Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.IH69Y8 Arachis hypogaea HOM05D006481 ORTHO05D008160 0.0e+00 1230.3 712 100.0
arahy.Tifrunner.gnm1.ann1.RQ9967 Arachis hypogaea HOM05D006481 ORTHO05D008160 0.0e+00 1199.1 713 97.2
Lj5g0022753 Lotus japonicus HOM05D006481 ORTHO05D008160 2.2e-190 669.8 724 63.7
Lalb_Chr02g0145111 Lupinus albus HOM05D006481 ORTHO05D008160 5.5e-181 638.6 791 54.5
Medtr1g106795 Medicago truncatula HOM05D006481 ORTHO05D008160 1.9e-173 613.6 727 58.5
Ca_11047_v3 Cicer arietinum L. HOM05D006481 ORTHO05D008160 1.8e-168 597.0 732 59.2
Glyma.20G132200 Glycine max HOM05D006481 ORTHO05D008160 1.2e-167 594.3 787 57.1
TPR.G27130 Trifolium pratense HOM05D006481 ORTHO05D008160 5.5e-165 585.5 732 59.0
Phvul.007G043300 Phaseolus vulgaris HOM05D006481 ORTHO05D008160 8.0e-164 581.6 784 54.3
VMungo0720G0067 Vigna mungo HOM05D006481 ORTHO05D008160 4.4e-162 575.9 801 51.7
CiPaw.05G015400 Carya illinoinensis HOM05D006481 ORTHO05D008160 1.1e-160 571.2 780 49.7
Gohir.D12G020600 Gossypium hirsutum HOM05D006481 ORTHO05D008160 1.1e-160 571.2 767 52.8
Thecc.02G113600 Theobroma cacao HOM05D006481 ORTHO05D008160 2.3e-158 563.5 778 51.3
Duzib132G1015 Durio zibethinus HOM05D006481 ORTHO05D008160 2.0e-154 550.4 767 50.8
COL.COLO4_32543 Corchorus olitorius HOM05D006481 ORTHO05D008160 3.4e-154 549.7 763 52.0
Cfa004657 Carpinus fangiana HOM05D006481 ORTHO05D008160 7.5e-154 548.5 874 44.1
Manes.10G058310 Manihot esculenta HOM05D006481 ORTHO05D008160 1.3e-153 547.7 783 50.4
Dinv15788 Davidia involucrata HOM05D006481 ORTHO05D008160 1.1e-152 544.7 820 48.3
Haze_10252 Corylus avellana HOM05D006481 ORTHO05D008160 1.9e-152 543.9 880 46.0
Gorai.008G021000 Gossypium raimondii HOM05D006481 ORTHO05D008160 2.4e-152 543.5 832 48.8
Dinv42219 Davidia involucrata HOM05D006481 ORTHO05D008160 1.9e-149 533.9 821 48.0
Gohir.A12G020400 Gossypium hirsutum HOM05D006481 ORTHO05D008160 2.1e-148 530.4 790 51.9
TWI14G1262 Tripterygium wilfordii HOM05D006481 ORTHO05D008160 1.1e-147 528.1 818 47.2
TAR376G0872 Trochodendron aralioides HOM05D006481 ORTHO05D008160 3.1e-147 526.6 771 49.0
Potri.009G090900 Populus trichocarpa HOM05D006481 ORTHO05D008160 1.3e-145 521.2 771 49.0
Prupe.8G140600 Prunus persica HOM05D006481 ORTHO05D008160 1.7e-145 520.8 769 49.5
CSS0020952 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 6.4e-145 518.8 758 52.6
QL11p031947 Quercus lobata HOM05D006481 ORTHO05D008160 1.2e-143 514.6 806 49.4
CSS0029586 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 2.1e-143 513.8 758 52.0
Potri.001G296700 Populus trichocarpa HOM05D006481 ORTHO05D008160 6.2e-140 502.3 764 46.5
MD05G1096200 Malus domestica HOM05D006481 ORTHO05D008160 1.4e-136 491.1 815 48.6
Psat6g216240 Pisum sativum HOM05D006481 ORTHO05D008160 1.5e-133 481.1 777 51.5
Sabra09G0070200 Salix brachista HOM05D006481 ORTHO05D008160 1.5e-133 481.1 740 48.9
FvH4_2g03900 Fragaria vesca HOM05D006481 ORTHO05D008160 2.8e-132 476.9 792 47.7
FAN27G2785 Fragaria x ananassa HOM05D006481 ORTHO05D008160 1.8e-131 474.2 791 47.2
RcHm_v2.0_Chr6g0252931 Rosa chinensis HOM05D006481 ORTHO05D008160 2.2e-129 467.2 799 47.2
MELO3C017986.2 Cucumis melo HOM05D006481 ORTHO05D008160 9.2e-128 461.8 729 49.1
FAN15G2146 Fragaria x ananassa HOM05D006481 ORTHO05D008160 2.1e-127 460.7 792 46.6
Actinidia34372 Actinidia chinensis HOM05D006481 ORTHO05D008160 1.3e-126 458.0 818 42.5
Nitab4.5_0004685g0050 Nicotiana tabacum HOM05D006481 ORTHO05D008160 5.1e-126 456.1 769 45.0
Cpa.g.sc106.79 Carica papaya HOM05D006481 ORTHO05D008160 1.5e-125 454.5 965 42.1
Oeu021369.1 Olea europaea HOM05D006481 ORTHO05D008160 2.8e-124 450.3 707 47.4
Nitab4.5_0001105g0200 Nicotiana tabacum HOM05D006481 ORTHO05D008160 6.2e-124 449.1 752 44.8
CsaV3_4G000490 Cucumis sativus L. HOM05D006481 ORTHO05D008160 1.8e-123 447.6 727 49.0
Sabra16G0185800 Salix brachista HOM05D006481 ORTHO05D008160 9.9e-122 441.8 724 45.4
Ciclev10027845m.g Citrus clementina HOM05D006481 ORTHO05D008160 3.2e-120 436.8 810 41.6
vmacro01976 Vaccinium macrocarpon HOM05D006481 ORTHO05D008160 2.1e-116 424.1 718 44.3
Lj5A217G88 Lonicera japonica HOM05D006481 ORTHO05D008160 5.3e-115 419.5 781 45.6
Solyc01g107260.4 Solanum lycopersicum HOM05D006481 ORTHO05D008160 6.9e-115 419.1 847 40.7
Sopen01g049510 Solanum pennellii HOM05D006481 ORTHO05D008160 9.0e-115 418.7 838 40.7
MSTRG.16692 Avicennia marina HOM05D006481 ORTHO05D008160 7.6e-114 415.6 811 41.3
AUR62031332 Chenopodium quinoa HOM05D006481 ORTHO05D008160 7.6e-114 415.6 699 44.2
AUR62027350 Chenopodium quinoa HOM05D006481 ORTHO05D008160 2.2e-113 414.1 697 44.6
Sed0008985 Sechium edule HOM05D006481 ORTHO05D008160 2.2e-113 414.1 809 43.5
GSVIVG01037865001 Vitis vinifera HOM05D006481 ORTHO05D008160 2.1e-111 407.5 737 40.3
DCAR_021965 Daucus carota HOM05D006481 ORTHO05D008160 3.9e-110 403.3 888 37.8
Atru.BG.62.p Acer truncatum HOM05D006481 ORTHO05D008160 5.6e-109 399.4 406 59.6
Ah.14g085520 Amaranthus hybridus HOM05D006481 ORTHO05D008160 1.3e-108 398.3 761 43.0
THA.LOC104825834 Tarenaya hassleriana HOM05D006481 ORTHO05D008160 1.6e-108 397.9 790 41.1
Cc02_g30880 Coffea canephora HOM05D006481 ORTHO05D008160 2.8e-108 397.1 820 40.2
CAN.G606.42 Capsicum annuum HOM05D006481 ORTHO05D008160 6.2e-108 396.0 470 53.0
PSO675G3182 Papaver somniferum HOM05D006481 ORTHO05D008160 1.4e-107 394.8 821 41.0
PSO541G1903 Papaver somniferum HOM05D006481 ORTHO05D008160 2.5e-104 384.0 821 40.9
ClCG10G010570 Citrullus lanatus HOM05D006481 ORTHO05D008160 5.5e-104 382.9 605 45.0
Aqoxy6G02732 Aquilegia oxysepala HOM05D006481 ORTHO05D008160 1.6e-103 381.3 630 42.5
Eucgr.I01079 Eucalyptus grandis HOM05D006481 ORTHO05D008160 1.6e-103 381.3 686 46.5
Carub.0001s3908 Capsella rubella HOM05D006481 ORTHO05D008160 6.0e-103 379.4 771 41.1
RhsimUnG0125900 Rhododendron simsii HOM05D006481 ORTHO05D008160 6.0e-103 379.4 796 40.8
EL10Ac8g19363 Beta vulgaris HOM05D006481 ORTHO05D008160 1.3e-102 378.3 713 42.6
AL1G57410 Arabidopsis lyrata HOM05D006481 ORTHO05D008160 3.0e-102 377.1 750 44.0
Rhsim11G0154700 Rhododendron simsii HOM05D006481 ORTHO05D008160 8.7e-102 375.6 712 42.7
Sp1g36750 Schrenkiella parvula HOM05D006481 ORTHO05D008160 1.1e-101 375.2 716 45.0
SalBow6G0734 Salvia bowleyana HOM05D006481 ORTHO05D008160 6.2e-100 369.4 727 42.5
unitig_744.g24217 Utricularia gibba HOM05D006481 ORTHO05D008160 5.3e-99 366.3 710 40.6
Thhalv10011233m.g Eutrema salsugineum HOM05D006481 ORTHO05D008160 1.5e-98 364.8 735 40.1
Aa31LG10G4220 Aethionema arabicum HOM05D006481 ORTHO05D008160 1.7e-97 361.3 714 42.6
CARHR039920 Cardamine hirsuta HOM05D006481 ORTHO05D008160 4.9e-97 359.8 677 45.5
AT1G49870 Arabidopsis thaliana HOM05D006481 ORTHO05D008160 6.5e-97 359.4 710 44.1
Peaxi162Scf00016g02732 Petunia axillaris HOM05D006481 ORTHO05D008160 1.1e-96 358.6 700 44.3
ECA234G0568 Erigeron canadensis HOM05D006481 ORTHO05D008160 1.4e-96 358.2 691 42.5
Migut.B00421 Erythranthe guttata HOM05D006481 ORTHO05D008160 2.5e-96 357.5 702 39.2
BcaB04g17289 Brassica carinata HOM05D006481 ORTHO05D008160 3.9e-94 350.1 777 40.3
HanXRQChr16g0514441 Helianthus annuus HOM05D006481 ORTHO05D008160 7.4e-93 345.9 699 43.8
A08p03520 Brassica napus HOM05D006481 ORTHO05D008160 2.8e-92 344.0 695 42.2
C08p03680 Brassica napus HOM05D006481 ORTHO05D008160 4.8e-92 343.2 698 40.7
BolC8t47171H Brassica oleracea HOM05D006481 ORTHO05D008160 4.1e-91 340.1 719 39.8
BraA08t32385Z Brassica rapa HOM05D006481 ORTHO05D008160 1.3e-89 335.1 730 41.1
Lsat_1_v5_gn_5_114361 Lactuca sativa HOM05D006481 ORTHO05D008160 1.6e-87 328.2 384 52.3
TAR628G0609 Trochodendron aralioides HOM05D006481 ORTHO05D008160 7.4e-85 319.3 403 48.6
PGSC0003DMG400025848 Solanum tuberosum HOM05D006481 ORTHO05D008160 6.9e-83 312.8 515 42.5
Zm00001eb050130 Zea mays HOM05D006481 ORTHO05D008160 9.1e-83 312.4 819 35.4
ATR0030G005 Amborella trichopoda HOM05D006481 ORTHO05D008160 1.7e-81 308.1 812 34.2
SGA_v2.0_scaffold225G43011 Striga asiatica HOM05D006481 ORTHO05D008160 2.2e-81 307.8 712 41.3
Os03g0604600 Oryza sativa ssp. japonica HOM05D006481 ORTHO05D008160 5.7e-77 293.1 407 47.9
HPP92_017760 Vanilla planifolia HOM05D006481 ORTHO05D008160 5.7e-77 293.1 576 42.0
Sc14g0002570 Simmondsia chinensis HOM05D006481 ORTHO05D008160 5.3e-59 233.4 578 42.0
SEGI_11188 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 4.7e-55 220.3 363 40.2
SEGI_37018 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 4.7e-55 220.3 363 40.2
FAN20G1292 Fragaria x ananassa HOM05D006481 ORTHO05D008160 1.2e-45 189.1 522 39.8
CDE04G1272 Ceratophyllum demersum HOM05D006481 ORTHO05D008160 1.4e-43 182.2 333 42.0
SEGI_25924 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 1.2e-39 169.1 857 26.1
Pp3c18_18840 Physcomitrium patens HOM05D006481 ORTHO05D008160 3.4e-37 161.0 381 34.9
MD10G1102400 Malus domestica HOM05D006481 ORTHO05D008160 1.9e-35 155.2 143 62.2
SMO196G0099 Selaginella moellendorffii HOM05D006481 ORTHO05D008160 4.6e-34 150.6 284 40.1
SHI05066 Sapria himalayana HOM05D006481 ORTHO05D008160 3.0e-25 121.3 132 53.0
MD10G1102500 Malus domestica HOM05D006481 ORTHO05D008160 6.6e-25 120.2 143 53.1
EL10Ac6g13964 Beta vulgaris HOM05D006481 ORTHO05D008160 6.2e-23 113.6 191 42.9
TAR628G0206 Trochodendron aralioides HOM05D006481 ORTHO05D008160 1.1e-22 112.8 307 42.3
CBR_g49330 Chara braunii HOM05D006481 ORTHO05D008160 4.4e-21 107.5 199 36.2
Duzib052G0964 Durio zibethinus HOM05D006481 ORTHO05D008160 1.5e-16 92.4 134 47.8
Hma1.2p1_1361F.1_g278150 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 7.3e-16 90.1 137 45.3
Atru.chr5.2411 Acer truncatum HOM05D006481 ORTHO05D008160 1.6e-15 89.0 91 54.9
RcHm_v2.0_Chr6g0252961 Rosa chinensis HOM05D006481 ORTHO05D008160 4.7e-15 87.4 102 48.0
Hma1.2p1_0000F.1_g001000 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 1.7e-12 79.0 364 27.2
SHI05065 Sapria himalayana HOM05D006481 ORTHO05D008160 4.2e-11 74.3 104 47.1
SGA_v2.0_scaffold4001G54416 Striga asiatica HOM05D006481 ORTHO05D008160 2.3e-09 68.6 61 60.7
BcaC05g27423 Brassica carinata HOM05D006481 ORTHO05D008160 4.0e-06 57.8 47 59.6


User provided reference genes

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