica napus HOM05D006150 ORTHO05D007745 2.4e-130 469.2 294 74.8
Rhsim07G0136400 Rhododendron simsii HOM05D006150 ORTHO05D007745 2.4e-130 469.2 293 75.8
MSTRG.6640 Avicennia marina HOM05D006150 ORTHO05D007745 3.1e-130 468.8 290 75.5
Carub.0007s2437 Capsella rubella HOM05D006150 ORTHO05D007745 3.1e-130 468.8 297 73.4
Manes.01G089000 Manihot esculenta HOM05D006150 ORTHO05D007745 3.1e-130 468.8 293 77.5
AT4G17050 Arabidopsis thaliana HOM05D006150 ORTHO05D007745 7.0e-130 467.6 295 73.9
BraA03t14117Z Brassica rapa HOM05D006150 ORTHO05D007745 7.0e-130 467.6 298 72.5
Ciclev10021365m.g Citrus clementina HOM05D006150 ORTHO05D007745 9.1e-130 467.2 293 74.1
PSO675G6476 Papaver somniferum HOM05D006150 ORTHO05D007745 9.1e-130 467.2 301 75.4
ECA234G2169 Erigeron canadensis HOM05D006150 ORTHO05D007745 1.2e-129 466.8 295 75.6
BcaC06g33538 Brassica carinata HOM05D006150 ORTHO05D007745 1.6e-129 466.5 299 73.2
PSO732G0290 Papaver somniferum HOM05D006150 ORTHO05D007745 2.0e-129 466.1 303 74.9
BolC1t02493H Brassica oleracea HOM05D006150 ORTHO05D007745 3.5e-129 465.3 291 74.2
Psat4g076080 Pisum sativum HOM05D006150 ORTHO05D007745 1.0e-128 463.8 270 80.7
Sp7g17140 Schrenkiella parvula HOM05D006150 ORTHO05D007745 1.3e-128 463.4 294 73.8
Sed0022790 Sechium edule HOM05D006150 ORTHO05D007745 1.3e-128 463.4 292 72.6
A03p50280 Brassica napus HOM05D006150 ORTHO05D007745 1.7e-128 463.0 298 72.1
Hma1.2p1_0570F.1_g180430 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 1.7e-128 463.0 288 75.0
RcHm_v2.0_Chr7g0205681 Rosa chinensis HOM05D006150 ORTHO05D007745 1.7e-128 463.0 292 76.7
MD04G1055500 Malus domestica HOM05D006150 ORTHO05D007745 2.2e-128 462.6 299 73.9
CsaV3_3G004750 Cucumis sativus L. HOM05D006150 ORTHO05D007745 2.9e-128 462.2 296 73.0
BraA01t01953Z Brassica rapa HOM05D006150 ORTHO05D007745 3.8e-128 461.8 299 72.6
PGR031G0533 Punica granatum HOM05D006150 ORTHO05D007745 3.8e-128 461.8 260 82.3
Haze_08363 Corylus avellana HOM05D006150 ORTHO05D007745 1.1e-127 460.3 321 70.4
Atru.chr9.1206 Acer truncatum HOM05D006150 ORTHO05D007745 4.2e-127 458.4 290 73.8
C07p48390 Brassica napus HOM05D006150 ORTHO05D007745 4.2e-127 458.4 293 74.1
BcaNung00130 Brassica carinata HOM05D006150 ORTHO05D007745 7.2e-127 457.6 292 74.3
ClCG10G005070 Citrullus lanatus HOM05D006150 ORTHO05D007745 7.2e-127 457.6 292 72.6
Cc08_g11330 Coffea canephora HOM05D006150 ORTHO05D007745 7.2e-127 457.6 306 71.2
FvH4_5g20400 Fragaria vesca HOM05D006150 ORTHO05D007745 1.2e-126 456.8 290 75.2
FAN04G1813 Fragaria x ananassa HOM05D006150 ORTHO05D007745 1.6e-126 456.4 296 74.7
Ah.12g053980 Amaranthus hybridus HOM05D006150 ORTHO05D007745 4.7e-126 454.9 294 72.1
HanXRQChr17g0534011 Helianthus annuus HOM05D006150 ORTHO05D007745 1.0e-125 453.8 297 74.1
SalBow7G3619 Salvia bowleyana HOM05D006150 ORTHO05D007745 4.0e-125 451.8 275 75.3
FAN08G0760 Fragaria x ananassa HOM05D006150 ORTHO05D007745 8.8e-125 450.7 290 75.5
Os07g0495000 Oryza sativa ssp. japonica HOM05D006150 ORTHO05D007745 8.8e-125 450.7 307 71.0
Nitab4.5_0000500g0240 Nicotiana tabacum HOM05D006150 ORTHO05D007745 1.3e-123 446.8 301 72.4
Nitab4.5_0009451g0030 Nicotiana tabacum HOM05D006150 ORTHO05D007745 2.8e-123 445.7 303 71.3
Zm00001eb322060 Zea mays HOM05D006150 ORTHO05D007745 3.7e-123 445.3 281 73.0
ATR0665G013 Amborella trichopoda HOM05D006150 ORTHO05D007745 6.3e-123 444.5 294 71.4
Aqoxy5G02622 Aquilegia oxysepala HOM05D006150 ORTHO05D007745 1.8e-122 443.0 291 73.5
DCAR_008330 Daucus carota HOM05D006150 ORTHO05D007745 1.8e-122 443.0 295 71.5
PSO732G0039 Papaver somniferum HOM05D006150 ORTHO05D007745 3.1e-122 442.2 294 72.1
CDE12G0966 Ceratophyllum demersum HOM05D006150 ORTHO05D007745 4.1e-122 441.8 295 70.2
unitig_746.g26644 Utricularia gibba HOM05D006150 ORTHO05D007745 9.1e-122 440.7 293 69.6
A01p20260 Brassica napus HOM05D006150 ORTHO05D007745 1.0e-120 437.2 285 72.3
QL12p008732 Quercus lobata HOM05D006150 ORTHO05D007745 1.6e-118 429.9 399 56.4
Peaxi162Scf00301g00519 Petunia axillaris HOM05D006150 ORTHO05D007745 8.9e-117 424.1 287 70.0
HPP92_025744 Vanilla planifolia HOM05D006150 ORTHO05D007745 5.7e-116 421.4 292 69.9
Thhalv10026866m.g Eutrema salsugineum HOM05D006150 ORTHO05D007745 2.2e-115 419.5 305 68.2
SEGI_33649 Sequoiadendron giganteum HOM05D006150 ORTHO05D007745 3.1e-114 415.6 287 69.3
BcaC09g50439 Brassica carinata HOM05D006150 ORTHO05D007745 1.4e-109 400.2 292 66.4
C01p25410 Brassica napus HOM05D006150 ORTHO05D007745 1.4e-109 400.2 292 66.4
Aa31LG2G13130 Aethionema arabicum HOM05D006150 ORTHO05D007745 5.2e-109 398.3 319 61.4
vmacro00832 Vaccinium macrocarpon HOM05D006150 ORTHO05D007745 8.9e-109 397.5 296 65.9
Dinv28876 Davidia involucrata HOM05D006150 ORTHO05D007745 3.2e-106 389.0 267 69.3
Actinidia02195 Actinidia chinensis HOM05D006150 ORTHO05D007745 3.5e-105 385.6 257 70.8
Sc01g0007980 Simmondsia chinensis HOM05D006150 ORTHO05D007745 3.0e-104 382.5 246 73.2
Pp3c9_12580 Physcomitrium patens HOM05D006150 ORTHO05D007745 3.1e-101 372.5 295 60.7
Mapoly0072s0097 Marchantia polymorpha HOM05D006150 ORTHO05D007745 1.2e-100 370.5 258 65.1
Prupe.5G055300 Prunus persica HOM05D006150 ORTHO05D007745 1.4e-98 363.6 212 79.2
AagrBONN_evm.TU.Sc2ySwM_228.2274 Anthoceros agrestis HOM05D006150 ORTHO05D007745 3.2e-98 362.5 257 66.9
Oeu012348.1 Olea europaea HOM05D006150 ORTHO05D007745 7.0e-98 361.3 210 79.5
AUR62007167 Chenopodium quinoa HOM05D006150 ORTHO05D007745 1.1e-93 347.4 202 79.2
AUR62018839 Chenopodium quinoa HOM05D006150 ORTHO05D007745 1.8e-93 346.7 202 78.2
SGA_v2.0_scaffold181G39680 Striga asiatica HOM05D006150 ORTHO05D007745 5.8e-92 341.7 242 70.2
GSVIVG01003685001 Vitis vinifera HOM05D006150 ORTHO05D007745 1.3e-91 340.5 279 61.6
Lsat_1_v5_gn_3_15361 Lactuca sativa HOM05D006150 ORTHO05D007745 1.5e-84 317.0 250 64.0
MCO07G379 Micromonas commoda HOM05D006150 ORTHO05D007745 2.8e-70 269.6 265 49.1
Actinidia25909 Actinidia chinensis HOM05D006150 ORTHO05D007745 4.0e-69 265.8 293 50.9
Cre06.g290000 Chlamydomonas reinhardtii HOM05D006150 ORTHO05D007745 1.7e-67 260.4 256 50.0
Potri.001G150800 Populus trichocarpa HOM05D006150 ORTHO05D007745 2.7e-65 253.1 195 64.6
MD06G1047100 Malus domestica HOM05D006150 ORTHO05D007745 3.4e-60 236.1 263 49.4
MCO04G282 Micromonas commoda HOM05D006150 ORTHO05D007745 1.1e-58 231.1 263 46.4
Sabra01G0120800 Salix brachista HOM05D006150 ORTHO05D007745 6.5e-51 205.3 173 61.3
MELO3C014174.2 Cucumis melo HOM05D006150 ORTHO05D007745 1.3e-48 197.6 285 43.2
Hma1.2p1_0570F.1_g180440 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 9.7e-47 191.4 127 70.9
FAN18G0603 Fragaria x ananassa HOM05D006150 ORTHO05D007745 6.3e-46 188.7 143 65.0
CSS0048254 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 7.9e-41 171.8 97 82.5
Sabra01G0120600 Salix brachista HOM05D006150 ORTHO05D007745 9.1e-37 158.3 162 53.7
PSO717G0125 Papaver somniferum HOM05D006150 ORTHO05D007745 7.9e-33 145.2 98 71.4
Cpa.g.sc98.38 Carica papaya HOM05D006150 ORTHO05D007745 1.4e-32 144.4 81 79.0
CBR_g38093 Chara braunii HOM05D006150 ORTHO05D007745 1.2e-28 131.3 66 83.3
BcaC01g03436 Brassica carinata HOM05D006150 ORTHO05D007745 1.5e-28 131.0 101 61.4
GSVIVG01021810001 Vitis vinifera HOM05D006150 ORTHO05D007745 1.3e-14 84.7 70 57.1
Cpa.g.sc98.35 Carica papaya HOM05D006150 ORTHO05D007745 3.1e-13 80.1 56 66.1
Oeu040463.1 Olea europaea HOM05D001574 ORTHO05D000708 5.0e-11 72.8 57 61.4
Lsat_1_v5_gn_2_23540 Lactuca sativa HOM05D002379 ORTHO05D003469 6.8e-08 62.4 42 61.9
Lsat_1_v5_gn_8_14120 Lactuca sativa HOM05D002379 ORTHO05D021531 6.8e-08 62.4 42 61.9
Lsat_1_v5_gn_9_81181 Lactuca sativa HOM05D002379 ORTHO05D003469 6.8e-08 62.4 42 61.9
Lsat_1_v5_gn_6_74120 Lactuca sativa HOM05D006150 ORTHO05D233887 9.8e-07 58.5 33 72.7
MELO3C000773.2 Cucumis melo HOM05D006150 ORTHO05D007745 2.8e-06 57.0 40 67.5


User provided reference genes

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