Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.IJ2E5N Arachis hypogaea HOM05D006039 ORTHO05D006797 2.8e-211 738.4 389 100.0
arahy.Tifrunner.gnm1.ann1.CQR7QS Arachis hypogaea HOM05D006039 ORTHO05D006797 4.3e-196 688.0 428 86.9
Lj3g0020392 Lotus japonicus HOM05D006039 ORTHO05D006797 1.6e-113 413.7 443 58.9
Medtr2g098330 Medicago truncatula HOM05D006039 ORTHO05D006797 6.2e-110 401.7 450 55.6
Lalb_Chr22g0352291 Lupinus albus HOM05D006039 ORTHO05D006797 6.9e-109 398.3 430 58.6
Lalb_Chr24g0396971 Lupinus albus HOM05D006039 ORTHO05D006797 5.4e-106 388.7 424 57.5
Psat5g288280 Pisum sativum HOM05D006039 ORTHO05D006797 1.7e-104 383.6 504 50.4
Glyma.15G032500 Glycine max HOM05D006039 ORTHO05D006797 3.9e-104 382.5 459 53.4
VMungo1080G1590 Vigna mungo HOM05D006039 ORTHO05D006797 1.8e-101 373.6 455 53.0
Glyma.13G341800 Glycine max HOM05D006039 ORTHO05D006797 2.4e-98 363.2 463 51.2
Phvul.L011043 Phaseolus vulgaris HOM05D006039 ORTHO05D006797 1.6e-97 360.5 431 53.1
QL01p005703 Quercus lobata HOM05D006039 ORTHO05D006797 3.4e-92 342.8 461 49.2
Haze_23073 Corylus avellana HOM05D006039 ORTHO05D006797 2.9e-91 339.7 472 47.2
Potri.001G017100 Populus trichocarpa HOM05D006039 ORTHO05D006797 1.6e-89 334.0 451 47.9
TWI32G0154 Tripterygium wilfordii HOM05D006039 ORTHO05D006797 4.6e-89 332.4 437 50.1
Potri.003G207400 Populus trichocarpa HOM05D006039 ORTHO05D006797 3.9e-88 329.3 454 48.9
Atru.chr3.2554 Acer truncatum HOM05D006039 ORTHO05D006797 1.5e-87 327.4 455 49.2
Sabra01G0012000 Salix brachista HOM05D006039 ORTHO05D006797 3.1e-85 319.7 450 47.3
CiPaw.14G122300 Carya illinoinensis HOM05D006039 ORTHO05D006797 5.3e-85 318.9 390 51.8
Manes.06G167800 Manihot esculenta HOM05D006039 ORTHO05D006797 1.5e-84 317.4 451 48.8
CANSAT54G2219 Cannabis sativa HOM05D006039 ORTHO05D006797 1.4e-82 310.8 447 46.3
Thecc.09G226300 Theobroma cacao HOM05D006039 ORTHO05D006797 3.2e-82 309.7 444 46.4
Prupe.6G022100 Prunus persica HOM05D006039 ORTHO05D006797 4.2e-82 309.3 399 49.1
Cpa.g.sc84.90 Carica papaya HOM05D006039 ORTHO05D006797 1.2e-81 307.8 454 47.6
Manes.14G013400 Manihot esculenta HOM05D006039 ORTHO05D006797 1.8e-80 303.9 450 44.7
Eucgr.B03667 Eucalyptus grandis HOM05D006039 ORTHO05D006797 2.3e-80 303.5 451 45.7
Ca_01279_v3 Cicer arietinum L. HOM05D006039 ORTHO05D006797 9.7e-79 298.1 336 55.1
COL.COLO4_24829 Corchorus olitorius HOM05D006039 ORTHO05D006797 2.8e-78 296.6 435 45.7
Dinv36292 Davidia involucrata HOM05D006039 ORTHO05D006797 8.2e-78 295.0 451 45.9
Duzib168G2100 Durio zibethinus HOM05D006039 ORTHO05D006797 1.1e-77 294.7 431 46.2
Ciclev10014934m.g Citrus clementina HOM05D006039 ORTHO05D006797 3.1e-77 293.1 495 41.6
CSS0020882 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 2.2e-75 287.0 437 45.5
Sc16g0011650 Simmondsia chinensis HOM05D006039 ORTHO05D006797 6.5e-75 285.4 457 44.0
CSS0048119 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 1.1e-74 284.6 437 45.3
Sed0010144 Sechium edule HOM05D006039 ORTHO05D006797 1.4e-74 284.3 455 43.7
MD11G1028000 Malus domestica HOM05D006039 ORTHO05D006797 9.4e-74 281.6 478 42.7
Duzib150G0354 Durio zibethinus HOM05D006039 ORTHO05D006797 2.1e-73 280.4 431 46.2
Gohir.A13G216000 Gossypium hirsutum HOM05D006039 ORTHO05D006797 7.9e-73 278.5 410 47.8
RcHm_v2.0_Chr5g0077351 Rosa chinensis HOM05D006039 ORTHO05D006797 2.3e-72 276.9 430 44.0
FAN25G3739 Fragaria x ananassa HOM05D006039 ORTHO05D006797 5.1e-72 275.8 380 45.8
TAR623G0385 Trochodendron aralioides HOM05D006039 ORTHO05D006797 1.1e-71 274.6 466 43.6
FAN21G1726 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.5e-71 274.2 381 45.9
Peaxi162Scf00839g00234 Petunia axillaris HOM05D006039 ORTHO05D006797 2.5e-71 273.5 394 47.7
ClCG02G023440 Citrullus lanatus HOM05D006039 ORTHO05D006797 5.7e-71 272.3 466 41.6
THA.LOC104804971 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 5.7e-71 272.3 444 42.3
GSVIVG01025314001 Vitis vinifera HOM05D006039 ORTHO05D006797 4.8e-70 269.2 381 49.6
THA.LOC104799094 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 1.4e-69 267.7 442 42.3
FAN11G0272 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.8e-69 267.3 368 45.9
Gohir.D13G219700 Gossypium hirsutum HOM05D006039 ORTHO05D006797 1.8e-69 267.3 401 46.9
CsaV3_4G024070 Cucumis sativus L. HOM05D006039 ORTHO05D006797 3.1e-69 266.5 463 41.0
MELO3C014616.2 Cucumis melo HOM05D006039 ORTHO05D006797 5.3e-69 265.8 472 41.3
Lj1C361T2 Lonicera japonica HOM05D006039 ORTHO05D006797 2.0e-68 263.8 456 43.4
Thhalv10013519m.g Eutrema salsugineum HOM05D006039 ORTHO05D006797 3.4e-68 263.1 445 43.8
PGR102G2927 Punica granatum HOM05D006039 ORTHO05D006797 4.5e-68 262.7 447 40.9
Aqoxy3G00443 Aquilegia oxysepala HOM05D006039 ORTHO05D006797 7.7e-68 261.9 452 41.8
Actinidia06328 Actinidia chinensis HOM05D006039 ORTHO05D006797 1.0e-67 261.5 431 46.2
AL6G23500 Arabidopsis lyrata HOM05D006039 ORTHO05D006797 2.2e-67 260.4 448 42.9
Cfa009721 Carpinus fangiana HOM05D006039 ORTHO05D006797 3.8e-67 259.6 311 50.2
Solyc11g056640.3 Solanum lycopersicum HOM05D006039 ORTHO05D006797 3.8e-67 259.6 424 44.1
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 5.0e-67 259.2 435 43.7
AT5G12930 Arabidopsis thaliana HOM05D006039 ORTHO05D006797 1.1e-66 258.1 383 46.2
CARHR200520 Cardamine hirsuta HOM05D006039 ORTHO05D006797 1.1e-66 258.1 456 40.6
Carub.0006s1111 Capsella rubella HOM05D006039 ORTHO05D006797 7.2e-66 255.4 450 44.4
Rhsim01G0190000 Rhododendron simsii HOM05D006039 ORTHO05D006797 1.2e-65 254.6 465 42.2
Sp6g31030 Schrenkiella parvula HOM05D006039 ORTHO05D006797 2.1e-65 253.8 401 42.9
MBI01_g36435_MAGBIO Magnolia biondii HOM05D006039 ORTHO05D006797 3.9e-64 249.6 452 41.2
Nitab4.5_0000175g0040 Nicotiana tabacum HOM05D006039 ORTHO05D006797 6.7e-64 248.8 425 44.2
FAN16G1487 Fragaria x ananassa HOM05D006039 ORTHO05D006797 8.8e-64 248.4 336 46.7
Ah.06g193560 Amaranthus hybridus HOM05D006039 ORTHO05D006797 2.6e-63 246.9 477 38.8
Nitab4.5_0002278g0050 Nicotiana tabacum HOM05D006039 ORTHO05D006797 2.6e-63 246.9 430 44.0
EL10Ac4g10308 Beta vulgaris HOM05D006039 ORTHO05D006797 3.3e-63 246.5 454 40.3
Oeu014066.1 Olea europaea HOM05D006039 ORTHO05D006797 2.2e-62 243.8 392 45.9
TPR.G6898 Trifolium pratense HOM05D006039 ORTHO05D006797 3.5e-60 236.5 362 47.0
SalBow4G0075 Salvia bowleyana HOM05D006039 ORTHO05D006797 1.0e-59 235.0 429 43.1
SalBow4G2759 Salvia bowleyana HOM05D006039 ORTHO05D006797 1.0e-59 235.0 429 43.1
BraA03t09909Z Brassica rapa HOM05D006039 ORTHO05D006797 1.3e-59 234.6 452 40.7
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.3e-59 234.6 326 46.3
Cc01_g04400 Coffea canephora HOM05D006039 ORTHO05D006797 1.7e-59 234.2 438 41.3
PSO339G2813 Papaver somniferum HOM05D006039 ORTHO05D006797 1.7e-59 234.2 453 39.3
Nn7g36093 Nelumbo nucifera HOM05D006039 ORTHO05D006797 1.5e-58 231.1 435 39.8
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 1.9e-58 230.7 431 41.8
MSTRG.17577 Avicennia marina HOM05D006039 ORTHO05D006797 2.5e-58 230.3 402 43.8
A03p05700 Brassica napus HOM05D006039 ORTHO05D006797 5.5e-58 229.2 438 41.1
BolC3t13172H Brassica oleracea HOM05D006039 ORTHO05D006797 1.2e-57 228.0 451 39.5
PSO384G3161 Papaver somniferum HOM05D006039 ORTHO05D006797 1.2e-57 228.0 473 37.4
vmacro12713 Vaccinium macrocarpon HOM05D006039 ORTHO05D006797 4.7e-57 226.1 411 41.4
A02p01580 Brassica napus HOM05D006039 ORTHO05D006797 1.1e-55 221.5 436 40.6
SGA_v2.0_scaffold247G44833 Striga asiatica HOM05D006039 ORTHO05D006797 1.5e-55 221.1 446 40.1
BcaNung03603 Brassica carinata HOM05D006039 ORTHO05D006797 4.4e-55 219.5 456 39.5
ECA233G1597 Erigeron canadensis HOM05D006039 ORTHO05D006797 5.7e-55 219.2 432 40.3
HanXRQChr13g0403991 Helianthus annuus HOM05D006039 ORTHO05D006797 7.5e-55 218.8 430 39.5
BcaB01g05389 Brassica carinata HOM05D006039 ORTHO05D006797 4.8e-54 216.1 390 41.5
C03p06660 Brassica napus HOM05D006039 ORTHO05D006797 4.1e-53 213.0 398 40.7
Migut.N02301 Erythranthe guttata HOM05D006039 ORTHO05D006797 2.6e-52 210.3 434 37.6
Potri.003G207500 Populus trichocarpa HOM05D006039 ORTHO05D006797 2.2e-51 207.2 430 37.7
DCAR_002046 Daucus carota HOM05D006039 ORTHO05D006797 8.5e-51 205.3 412 39.3
BraA02t05138Z Brassica rapa HOM05D006039 ORTHO05D006797 1.9e-50 204.1 439 38.3
Sabra03G0153000 Salix brachista HOM05D006039 ORTHO05D006797 9.4e-50 201.8 441 37.9
Migut.D00567 Erythranthe guttata HOM05D006039 ORTHO05D006797 4.7e-49 199.5 414 39.4
Lsat_1_v5_gn_1_67181 Lactuca sativa HOM05D006039 ORTHO05D006797 8.0e-49 198.7 435 38.2
MSTRG.12478 Avicennia marina HOM05D006039 ORTHO05D006797 1.0e-48 198.4 447 37.6
Os09g0488600 Oryza sativa ssp. japonica HOM05D006039 ORTHO05D006797 2.0e-47 194.1 427 36.8
AUR62019256 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.1e-45 188.3 466 34.8
Haze_23701 Corylus avellana HOM05D006039 ORTHO05D006797 9.1e-45 185.3 269 46.8
FvH4_3g43290 Fragaria vesca HOM05D006039 ORTHO05D006797 2.0e-44 184.1 290 42.4
Haze_23656 Corylus avellana HOM05D006039 ORTHO05D006797 1.7e-43 181.0 314 45.2
BcaNung01186 Brassica carinata HOM05D006039 ORTHO05D006797 6.5e-43 179.1 430 36.0
BolC2t06525H Brassica oleracea HOM05D006039 ORTHO05D006797 6.5e-43 179.1 430 36.0
TPR.G377 Trifolium pratense HOM05D006039 ORTHO05D006797 2.5e-42 177.2 140 67.1
HPP92_015767 Vanilla planifolia HOM05D006039 ORTHO05D006797 5.5e-42 176.0 454 33.3
C02p05800 Brassica napus HOM05D006039 ORTHO05D006797 2.7e-41 173.7 437 35.5
Nn2g15509 Nelumbo nucifera HOM05D006039 ORTHO05D006797 2.3e-40 170.6 342 39.5
Cfa009719 Carpinus fangiana HOM05D006039 ORTHO05D006797 2.6e-39 167.2 225 50.2
Hund07543 Selenicereus undatus HOM05D006039 ORTHO05D006797 3.4e-39 166.8 289 38.4
Haze_23655 Corylus avellana HOM05D006039 ORTHO05D006797 2.2e-38 164.1 283 41.7
AUR62005725 Chenopodium quinoa HOM05D006039 ORTHO05D006797 2.8e-38 163.7 456 32.0
ATR0815G050 Amborella trichopoda HOM05D006039 ORTHO05D006797 1.1e-34 151.8 430 35.6
Haze_23654 Corylus avellana HOM05D006039 ORTHO05D006797 2.5e-34 150.6 237 42.6
Haze_23698 Corylus avellana HOM05D006039 ORTHO05D006797 2.8e-33 147.1 197 44.2
Haze_23653 Corylus avellana HOM05D006039 ORTHO05D006797 2.3e-32 144.1 253 40.3
Zm00001eb101890 Zea mays HOM05D006039 ORTHO05D006797 8.3e-30 135.6 304 34.2
MELO3C003056.2 Cucumis melo HOM05D006039 ORTHO05D006797 7.0e-29 132.5 146 52.7
AUR62043683 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.2e-28 131.7 234 43.2
CDE06G0903 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 8.0e-25 119.0 182 43.4
Haze_23699 Corylus avellana HOM05D006039 ORTHO05D006797 3.4e-23 113.6 170 40.6
AUR62000084 Chenopodium quinoa HOM05D006039 ORTHO05D000067 1.4e-21 108.2 162 43.2
Hund07487 Selenicereus undatus HOM05D000288 ORTHO05D006797 1.2e-20 105.1 183 45.4
Hund07491 Selenicereus undatus HOM05D006039 ORTHO05D006797 1.6e-20 104.8 160 49.4
AUR62043578 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.5e-18 98.2 265 30.6
SHI30498 Sapria himalayana HOM05D006039 ORTHO05D000001 1.1e-16 92.0 423 26.5
arahy.Tifrunner.gnm1.ann1.KUP0VV Arachis hypogaea HOM05D000351 ORTHO05D001519 9.8e-15 85.5 47 91.5
arahy.Tifrunner.gnm1.ann1.6S8GSB Arachis hypogaea HOM05D006491 ORTHO05D008412 2.2e-14 84.3 71 66.2
Lsat_1_v5_gn_1_67161 Lactuca sativa HOM05D006039 ORTHO05D006797 4.1e-13 80.1 83 56.6
AUR62014261 Chenopodium quinoa HOM05D006039 ORTHO05D006797 7.1e-13 79.3 117 43.6
Actinidia39388 Actinidia chinensis HOM05D006039 ORTHO05D006797 1.3e-11 75.1 173 35.3
Pp3c6_9630 Physcomitrium patens HOM05D026113 ORTHO05D006797 7.3e-10 69.3 141 35.5
SEGI_29391 Sequoiadendron giganteum HOM05D022188 ORTHO05D006797 9.5e-10 68.9 209 30.1
Pp3c20_22990 Physcomitrium patens HOM05D022188 ORTHO05D006797 2.1e-09 67.8 92 44.6
Pp3c16_7650 Physcomitrium patens HOM05D026113 ORTHO05D006797 8.1e-09 65.9 150 35.3
Pp3c10_11042 Physcomitrium patens HOM05D026113 ORTHO05D006797 1.5e-07 61.6 155 35.5
Pp3c23_10180 Physcomitrium patens HOM05D022188 ORTHO05D006797 2.0e-07 61.2 92 41.3
MELO3C034566.2 Cucumis melo HOM05D006039 ORTHO05D006797 1.3e-06 58.5 65 44.6


User provided reference genes

Program Settings