Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.IGD037 Arachis hypogaea HOM05D001756 ORTHO05D001581 6.4e-45 183.7 94 100.0
arahy.Tifrunner.gnm1.ann1.0BB13E Arachis hypogaea HOM05D001756 ORTHO05D001581 3.5e-43 177.9 95 97.9
arahy.Tifrunner.gnm1.ann1.YSS1PU Arachis hypogaea HOM05D001756 ORTHO05D001581 3.9e-42 174.5 95 96.8
Glyma.14G089063 Glycine max HOM05D001756 ORTHO05D001581 4.5e-14 81.3 92 60.9
Glyma.17G233500 Glycine max HOM05D001756 ORTHO05D001581 1.4e-12 76.3 92 58.7
Phvul.001G029200 Phaseolus vulgaris HOM05D001756 ORTHO05D001581 1.9e-12 75.9 92 56.5
Medtr1g017700 Medicago truncatula HOM05D001756 ORTHO05D001581 7.9e-11 70.5 90 52.2
Potri.007G006800 Populus trichocarpa HOM05D001756 ORTHO05D001581 1.1e-09 66.6 91 47.3
Manes.13G109600 Manihot esculenta HOM05D001756 ORTHO05D001581 1.5e-09 66.2 88 47.7
CiPaw.07G172800 Carya illinoinensis HOM05D001756 ORTHO05D001581 2.0e-09 65.9 91 49.5
CANSAT25G3420 Cannabis sativa HOM05D001756 ORTHO05D001581 4.3e-09 64.7 96 46.9
Atru.chr5.2299 Acer truncatum HOM05D001756 ORTHO05D001581 5.7e-09 64.3 91 48.4
Gorai.008G085100 Gossypium raimondii HOM05D001756 ORTHO05D001581 9.7e-09 63.5 88 45.5
MD15G1066300 Malus domestica HOM05D001756 ORTHO05D001581 9.7e-09 63.5 93 47.3
Medtr1g017590 Medicago truncatula HOM05D001756 ORTHO05D001581 9.7e-09 63.5 84 50.0
Dinv44936 Davidia involucrata HOM05D001756 ORTHO05D001581 1.3e-08 63.2 89 48.3
RhsimUnG0122800 Rhododendron simsii HOM05D001756 ORTHO05D001581 1.3e-08 63.2 91 50.5
Gohir.D11G210700 Gossypium hirsutum HOM05D001756 ORTHO05D001581 2.2e-08 62.4 88 45.5
Gohir.D12G076500 Gossypium hirsutum HOM05D001756 ORTHO05D001581 2.2e-08 62.4 88 44.3
Gorai.007G226000 Gossypium raimondii HOM05D001756 ORTHO05D001581 2.2e-08 62.4 88 45.5
Rhsim08G0091500 Rhododendron simsii HOM05D001756 ORTHO05D001581 2.2e-08 62.4 91 51.6
Glyma.17G233400 Glycine max HOM05D001756 ORTHO05D001581 2.8e-08 62.0 86 53.5
arahy.Tifrunner.gnm1.ann1.200WTN Arachis hypogaea HOM05D001756 ORTHO05D001581 3.7e-08 61.6 89 49.4
Gorai.003G031900 Gossypium raimondii HOM05D001756 ORTHO05D001581 3.7e-08 61.6 91 44.0
Atru.chr3.1054 Acer truncatum HOM05D001756 ORTHO05D001581 4.8e-08 61.2 80 45.0
arahy.Tifrunner.gnm1.ann1.APU27B Arachis hypogaea HOM05D001756 ORTHO05D001581 4.8e-08 61.2 89 49.4
Psat0s2637g0040 Pisum sativum HOM05D001756 ORTHO05D001581 4.8e-08 61.2 89 53.9
Duzib264G0169 Durio zibethinus HOM05D001756 ORTHO05D001581 6.3e-08 60.8 88 48.9
Glyma.06G048200 Glycine max HOM05D001756 ORTHO05D001581 6.3e-08 60.8 89 48.3
Medtr5g015140 Medicago truncatula HOM05D001756 ORTHO05D001581 6.3e-08 60.8 91 44.0
MD02G1189200 Malus domestica HOM05D001756 ORTHO05D001581 8.2e-08 60.5 86 45.3
Sabra07G0005100 Salix brachista HOM05D001756 ORTHO05D001581 8.2e-08 60.5 91 45.1
TPR.G22954 Trifolium pratense HOM05D001756 ORTHO05D001581 8.2e-08 60.5 90 47.8
Cc07_g07320 Coffea canephora HOM05D001756 ORTHO05D001581 1.1e-07 60.1 88 45.5
Gohir.D03G030200 Gossypium hirsutum HOM05D001756 ORTHO05D001581 1.1e-07 60.1 91 42.9
Lalb_Chr06g0164991 Lupinus albus HOM05D001756 ORTHO05D001581 1.1e-07 60.1 90 45.6
Potri.014G006900 Populus trichocarpa HOM05D001756 ORTHO05D001581 1.1e-07 60.1 88 44.3
Rhsim08G0091400 Rhododendron simsii HOM05D001756 ORTHO05D001581 1.4e-07 59.7 94 44.7
arahy.Tifrunner.gnm1.ann1.HNL259 Arachis hypogaea HOM05D001756 ORTHO05D001581 1.8e-07 59.3 89 49.4
arahy.Tifrunner.gnm1.ann1.XJGX9P Arachis hypogaea HOM05D001756 ORTHO05D001581 1.8e-07 59.3 41 65.9
Eucgr.H02325 Eucalyptus grandis HOM05D001756 ORTHO05D001581 1.8e-07 59.3 92 47.8
Gohir.A12G078300 Gossypium hirsutum HOM05D001756 ORTHO05D001581 1.8e-07 59.3 88 43.2
Prupe.1G420000 Prunus persica HOM05D001756 ORTHO05D001581 1.8e-07 59.3 89 48.3
Sabra14G0006400 Salix brachista HOM05D001756 ORTHO05D001581 1.8e-07 59.3 88 44.3
TPR.G13182 Trifolium pratense HOM05D001756 ORTHO05D001581 1.8e-07 59.3 81 50.6
arahy.Tifrunner.gnm1.ann1.F1MTJK Arachis hypogaea HOM05D001756 ORTHO05D001581 2.4e-07 58.9 88 44.3
arahy.Tifrunner.gnm1.ann1.Y577NZ Arachis hypogaea HOM05D001756 ORTHO05D001581 2.4e-07 58.9 89 47.2
BcaB02g09903 Brassica carinata HOM05D001756 ORTHO05D001581 2.4e-07 58.9 89 44.9
BolC3t18241H Brassica oleracea HOM05D001756 ORTHO05D001581 2.4e-07 58.9 91 50.5
Gohir.A02G150100 Gossypium hirsutum HOM05D001756 ORTHO05D001581 2.4e-07 58.9 91 42.9
Lalb_Chr08g0245221 Lupinus albus HOM05D001756 ORTHO05D001581 2.4e-07 58.9 90 48.9
Lalb_Chr22g0355741 Lupinus albus HOM05D001756 ORTHO05D001581 2.4e-07 58.9 90 43.3
TAR628G0014 Trochodendron aralioides HOM05D001756 ORTHO05D001581 2.4e-07 58.9 89 43.8
GSVIVG01037055001 Vitis vinifera HOM05D001756 ORTHO05D001581 2.4e-07 58.9 93 47.3
Ca_24672_v3 Cicer arietinum L. HOM05D001756 ORTHO05D001581 3.1e-07 58.5 91 42.9
Ca_30012_v3 Cicer arietinum L. HOM05D001756 ORTHO05D001581 3.1e-07 58.5 91 42.9
TAR376G0419 Trochodendron aralioides HOM05D001756 ORTHO05D001581 3.1e-07 58.5 82 47.6
Actinidia28000 Actinidia chinensis HOM05D001756 ORTHO05D001581 4.1e-07 58.2 79 43.0
Glyma.20G135700 Glycine max HOM05D001756 ORTHO05D001581 4.1e-07 58.2 92 43.5
Psat2g172320 Pisum sativum HOM05D001756 ORTHO05D001581 4.1e-07 58.2 89 42.7
Rhsim08G0091000 Rhododendron simsii HOM05D001756 ORTHO05D001581 4.1e-07 58.2 94 45.7
Sed0002457 Sechium edule HOM05D001756 ORTHO05D001581 4.1e-07 58.2 98 39.8
Hund13962 Selenicereus undatus HOM05D001756 ORTHO05D001581 4.1e-07 58.2 91 42.9
GSVIVG01004437001 Vitis vinifera HOM05D001756 ORTHO05D001581 4.1e-07 58.2 91 47.3
CARHR279870 Cardamine hirsuta HOM05D001756 ORTHO05D001581 5.3e-07 57.8 78 44.9
Dinv23040 Davidia involucrata HOM05D001756 ORTHO05D001581 5.3e-07 57.8 83 44.6
SalBow3G1129 Salvia bowleyana HOM05D001756 ORTHO05D001581 5.3e-07 57.8 89 44.9
TWI74G0998 Tripterygium wilfordii HOM05D001756 ORTHO05D001581 5.3e-07 57.8 91 46.2
arahy.Tifrunner.gnm1.ann1.22FXNP Arachis hypogaea HOM05D001756 ORTHO05D001581 6.9e-07 57.4 88 44.3
BcaC01g02826 Brassica carinata HOM05D001756 ORTHO05D001581 6.9e-07 57.4 91 49.5
Manes.12G117100 Manihot esculenta HOM05D001756 ORTHO05D001581 6.9e-07 57.4 89 46.1
TWI77G0501 Tripterygium wilfordii HOM05D001756 ORTHO05D001581 6.9e-07 57.4 95 50.5
arahy.Tifrunner.gnm1.ann1.GJCV3J Arachis hypogaea HOM05D001756 ORTHO05D001581 9.1e-07 57.0 94 39.4
CSS0048145 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 9.1e-07 57.0 95 46.3
Glyma.10G255800 Glycine max HOM05D001756 ORTHO05D001581 9.1e-07 57.0 92 43.5
Sp2g28960 Schrenkiella parvula HOM05D001756 ORTHO05D001581 9.1e-07 57.0 90 47.8
Glyma.01G195700 Glycine max HOM05D001756 ORTHO05D001581 1.2e-06 56.6 88 42.0
MD08G1079100 Malus domestica HOM05D001756 ORTHO05D001581 1.5e-06 56.2 94 44.7
Phvul.007G047000 Phaseolus vulgaris HOM05D001756 ORTHO05D001581 1.5e-06 56.2 92 41.3
Thecc.01G075600 Theobroma cacao HOM05D001756 ORTHO05D001581 1.5e-06 56.2 88 43.2
Haze_10304 Corylus avellana HOM05D001756 ORTHO05D001581 2.0e-06 55.8 92 42.4
Duzib147G1196 Durio zibethinus HOM05D001756 ORTHO05D001581 2.0e-06 55.8 88 44.3
Hma1.2p1_1760F.1_g301210 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 2.0e-06 55.8 87 44.8
MD15G1300000 Malus domestica HOM05D001756 ORTHO05D001581 2.0e-06 55.8 88 43.2
Phvul.003G233400 Phaseolus vulgaris HOM05D001756 ORTHO05D001581 2.0e-06 55.8 88 40.9
RhsimUnG0041200 Rhododendron simsii HOM05D001756 ORTHO05D001581 2.0e-06 55.8 89 38.2
RhsimUnG0123200 Rhododendron simsii HOM05D001756 ORTHO05D001581 2.0e-06 55.8 89 38.2
Hund06508 Selenicereus undatus HOM05D001756 ORTHO05D001581 2.0e-06 55.8 94 42.6
THA.LOC104827714 Tarenaya hassleriana HOM05D001756 ORTHO05D001581 2.0e-06 55.8 88 44.3
Thecc.02G119700 Theobroma cacao HOM05D001756 ORTHO05D001581 2.0e-06 55.8 91 41.8
Zm00001eb299250 Zea mays HOM05D012046 ORTHO05D001581 2.0e-06 55.8 52 53.8
A06p32720 Brassica napus HOM05D001756 ORTHO05D001581 2.6e-06 55.5 91 48.4
C08p24800 Brassica napus HOM05D001756 ORTHO05D001581 2.6e-06 55.5 86 46.5
BraA06t26202Z Brassica rapa HOM05D001756 ORTHO05D001581 2.6e-06 55.5 91 48.4
Gohir.A11G212500 Gossypium hirsutum HOM05D001756 ORTHO05D001581 2.6e-06 55.5 88 45.5
Hma1.2p1_2434F.1_g322120 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 2.6e-06 55.5 85 48.2
Lj5g0025862 Lotus japonicus HOM05D001756 ORTHO05D001581 2.6e-06 55.5 91 39.6
Actinidia04395 Actinidia chinensis HOM05D001756 ORTHO05D001581 3.4e-06 55.1 79 43.0
BcaC03g18360 Brassica carinata HOM05D001756 ORTHO05D001581 3.4e-06 55.1 89 42.7
A02p44100 Brassica napus HOM05D001756 ORTHO05D001581 3.4e-06 55.1 89 42.7
C02p64360 Brassica napus HOM05D001756 ORTHO05D001581 3.4e-06 55.1 89 42.7
BraA02t09333Z Brassica rapa HOM05D001756 ORTHO05D001581 3.4e-06 55.1 89 42.7
CARHR158860 Cardamine hirsuta HOM05D001756 ORTHO05D001581 3.4e-06 55.1 87 42.5
Cpa.g.c33491 Carica papaya HOM05D001756 ORTHO05D001581 3.4e-06 55.1 88 45.5
Glyma.11G046000 Glycine max HOM05D001756 ORTHO05D001581 3.4e-06 55.1 88 39.8
Lalb_Chr23g0267601 Lupinus albus HOM05D001756 ORTHO05D001581 3.4e-06 55.1 46 56.5
QL12p038416 Quercus lobata HOM05D001756 ORTHO05D001581 3.4e-06 55.1 91 45.1
ClCG01G017770 Citrullus lanatus HOM05D001756 ORTHO05D001581 4.5e-06 54.7 88 43.2
Haze_14460 Corylus avellana HOM05D001756 ORTHO05D001581 4.5e-06 54.7 92 44.6
Prupe.8G150200 Prunus persica HOM05D001756 ORTHO05D001581 4.5e-06 54.7 92 41.3
BcaB01g00674 Brassica carinata HOM05D001756 ORTHO05D001581 5.9e-06 54.3 38 68.4
BcaC07g39442 Brassica carinata HOM05D001756 ORTHO05D001581 5.9e-06 54.3 38 68.4
A09p42920 Brassica napus HOM05D001756 ORTHO05D001581 5.9e-06 54.3 86 44.2
BraA09t39759Z Brassica rapa HOM05D001756 ORTHO05D001581 5.9e-06 54.3 86 44.2
Lj5g0015089 Lotus japonicus HOM05D001756 ORTHO05D001581 5.9e-06 54.3 90 44.4
MBI16_g27034_MAGBIO Magnolia biondii HOM05D001756 ORTHO05D001581 5.9e-06 54.3 81 46.9
MD05G1105500 Malus domestica HOM05D001756 ORTHO05D001581 5.9e-06 54.3 95 40.0
RcHm_v2.0_Chr6g0309921 Rosa chinensis HOM05D001756 ORTHO05D001581 5.9e-06 54.3 94 43.6
Sopen04g031220 Solanum pennellii HOM05D001756 ORTHO05D001581 5.9e-06 54.3 93 44.1
THA.LOC104819883 Tarenaya hassleriana HOM05D001756 ORTHO05D001581 5.9e-06 54.3 84 44.0
BolC8t50097H Brassica oleracea HOM05D001756 ORTHO05D001581 7.7e-06 53.9 86 45.3
CiPaw.05G020600 Carya illinoinensis HOM05D001756 ORTHO05D001581 7.7e-06 53.9 94 40.4
Duzib093G0345 Durio zibethinus HOM05D001756 ORTHO05D001581 7.7e-06 53.9 93 41.9
Eucgr.H02324 Eucalyptus grandis HOM05D001756 ORTHO05D001581 7.7e-06 53.9 93 41.9
FAN15G0430 Fragaria x ananassa HOM05D001756 ORTHO05D001581 7.7e-06 53.9 35 74.3
FAN20G0846 Fragaria x ananassa HOM05D001756 ORTHO05D001581 7.7e-06 53.9 35 74.3
FAN20G1648 Fragaria x ananassa HOM05D001756 ORTHO05D001581 7.7e-06 53.9 91 41.8
FAN27G1437 Fragaria x ananassa HOM05D001756 ORTHO05D001581 7.7e-06 53.9 35 74.3
Lj2g0014409 Lotus japonicus HOM05D001756 ORTHO05D001581 7.7e-06 53.9 88 44.3
Lj2g0023173 Lotus japonicus HOM05D001756 ORTHO05D001581 7.7e-06 53.9 37 59.5
Psat6g214400 Pisum sativum HOM05D001756 ORTHO05D001581 7.7e-06 53.9 91 41.8
Sabra02G0091600 Salix brachista HOM05D001756 ORTHO05D001581 7.7e-06 53.9 83 44.6


User provided reference genes

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