Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.7T2SE7 Arachis hypogaea HOM05D005709 ORTHO05D006306 0.0e+00 1251.9 655 100.0
arahy.Tifrunner.gnm1.ann1.IH5V0S Arachis hypogaea HOM05D005709 ORTHO05D006306 0.0e+00 1251.9 655 100.0
Medtr5g032050 Medicago truncatula HOM05D005709 ORTHO05D006306 1.9e-265 919.1 646 72.8
Ca_22702_v3 Cicer arietinum L. HOM05D005709 ORTHO05D006306 1.1e-263 913.3 650 71.7
Glyma.09G199500 Glycine max HOM05D005709 ORTHO05D006306 4.6e-259 897.9 647 73.1
Lj2g0012290 Lotus japonicus HOM05D005709 ORTHO05D006306 1.0e-258 896.7 652 74.1
VMungo1215G1966 Vigna mungo HOM05D005709 ORTHO05D006306 2.0e-254 882.5 647 70.8
Lalb_Chr09g0325971 Lupinus albus HOM05D005709 ORTHO05D006306 1.0e-253 880.2 656 70.3
Psat2g082080 Pisum sativum HOM05D005709 ORTHO05D006306 6.3e-248 860.9 650 67.8
RcHm_v2.0_Chr2g0111161 Rosa chinensis HOM05D005709 ORTHO05D006306 1.1e-241 840.1 662 66.6
QL06p035832 Quercus lobata HOM05D005709 ORTHO05D006306 1.3e-240 836.6 657 67.3
CiPaw.07G047300 Carya illinoinensis HOM05D005709 ORTHO05D006306 1.4e-239 833.2 661 67.8
MD11G1164000 Malus domestica HOM05D005709 ORTHO05D006306 2.2e-237 825.9 646 66.1
Cfa006877 Carpinus fangiana HOM05D005709 ORTHO05D006306 2.9e-237 825.5 655 66.6
FAN28G2327 Fragaria x ananassa HOM05D005709 ORTHO05D006306 6.5e-237 824.3 652 65.5
Haze_03880 Corylus avellana HOM05D005709 ORTHO05D006306 2.5e-236 822.4 656 66.8
Prupe.6G202100 Prunus persica HOM05D005709 ORTHO05D006306 4.7e-235 818.1 651 65.0
MD03G1143200 Malus domestica HOM05D005709 ORTHO05D006306 4.0e-234 815.1 646 66.3
FAN26G3468 Fragaria x ananassa HOM05D005709 ORTHO05D006306 7.5e-233 810.8 660 64.4
CANSAT01G1032 Cannabis sativa HOM05D005709 ORTHO05D006306 9.8e-233 810.4 662 65.0
FvH4_1g19610 Fragaria vesca HOM05D005709 ORTHO05D006306 2.2e-232 809.3 661 63.8
Cpa.g.sc55.19 Carica papaya HOM05D005709 ORTHO05D006306 3.8e-229 798.5 656 63.6
Actinidia28821 Actinidia chinensis HOM05D005709 ORTHO05D006306 2.3e-226 789.3 668 63.6
Ciclev10025155m.g Citrus clementina HOM05D005709 ORTHO05D006306 8.3e-224 780.8 639 63.2
vmacro18555 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 4.1e-223 778.5 664 63.6
Eucgr.H04723 Eucalyptus grandis HOM05D005709 ORTHO05D006306 5.4e-223 778.1 658 62.9
TAR625G0141 Trochodendron aralioides HOM05D005709 ORTHO05D006306 1.0e-221 773.9 660 62.3
Glyma.01G022800 Glycine max HOM05D005709 ORTHO05D006306 2.3e-221 772.7 526 75.7
PGSC0003DMG400016130 Solanum tuberosum HOM05D005709 ORTHO05D006306 1.1e-220 770.4 653 63.2
FAN19G1851 Fragaria x ananassa HOM05D005709 ORTHO05D006306 9.5e-220 767.3 623 64.4
TWI74G1439 Tripterygium wilfordii HOM05D005709 ORTHO05D006306 3.6e-219 765.4 656 61.3
Potri.006G134400 Populus trichocarpa HOM05D005709 ORTHO05D006306 1.0e-218 763.8 636 61.2
Nitab4.5_0013799g0010 Nicotiana tabacum HOM05D005709 ORTHO05D006306 2.3e-218 762.7 657 62.4
Phvul.002G146800 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 3.0e-218 762.3 534 73.2
Sopen11g005470 Solanum pennellii HOM05D005709 ORTHO05D006306 3.0e-218 762.3 658 62.9
Rhsim08G0016800 Rhododendron simsii HOM05D005709 ORTHO05D006306 1.2e-217 760.4 669 61.9
CSS0001510 Camellia sinensis var. sinensis HOM05D005709 ORTHO05D006306 2.0e-217 759.6 669 61.6
ClCG10G007760 Citrullus lanatus HOM05D005709 ORTHO05D006306 5.7e-217 758.1 649 61.8
Manes.12G125900 Manihot esculenta HOM05D005709 ORTHO05D006306 2.2e-216 756.1 652 62.4
Sabra06G0105500 Salix brachista HOM05D005709 ORTHO05D006306 4.9e-216 755.0 654 59.8
Cc07_g14050 Coffea canephora HOM05D005709 ORTHO05D006306 4.1e-215 751.9 665 60.8
Nn3g18597 Nelumbo nucifera HOM05D005709 ORTHO05D006306 7.0e-215 751.1 671 59.3
Solyc11g010660.2 Solanum lycopersicum HOM05D005709 ORTHO05D006306 9.2e-215 750.7 659 61.8
Lju188A3T31 Lonicera japonica HOM05D005709 ORTHO05D006306 7.8e-214 747.7 659 61.6
Duzib187G1076 Durio zibethinus HOM05D005709 ORTHO05D006306 1.0e-213 747.3 639 60.4
EL10Ac6g15201 Beta vulgaris HOM05D005709 ORTHO05D006306 1.3e-213 746.9 640 60.9
Thecc.01G090000 Theobroma cacao HOM05D005709 ORTHO05D006306 1.7e-213 746.5 656 59.1
ECA238G0695 Erigeron canadensis HOM05D005709 ORTHO05D006306 1.9e-212 743.0 661 58.2
Aqoxy5G01380 Aquilegia oxysepala HOM05D005709 ORTHO05D006306 1.6e-211 740.0 657 61.2
MELO3C016416.2 Cucumis melo HOM05D005709 ORTHO05D006306 2.8e-211 739.2 657 59.5
Nitab4.5_0007624g0020 Nicotiana tabacum HOM05D005709 ORTHO05D006306 1.8e-210 736.5 697 57.7
Sed0005807 Sechium edule HOM05D005709 ORTHO05D006306 4.0e-210 735.3 648 62.3
Peaxi162Scf00474g00732 Petunia axillaris HOM05D005709 ORTHO05D006306 6.8e-210 734.6 655 62.4
PGR102G2444 Punica granatum HOM05D005709 ORTHO05D006306 1.2e-209 733.8 655 61.5
HanXRQChr14g0442981 Helianthus annuus HOM05D005709 ORTHO05D006306 3.4e-209 732.3 659 60.1
CsaV3_3G006890 Cucumis sativus L. HOM05D005709 ORTHO05D006306 7.5e-209 731.1 655 61.2
Atru.chr3.1240 Acer truncatum HOM05D005709 ORTHO05D006306 2.2e-208 729.6 633 60.2
Ah.02g123530 Amaranthus hybridus HOM05D005709 ORTHO05D006306 4.6e-206 721.8 649 59.0
SGA_v2.0_scaffold115G32123 Striga asiatica HOM05D005709 ORTHO05D006306 8.6e-205 717.6 670 57.5
Gorai.003G037400 Gossypium raimondii HOM05D005709 ORTHO05D006306 2.5e-204 716.1 635 60.2
Thhalv10003796m.g Eutrema salsugineum HOM05D005709 ORTHO05D006306 9.5e-204 714.1 658 57.3
AUR62003667 Chenopodium quinoa HOM05D005709 ORTHO05D006306 6.2e-203 711.4 613 62.0
Gohir.A02G144800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 1.4e-202 710.3 646 59.3
Gohir.D03G035800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 2.0e-201 706.4 646 59.3
DCAR_010090 Daucus carota HOM05D005709 ORTHO05D006306 2.2e-200 703.0 649 57.3
Hund16527 Selenicereus undatus HOM05D005709 ORTHO05D006306 1.1e-199 700.7 659 56.4
A06p32320 Brassica napus HOM05D005709 ORTHO05D006306 4.1e-199 698.7 660 57.7
Carub.0008s2634 Capsella rubella HOM05D005709 ORTHO05D006306 1.2e-198 697.2 638 57.8
BraA06t26158Z Brassica rapa HOM05D005709 ORTHO05D006306 3.5e-198 695.7 659 58.6
Migut.K00802 Erythranthe guttata HOM05D005709 ORTHO05D006306 6.0e-198 694.9 653 58.0
AT5G65490 Arabidopsis thaliana HOM05D005709 ORTHO05D006306 1.0e-197 694.1 636 58.3
AL8G43070 Arabidopsis lyrata HOM05D005709 ORTHO05D006306 1.7e-197 693.3 654 57.5
BolC3t18312H Brassica oleracea HOM05D005709 ORTHO05D006306 8.6e-197 691.0 657 56.6
CARHR279470 Cardamine hirsuta HOM05D005709 ORTHO05D006306 2.5e-196 689.5 639 57.0
COL.COLO4_27357 Corchorus olitorius HOM05D005709 ORTHO05D006306 3.3e-196 689.1 664 56.5
Sp2g28570 Schrenkiella parvula HOM05D005709 ORTHO05D006306 4.3e-196 688.7 659 54.8
MBI16_g12470_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 9.5e-196 687.6 684 55.4
PSO170G3043 Papaver somniferum HOM05D005709 ORTHO05D006306 1.2e-193 680.6 644 56.5
C03p60550 Brassica napus HOM05D005709 ORTHO05D006306 2.9e-192 676.0 656 56.6
Aa31LG1G16510 Aethionema arabicum HOM05D005709 ORTHO05D006306 4.1e-191 672.2 654 55.7
vmacro21792 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 1.6e-190 670.2 591 60.6
vmacro18553 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 1.7e-189 666.8 565 62.7
GSVIVG01007131001 Vitis vinifera HOM05D005709 ORTHO05D006306 7.1e-183 644.8 495 65.5
SHI21884 Sapria himalayana HOM05D005709 ORTHO05D006306 3.0e-181 639.4 648 51.7
unitig_32.g11802 Utricularia gibba HOM05D005709 ORTHO05D006306 1.8e-178 630.2 684 50.9
AUR62017977 Chenopodium quinoa HOM05D005709 ORTHO05D006306 2.2e-176 623.2 653 54.8
PSO017G1508 Papaver somniferum HOM05D005709 ORTHO05D006306 2.9e-176 622.9 649 52.9
ATR0763G252 Amborella trichopoda HOM05D005709 ORTHO05D006306 1.1e-172 610.9 683 51.4
CAN.G1344.19 Capsicum annuum HOM05D005709 ORTHO05D006306 8.4e-168 594.7 544 59.2
Os08g0447200 Oryza sativa ssp. japonica HOM05D005709 ORTHO05D006306 1.4e-167 594.0 666 51.8
Sc03g0000380 Simmondsia chinensis HOM05D005709 ORTHO05D006306 3.0e-165 586.3 503 61.0
Lsat_1_v5_gn_2_70300 Lactuca sativa HOM05D005709 ORTHO05D006306 3.3e-164 582.8 508 58.9
Zm00001eb040880 Zea mays HOM05D005709 ORTHO05D006306 3.8e-160 569.3 644 48.6
vmacro21794 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 2.5e-156 556.6 604 52.3
SEGI_11890 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 1.3e-155 554.3 697 47.8
Medtr4g125890 Medicago truncatula HOM05D005709 ORTHO05D006306 1.8e-149 533.9 533 57.8
HPP92_015350 Vanilla planifolia HOM05D005709 ORTHO05D006306 1.8e-149 533.9 542 53.7
THA.LOC104809180 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 2.0e-145 520.4 482 57.5
SMO137G0394 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 1.7e-128 464.2 649 42.5
PSO675G1794 Papaver somniferum HOM05D005709 ORTHO05D006306 1.1e-122 444.9 441 56.2
TPR.G36816 Trifolium pratense HOM05D005709 ORTHO05D006306 1.1e-114 418.3 290 72.4
Mapoly0135s0033 Marchantia polymorpha HOM05D005709 ORTHO05D006306 4.5e-113 412.9 753 36.5
Pp3c1_9650 Physcomitrium patens HOM05D005709 ORTHO05D006306 2.2e-112 410.6 690 38.1
TPR.G36731 Trifolium pratense HOM05D005709 ORTHO05D006306 1.2e-105 388.3 282 72.3
TAR381G1594 Trochodendron aralioides HOM05D005709 ORTHO05D006306 3.6e-102 376.7 379 56.5
Dinv13597 Davidia involucrata HOM05D005709 ORTHO05D006306 7.5e-100 369.0 287 67.2
SMO137G0085 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 3.0e-96 357.1 568 38.6
AagrBONN_evm.TU.Sc2ySwM_368.1496 Anthoceros agrestis HOM05D005709 ORTHO05D006306 1.1e-90 338.6 647 34.9
MBI16_g19593_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 2.3e-88 330.9 334 55.7
Dinv13596 Davidia involucrata HOM05D005709 ORTHO05D006306 3.6e-86 323.6 337 56.7
Oeu002141.1 Olea europaea HOM05D005709 ORTHO05D006306 2.9e-83 313.9 288 59.7
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 3.6e-78 297.0 434 44.9
CBR_g78875 Chara braunii HOM05D005709 ORTHO05D006306 6.2e-78 296.2 491 38.1
HPP92_015330 Vanilla planifolia HOM05D005709 ORTHO05D006306 7.6e-68 262.7 333 46.8
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 6.9e-61 239.6 206 61.7
PSO210G2291 Papaver somniferum HOM05D005709 ORTHO05D006306 6.0e-57 226.5 377 42.2
TAR381G1451 Trochodendron aralioides HOM05D005709 ORTHO05D006306 1.1e-55 222.2 151 70.9
BcaC01g02778 Brassica carinata HOM05D005709 ORTHO05D006306 2.1e-54 218.0 177 61.6
Sed0017677 Sechium edule HOM05D005709 ORTHO05D006306 1.1e-50 205.7 382 40.1
Oeu031122.1 Olea europaea HOM05D005709 ORTHO05D006306 5.1e-48 196.8 190 54.7
THA.LOC104821549 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 2.1e-41 174.9 157 56.7
BcaC01g02779 Brassica carinata HOM05D005709 ORTHO05D006306 8.2e-38 162.9 119 61.3
Cre03.g145707 Chlamydomonas reinhardtii HOM05D005709 ORTHO05D006306 2.4e-37 161.4 237 38.8
PRCOL_00002122 Prasinoderma coloniale HOM05D005709 ORTHO05D006306 4.1e-37 160.6 723 26.8
BcaC01g02777 Brassica carinata HOM05D005709 ORTHO05D006306 1.4e-29 135.6 178 48.9
SEGI_13404 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 1.1e-18 99.4 98 53.1
Phvul.008G217000 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 9.4e-18 96.3 58 86.2
TPR.G34440 Trifolium pratense HOM05D005709 ORTHO05D006306 3.6e-17 94.4 63 69.8
TPR.G25795 Trifolium pratense HOM05D005709 ORTHO05D006306 4.4e-15 87.4 63 65.1
HPP92_015331 Vanilla planifolia HOM05D005709 ORTHO05D006306 3.7e-14 84.3 55 69.1
SMO207G0001 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 1.1e-13 82.8 87 46.0
BolC2t12478H Brassica oleracea HOM05D005709 ORTHO05D006306 3.5e-12 77.8 91 45.1
CARHR215690 Cardamine hirsuta HOM05D005709 ORTHO05D006306 2.2e-11 75.1 53 67.9
C02p64140 Brassica napus HOM05D005709 ORTHO05D006306 1.9e-10 72.0 91 42.9
SalBow5G5475 Salvia bowleyana HOM05D036480 ORTHO05D006306 2.7e-09 68.2 129 38.8
SMO162G0006 Selaginella moellendorffii HOM05D000981 ORTHO05D006306 6.1e-09 67.0 158 31.0


User provided reference genes

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