Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.IERL18 Arachis hypogaea HOM05D007507 ORTHO05D009420 9.3e-78 293.5 152 100.0
arahy.Tifrunner.gnm1.ann1.UCBT0G Arachis hypogaea HOM05D007507 ORTHO05D009420 5.1e-76 287.7 152 98.0
Glyma.13G175400 Glycine max HOM05D007507 ORTHO05D009420 3.9e-44 181.8 146 69.9
Glyma.07G201000 Glycine max HOM05D007507 ORTHO05D009420 6.3e-42 174.5 146 67.8
VMungo0251G0526 Vigna mungo HOM05D007507 ORTHO05D009420 2.2e-39 166.0 144 66.0
TPR.G19926 Trifolium pratense HOM05D007507 ORTHO05D009420 5.0e-39 164.9 146 65.8
Medtr4g088390 Medicago truncatula HOM05D007507 ORTHO05D009420 1.9e-38 162.9 151 60.3
Lj4g0010126 Lotus japonicus HOM05D007507 ORTHO05D009420 9.4e-38 160.6 146 63.0
Lalb_Chr20g0121601 Lupinus albus HOM05D007507 ORTHO05D009420 2.6e-35 152.5 146 61.0
Phvul.002G232000 Phaseolus vulgaris HOM05D007507 ORTHO05D009420 5.7e-35 151.4 138 62.3
Medtr2g014380 Medicago truncatula HOM05D007507 ORTHO05D009420 4.8e-34 148.3 150 58.7
Glyma.15G077500 Glycine max HOM05D007507 ORTHO05D009420 8.2e-34 147.5 146 63.0
TPR.G39426 Trifolium pratense HOM05D007507 ORTHO05D009420 8.2e-34 147.5 151 58.9
Psat7g115600 Pisum sativum HOM05D007507 ORTHO05D009420 1.6e-32 143.3 149 60.4
Glyma.13G236200 Glycine max HOM05D007507 ORTHO05D009420 4.5e-32 141.7 147 61.9
arahy.Tifrunner.gnm1.ann1.XNU6AG Arachis hypogaea HOM05D007507 ORTHO05D009420 1.3e-31 140.2 149 59.1
Phvul.006G182800 Phaseolus vulgaris HOM05D007507 ORTHO05D009420 5.0e-31 138.3 141 61.7
arahy.Tifrunner.gnm1.ann1.26E61A Arachis hypogaea HOM05D007507 ORTHO05D009420 1.2e-29 133.7 145 57.9
QL05p042078 Quercus lobata HOM05D007507 ORTHO05D009420 1.6e-29 133.3 138 55.8
CiPaw.10G052300 Carya illinoinensis HOM05D007507 ORTHO05D009420 2.6e-27 125.9 145 56.6
GSVIVG01021107001 Vitis vinifera HOM05D007507 ORTHO05D009420 5.7e-27 124.8 147 52.4
MD10G1289800 Malus domestica HOM05D007507 ORTHO05D009420 9.8e-27 124.0 141 55.3
Prupe.4G051900 Prunus persica HOM05D007507 ORTHO05D009420 1.3e-26 123.6 136 54.4
MD05G1310700 Malus domestica HOM05D007507 ORTHO05D009420 2.2e-26 122.9 142 52.8
Actinidia16570 Actinidia chinensis HOM05D007507 ORTHO05D009420 3.7e-26 122.1 145 53.1
Thecc.06G181600 Theobroma cacao HOM05D007507 ORTHO05D009420 8.3e-26 120.9 146 51.4
FAN11G0818 Fragaria x ananassa HOM05D007507 ORTHO05D009420 1.1e-25 120.6 144 48.6
CSS0001598 Camellia sinensis var. sinensis HOM05D007507 ORTHO05D009420 2.4e-25 119.4 144 51.4
RcHm_v2.0_Chr5g0009091 Rosa chinensis HOM05D007507 ORTHO05D009420 3.1e-25 119.0 144 49.3
TAR626G1744 Trochodendron aralioides HOM05D007507 ORTHO05D009420 4.1e-25 118.6 141 53.2
Gorai.009G167100 Gossypium raimondii HOM05D007507 ORTHO05D009420 7.0e-25 117.9 152 49.3
Duzib235G0685 Durio zibethinus HOM05D007507 ORTHO05D009420 9.1e-25 117.5 143 49.7
Nn1g04226 Nelumbo nucifera HOM05D007507 ORTHO05D009420 2.7e-24 115.9 132 53.8
FAN21G1585 Fragaria x ananassa HOM05D007507 ORTHO05D009420 5.9e-24 114.8 144 48.6
Gohir.D05G162100 Gossypium hirsutum HOM05D007507 ORTHO05D009420 5.9e-24 114.8 145 48.3
Atru.chr10.1803 Acer truncatum HOM05D007507 ORTHO05D009420 1.7e-23 113.2 141 51.1
Dinv40597 Davidia involucrata HOM05D007507 ORTHO05D009420 1.7e-23 113.2 153 50.3
FvH4_3g08680 Fragaria vesca HOM05D007507 ORTHO05D009420 2.2e-23 112.8 144 47.2
Duzib192G0611 Durio zibethinus HOM05D007507 ORTHO05D009420 3.8e-23 112.1 148 48.6
Potri.011G057400 Populus trichocarpa HOM05D007507 ORTHO05D009420 3.8e-23 112.1 146 52.1
CANSAT35G2017 Cannabis sativa HOM05D007507 ORTHO05D009420 5.0e-23 111.7 136 50.0
Cpa.g.sc27.9 Carica papaya HOM05D007507 ORTHO05D009420 6.5e-23 111.3 145 49.0
Gohir.A05G159400 Gossypium hirsutum HOM05D007507 ORTHO05D009420 6.5e-23 111.3 146 48.6
Ciclev10016932m.g Citrus clementina HOM05D007507 ORTHO05D009420 8.5e-23 110.9 148 50.0
VMungo0540G0304 Vigna mungo HOM05D007507 ORTHO05D009420 1.1e-22 110.5 146 52.1
Actinidia05654 Actinidia chinensis HOM05D007507 ORTHO05D009420 1.9e-22 109.8 143 48.3
Dinv17350 Davidia involucrata HOM05D007507 ORTHO05D009420 1.9e-22 109.8 147 49.0
Sabra04G0030100 Salix brachista HOM05D007507 ORTHO05D009420 2.5e-22 109.4 139 51.1
Potri.004G048201 Populus trichocarpa HOM05D007507 ORTHO05D009420 5.5e-22 108.2 146 51.4
Gohir.A09G073500 Gossypium hirsutum HOM05D007507 ORTHO05D009420 1.2e-21 107.1 150 45.3
Gohir.D09G073200 Gossypium hirsutum HOM05D007507 ORTHO05D009420 1.6e-21 106.7 150 45.3
Gorai.006G088200 Gossypium raimondii HOM05D007507 ORTHO05D009420 1.6e-21 106.7 150 45.3
Manes.17G048900 Manihot esculenta HOM05D007507 ORTHO05D009420 1.6e-21 106.7 140 48.6
Cc02_g13780 Coffea canephora HOM05D007507 ORTHO05D009420 2.1e-21 106.3 147 49.0
Eucgr.E03247 Eucalyptus grandis HOM05D007507 ORTHO05D009420 2.8e-21 105.9 139 46.0
Sabra11G0039300 Salix brachista HOM05D007507 ORTHO05D009420 1.0e-20 104.0 146 49.3
Manes.16G031300 Manihot esculenta HOM05D007507 ORTHO05D009420 1.4e-20 103.6 143 46.2
arahy.Tifrunner.gnm1.ann1.PE4GJ8 Arachis hypogaea HOM05D000372 ORTHO05D009420 2.3e-20 102.8 161 47.2
TWI38G1903 Tripterygium wilfordii HOM05D007507 ORTHO05D009420 2.3e-20 102.8 144 47.2
PGSC0003DMG400031763 Solanum tuberosum HOM05D007507 ORTHO05D009420 9.8e-19 97.4 133 48.9
ClCG01G023220 Citrullus lanatus HOM05D007507 ORTHO05D009420 1.3e-18 97.1 152 39.5
Atru.chr10.1804 Acer truncatum HOM05D007507 ORTHO05D009420 2.2e-18 96.3 137 48.9
HanXRQChr04g0113131 Helianthus annuus HOM05D007507 ORTHO05D009420 2.8e-18 95.9 136 44.9
MSTRG.14710 Avicennia marina HOM05D007507 ORTHO05D009420 8.3e-18 94.4 83 63.9
Gorai.010G158100 Gossypium raimondii HOM05D007507 ORTHO05D009420 1.1e-17 94.0 150 44.0
Lsat_1_v5_gn_7_22681 Lactuca sativa HOM05D007507 ORTHO05D009420 1.4e-17 93.6 145 43.4
PGR042G2392 Punica granatum HOM05D007507 ORTHO05D009420 1.4e-17 93.6 143 44.8
Gohir.D06G135900 Gossypium hirsutum HOM05D007507 ORTHO05D009420 2.4e-17 92.8 150 44.0
Psat1g203160 Pisum sativum HOM05D007507 ORTHO05D009420 9.2e-17 90.9 112 53.6
CsaV3_6G050370 Cucumis sativus L. HOM05D007507 ORTHO05D009420 1.6e-16 90.1 155 40.6
Hma1.2p1_0558F.1_g178550 Hydrangea macrophylla HOM05D007507 ORTHO05D009420 1.6e-16 90.1 128 48.4
Sopen02g022610 Solanum pennellii HOM05D007507 ORTHO05D009420 4.5e-16 88.6 150 43.3
Solyc02g077720.4 Solanum lycopersicum HOM05D007507 ORTHO05D009420 1.0e-15 87.4 150 43.3
Aqoxy4G00641 Aquilegia oxysepala HOM05D007507 ORTHO05D009420 1.3e-15 87.0 124 46.0
DCAR_004049 Daucus carota HOM05D007507 ORTHO05D009420 8.6e-15 84.3 136 44.9
Migut.H01473 Erythranthe guttata HOM05D007507 ORTHO05D009420 1.5e-14 83.6 135 43.7
MBI07_g29118_MAGBIO Magnolia biondii HOM05D007507 ORTHO05D009420 5.6e-14 81.6 142 43.0
Nitab4.5_0002813g0060 Nicotiana tabacum HOM05D007507 ORTHO05D009420 5.6e-14 81.6 135 44.4
Oeu015676.1 Olea europaea HOM05D007507 ORTHO05D009420 5.6e-14 81.6 129 41.9
Nitab4.5_0007893g0030 Nicotiana tabacum HOM05D007507 ORTHO05D009420 2.1e-13 79.7 135 45.2
DCAR_008007 Daucus carota HOM05D007507 ORTHO05D009420 2.8e-13 79.3 148 39.9
PSO675G6999 Papaver somniferum HOM05D007507 ORTHO05D009420 2.8e-13 79.3 131 42.0
ECA236G3296 Erigeron canadensis HOM05D007507 ORTHO05D009420 6.1e-13 78.2 78 61.5
Sed0011593 Sechium edule HOM05D007507 ORTHO05D009420 4.0e-12 75.5 131 42.0
MELO3C007264.2 Cucumis melo HOM05D007507 ORTHO05D009420 1.5e-11 73.6 114 45.6
SalBow8G4682 Salvia bowleyana HOM05D007507 ORTHO05D009420 1.5e-11 73.6 140 43.6
SEGI_17757 Sequoiadendron giganteum HOM05D007507 ORTHO05D009420 2.0e-11 73.2 82 52.4
Oeu027697.1 Olea europaea HOM05D007507 ORTHO05D009420 5.7e-11 71.6 107 44.9
Haze_06387 Corylus avellana HOM05D007507 ORTHO05D009420 1.7e-10 70.1 147 38.8
PSO541G3558 Papaver somniferum HOM05D007507 ORTHO05D009420 1.7e-10 70.1 95 47.4
Migut.M01111 Erythranthe guttata HOM05D007507 ORTHO05D009420 6.4e-10 68.2 138 39.9
Oeu064800.1 Olea europaea HOM05D007507 ORTHO05D009420 8.3e-10 67.8 110 41.8
SalBow8G0489 Salvia bowleyana HOM05D007507 ORTHO05D009420 7.0e-09 64.7 71 60.6
SEGI_36970 Sequoiadendron giganteum HOM05D007507 ORTHO05D009420 1.0e-07 60.8 98 41.8
ATR0680G191 Amborella trichopoda HOM05D003527 ORTHO05D004099 5.0e-07 58.5 142 33.8
SEGI_35508 Sequoiadendron giganteum HOM05D007507 ORTHO05D009420 5.0e-07 58.5 68 52.9
Duzib128G0537 Durio zibethinus HOM05D003527 ORTHO05D004099 6.6e-07 58.2 68 52.9
Rhsim13G0180100 Rhododendron simsii HOM05D007507 ORTHO05D009420 8.6e-07 57.8 104 39.4
SalBow8G0028 Salvia bowleyana HOM05D002091 ORTHO05D002140 1.1e-06 57.4 129 40.3
Manes.08G081800 Manihot esculenta HOM05D003527 ORTHO05D004099 1.5e-06 57.0 116 37.1
Aqoxy4G02910 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 2.5e-06 56.2 117 37.6
COL.COLO4_14818 Corchorus olitorius HOM05D003527 ORTHO05D004099 2.5e-06 56.2 68 52.9
arahy.Tifrunner.gnm1.ann1.QWF1SC Arachis hypogaea HOM05D003527 ORTHO05D004099 5.6e-06 55.1 72 41.7
PSO339G4025 Papaver somniferum HOM05D003527 ORTHO05D004099 5.6e-06 55.1 120 36.7
PSO384G3887 Papaver somniferum HOM05D003527 ORTHO05D004099 5.6e-06 55.1 120 36.7
Sopen09g005410 Solanum pennellii HOM05D003527 ORTHO05D004099 5.6e-06 55.1 140 32.1
TAR636G1653 Trochodendron aralioides HOM05D003527 ORTHO05D004099 5.6e-06 55.1 73 45.2
arahy.Tifrunner.gnm1.ann1.95G3UD Arachis hypogaea HOM05D003527 ORTHO05D004099 7.3e-06 54.7 72 41.7
Cc06_g02720 Coffea canephora HOM05D003527 ORTHO05D004099 7.3e-06 54.7 97 42.3
CSS0030599 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 9.5e-06 54.3 77 41.6
Gohir.A05G096000 Gossypium hirsutum HOM05D003527 ORTHO05D004099 9.5e-06 54.3 117 35.0
Gohir.D05G096200 Gossypium hirsutum HOM05D003527 ORTHO05D004099 9.5e-06 54.3 68 50.0
Gorai.009G099700 Gossypium raimondii HOM05D003527 ORTHO05D004099 9.5e-06 54.3 68 50.0
MBI14_g37823_MAGBIO Magnolia biondii HOM05D003527 ORTHO05D004099 9.5e-06 54.3 72 47.2
TAR633G1470 Trochodendron aralioides HOM05D003527 ORTHO05D004099 9.5e-06 54.3 119 37.0


User provided reference genes

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