Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.IDH5I9 Arachis hypogaea HOM05D005619 ORTHO05D006696 7.3e-101 370.5 186 100.0
arahy.Tifrunner.gnm1.ann1.2YL4XG Arachis hypogaea HOM05D005619 ORTHO05D006696 2.1e-100 369.0 186 98.9
Lj1g0018800 Lotus japonicus HOM05D005619 ORTHO05D006696 2.4e-91 339.0 186 89.8
Lj6g0025019 Lotus japonicus HOM05D005619 ORTHO05D006696 2.4e-91 339.0 186 89.8
Lalb_Chr03g0027081 Lupinus albus HOM05D005619 ORTHO05D006696 4.5e-90 334.7 186 89.2
Medtr3g070470 Medicago truncatula HOM05D005619 ORTHO05D006696 9.3e-88 327.0 187 87.7
Glyma.18G027600 Glycine max HOM05D005619 ORTHO05D006696 6.0e-87 324.3 186 87.6
Phvul.001G242800 Phaseolus vulgaris HOM05D005619 ORTHO05D006696 6.0e-87 324.3 186 85.5
Psat5g128520 Pisum sativum HOM05D005619 ORTHO05D006696 1.8e-86 322.8 186 85.5
TPR.G16245 Trifolium pratense HOM05D005619 ORTHO05D006696 2.3e-86 322.4 192 84.9
VMungo1383G0062 Vigna mungo HOM05D005619 ORTHO05D006696 5.1e-86 321.2 184 85.3
Glyma.11G229600 Glycine max HOM05D005619 ORTHO05D006696 2.5e-85 318.9 186 86.0
Lalb_Chr01g0004131 Lupinus albus HOM05D005619 ORTHO05D006696 6.2e-84 314.3 207 79.2
QL08p063145 Quercus lobata HOM05D005619 ORTHO05D006696 9.3e-80 300.4 185 81.6
Haze_17223 Corylus avellana HOM05D005619 ORTHO05D006696 1.5e-74 283.1 186 77.4
Cfa001322 Carpinus fangiana HOM05D005619 ORTHO05D006696 2.0e-74 282.7 186 76.3
Sed0003089 Sechium edule HOM05D005619 ORTHO05D006696 3.4e-74 282.0 186 72.6
CsaV3_6G001830 Cucumis sativus L. HOM05D005619 ORTHO05D006696 3.8e-73 278.5 186 72.6
CANSAT56G2799 Cannabis sativa HOM05D005619 ORTHO05D006696 6.5e-73 277.7 186 73.1
CiPaw.02G192300 Carya illinoinensis HOM05D000781 ORTHO05D000643 1.4e-72 276.6 177 77.4
CiPaw.08G091200 Carya illinoinensis HOM05D005619 ORTHO05D006696 2.5e-72 275.8 186 73.7
Cpa.g.sc19.176 Carica papaya HOM05D005619 ORTHO05D006696 1.6e-71 273.1 186 70.4
Thecc.10G016900 Theobroma cacao HOM05D005619 ORTHO05D006696 6.0e-71 271.2 186 71.5
PGR142G0483 Punica granatum HOM05D005619 ORTHO05D006696 7.9e-71 270.8 186 71.5
GSVIVG01032822001 Vitis vinifera HOM05D005619 ORTHO05D006696 7.9e-71 270.8 187 71.7
ClCG11G006160 Citrullus lanatus HOM05D005619 ORTHO05D006696 1.0e-70 270.4 186 71.5
AL5G36640 Arabidopsis lyrata HOM05D005619 ORTHO05D006696 3.9e-70 268.5 186 68.8
Eucgr.G03057 Eucalyptus grandis HOM05D005619 ORTHO05D006696 3.9e-70 268.5 186 70.4
AT1G19080 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 8.7e-70 267.3 186 68.8
AT3G55490 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 8.7e-70 267.3 186 68.8
Duzib114G0170 Durio zibethinus HOM05D005619 ORTHO05D006696 8.7e-70 267.3 182 70.9
TAR369G0168 Trochodendron aralioides HOM05D005619 ORTHO05D006696 8.7e-70 267.3 187 70.6
Thhalv10017287m.g Eutrema salsugineum HOM05D005619 ORTHO05D006696 1.1e-69 266.9 184 70.1
Atru.chr12.29 Acer truncatum HOM05D005619 ORTHO05D006696 1.5e-69 266.5 185 68.6
CARHR135030 Cardamine hirsuta HOM05D005619 ORTHO05D006696 1.5e-69 266.5 186 69.9
FAN01G2425 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.9e-69 266.2 186 68.8
FAN10G0566 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.9e-69 266.2 186 68.8
RcHm_v2.0_Chr1g0370121 Rosa chinensis HOM05D005619 ORTHO05D006696 3.3e-69 265.4 186 68.3
CARHR165540 Cardamine hirsuta HOM05D005619 ORTHO05D006696 4.3e-69 265.0 186 67.7
FvH4_7g24440 Fragaria vesca HOM05D005619 ORTHO05D006696 4.3e-69 265.0 186 68.3
THA.LOC104824313 Tarenaya hassleriana HOM05D005619 ORTHO05D006696 5.7e-69 264.6 182 69.2
BcaNung05464 Brassica carinata HOM05D005619 ORTHO05D006696 9.7e-69 263.8 184 69.6
Aqoxy4G02564 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 2.8e-68 262.3 187 68.4
Duzib128G1619 Durio zibethinus HOM05D005619 ORTHO05D006696 3.7e-68 261.9 186 68.3
Sabra08G0050000 Salix brachista HOM05D005619 ORTHO05D006696 3.7e-68 261.9 186 70.4
BraA04t18498Z Brassica rapa HOM05D005619 ORTHO05D006696 4.8e-68 261.5 184 68.5
Gohir.A06G163800 Gossypium hirsutum HOM05D005619 ORTHO05D006696 4.8e-68 261.5 186 68.3
Gohir.D06G169500 Gossypium hirsutum HOM05D005619 ORTHO05D006696 4.8e-68 261.5 186 68.3
Gorai.010G198200 Gossypium raimondii HOM05D005619 ORTHO05D006696 4.8e-68 261.5 186 68.3
Potri.008G068100 Populus trichocarpa HOM05D005619 ORTHO05D006696 8.2e-68 260.8 186 68.8
Manes.04G157300 Manihot esculenta HOM05D005619 ORTHO05D006696 1.1e-67 260.4 186 68.3
Nn2g11500 Nelumbo nucifera HOM05D005619 ORTHO05D006696 1.1e-67 260.4 186 68.3
BolC4t28280H Brassica oleracea HOM05D005619 ORTHO05D006696 1.4e-67 260.0 182 68.7
Hund13861 Selenicereus undatus HOM05D005619 ORTHO05D006696 1.8e-67 259.6 187 66.3
A04p30090 Brassica napus HOM05D005619 ORTHO05D006696 2.4e-67 259.2 185 68.6
MD01G1152600 Malus domestica HOM05D005619 ORTHO05D006696 3.1e-67 258.8 186 65.1
Sp4g22380 Schrenkiella parvula HOM05D005619 ORTHO05D006696 3.1e-67 258.8 184 66.8
Sc11g0001040 Simmondsia chinensis HOM05D005619 ORTHO05D006696 4.1e-67 258.5 187 67.4
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 5.3e-67 258.1 186 68.8
Potri.010G189200 Populus trichocarpa HOM05D005619 ORTHO05D006696 9.0e-67 257.3 186 69.4
BcaC02g07350 Brassica carinata HOM05D005619 ORTHO05D006696 2.6e-66 255.8 183 67.2
C04p67770 Brassica napus HOM05D005619 ORTHO05D006696 4.5e-66 255.0 182 67.6
Carub.0005s2221 Capsella rubella HOM05D005619 ORTHO05D006696 1.3e-65 253.4 186 64.5
Prupe.2G202300 Prunus persica HOM05D005619 ORTHO05D006696 2.9e-65 252.3 186 64.5
AUR62022323 Chenopodium quinoa HOM05D005619 ORTHO05D006696 5.0e-65 251.5 184 66.3
AUR62034382 Chenopodium quinoa HOM05D005619 ORTHO05D006696 5.0e-65 251.5 184 65.8
Lj3A878T24 Lonicera japonica HOM05D005619 ORTHO05D006696 5.0e-65 251.5 187 65.8
MBI05_g05306_MAGBIO Magnolia biondii HOM05D005619 ORTHO05D006696 6.5e-65 251.1 183 66.1
Prupe.2G249700 Prunus persica HOM05D005619 ORTHO05D006696 6.5e-65 251.1 186 64.0
PSO339G2325 Papaver somniferum HOM05D005619 ORTHO05D006696 8.5e-65 250.8 184 65.8
Actinidia31994 Actinidia chinensis HOM05D005619 ORTHO05D006696 1.1e-64 250.4 187 64.2
Ciclev10033435m.g Citrus clementina HOM05D005619 ORTHO05D006696 1.1e-64 250.4 171 69.6
EL10Ac2g04534 Beta vulgaris HOM05D005619 ORTHO05D006696 2.5e-64 249.2 187 66.3
Dinv16155 Davidia involucrata HOM05D005619 ORTHO05D006696 3.2e-64 248.8 187 64.2
Aqoxy5G02842 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 1.2e-63 246.9 187 65.2
CSS0006168 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 1.0e-62 243.8 187 64.7
CDE04G2394 Ceratophyllum demersum HOM05D005619 ORTHO05D006696 1.8e-62 243.0 182 65.9
DCAR_026757 Daucus carota HOM05D005619 ORTHO05D006696 1.8e-62 243.0 187 64.2
TWI53G0619 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 6.7e-62 241.1 171 68.4
Hma1.2p1_2256F.1_g318210 Hydrangea macrophylla HOM05D005619 ORTHO05D006696 1.5e-61 240.0 183 63.9
HanXRQChr08g0213181 Helianthus annuus HOM05D005619 ORTHO05D006696 5.7e-61 238.0 182 63.7
Oeu057772.1 Olea europaea HOM05D005619 ORTHO05D006696 9.7e-61 237.3 187 63.1
BcaC02g07392 Brassica carinata HOM05D005619 ORTHO05D006696 2.8e-60 235.7 166 68.7
HanXRQChr15g0468911 Helianthus annuus HOM05D005619 ORTHO05D006696 2.8e-60 235.7 182 63.2
MSTRG.870 Avicennia marina HOM05D005619 ORTHO05D006696 2.4e-59 232.6 185 62.2
SalBow8G4625 Salvia bowleyana HOM05D005619 ORTHO05D006696 3.1e-59 232.3 187 60.4
COL.COLO4_25718 Corchorus olitorius HOM05D005619 ORTHO05D006696 6.9e-59 231.1 186 64.0
ECA233G2873 Erigeron canadensis HOM05D005619 ORTHO05D006696 6.9e-59 231.1 182 61.5
Migut.E00386 Erythranthe guttata HOM05D005619 ORTHO05D006696 3.4e-58 228.8 187 59.4
HanXRQChr09g0271791 Helianthus annuus HOM05D005619 ORTHO05D006696 5.9e-58 228.0 182 59.9
Os08g0274700 Oryza sativa ssp. japonica HOM05D005619 ORTHO05D006696 1.3e-57 226.9 185 60.5
Lsat_1_v5_gn_8_41961 Lactuca sativa HOM05D005619 ORTHO05D006696 2.2e-57 226.1 182 61.0
unitig_52.g17125 Utricularia gibba HOM05D005619 ORTHO05D006696 1.4e-56 223.4 185 61.1
Zm00001eb412290 Zea mays HOM05D005619 ORTHO05D006696 2.5e-56 222.6 185 59.5
ECA247G2146 Erigeron canadensis HOM05D005619 ORTHO05D006696 3.2e-56 222.2 182 58.8
SGA_v2.0_scaffold170G38815 Striga asiatica HOM05D005619 ORTHO05D006696 4.2e-56 221.9 187 57.8
HPP92_000355 Vanilla planifolia HOM05D000755 ORTHO05D000642 5.5e-56 221.5 183 60.7
HPP92_000422 Vanilla planifolia HOM05D000755 ORTHO05D006696 7.2e-56 221.1 183 60.1
Zm00001eb198650 Zea mays HOM05D005619 ORTHO05D006696 9.4e-56 220.7 185 59.5
TAR633G2706 Trochodendron aralioides HOM05D005619 ORTHO05D006696 1.6e-55 219.9 148 73.6
ATR0481G004 Amborella trichopoda HOM05D005619 ORTHO05D006696 3.6e-55 218.8 183 57.9
Peaxi162Scf00451g00930 Petunia axillaris HOM05D005619 ORTHO05D006696 3.6e-55 218.8 189 58.2
CAN.G1489.22 Capsicum annuum HOM05D005619 ORTHO05D006696 1.4e-54 216.9 189 58.7
Solyc05g008620.4 Solanum lycopersicum HOM05D005619 ORTHO05D006696 1.8e-54 216.5 189 57.7
Sopen05g004460 Solanum pennellii HOM05D005619 ORTHO05D006696 1.8e-54 216.5 189 57.7
PGSC0003DMG400030566 Solanum tuberosum HOM05D005619 ORTHO05D006696 2.3e-54 216.1 189 57.7
Cc03_g10740 Coffea canephora HOM05D005619 ORTHO05D006696 5.7e-53 211.5 189 56.6
FAN06G3728 Fragaria x ananassa HOM05D005619 ORTHO05D006696 9.7e-53 210.7 149 66.4
MELO3C029903.2 Cucumis melo HOM05D005619 ORTHO05D006696 2.0e-50 203.0 200 56.5
TWI73G0774 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 2.9e-49 199.1 183 56.3
DCAR_023625 Daucus carota HOM05D005619 ORTHO05D006696 3.2e-48 195.7 149 62.4
SMO356G0622 Selaginella moellendorffii HOM05D005619 ORTHO05D006696 4.7e-47 191.8 185 49.7
Mapoly0053s0030 Marchantia polymorpha HOM05D005619 ORTHO05D006696 1.0e-46 190.7 183 50.8
SalBow8G2997 Salvia bowleyana HOM05D005619 ORTHO05D006696 3.0e-46 189.1 205 50.2
Mapoly0034s0059 Marchantia polymorpha HOM05D005619 ORTHO05D006696 3.9e-46 188.7 183 50.3
CSS0006460 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 5.2e-46 188.3 168 58.3
Nitab4.5_0000350g0020 Nicotiana tabacum HOM05D005619 ORTHO05D006696 2.0e-45 186.4 189 54.0
Sabra10G0145900 Salix brachista HOM05D005619 ORTHO05D006696 2.0e-45 186.4 186 55.4
Pp3c25_12660 Physcomitrium patens HOM05D005619 ORTHO05D006696 1.1e-43 180.6 182 48.4
Cc03_g13530 Coffea canephora HOM05D005619 ORTHO05D006696 1.4e-43 180.3 166 54.8
Peaxi162Scf00205g01136 Petunia axillaris HOM05D005619 ORTHO05D006696 1.4e-43 180.3 150 59.3
C04p07340 Brassica napus HOM05D004515 ORTHO05D006013 7.7e-42 174.5 147 61.2
FAN06G2505 Fragaria x ananassa HOM05D005619 ORTHO05D006696 3.8e-41 172.2 149 58.4
CARHR159370 Cardamine hirsuta HOM05D005619 ORTHO05D006696 9.4e-40 167.5 112 67.0
AagrBONN_evm.TU.Sc2ySwM_228.5247 Anthoceros agrestis HOM05D005619 ORTHO05D006696 1.8e-38 163.3 186 43.5
Nitab4.5_0003886g0110 Nicotiana tabacum HOM05D005619 ORTHO05D006696 1.8e-38 163.3 187 48.7
Aa31LG5G19540 Aethionema arabicum HOM05D005619 ORTHO05D006696 2.6e-37 159.5 103 70.9
AagrBONN_evm.TU.Sc2ySwM_344.729 Anthoceros agrestis HOM05D005619 ORTHO05D006696 2.6e-37 159.5 183 44.3
CBR_g38120 Chara braunii HOM05D005619 ORTHO05D006696 4.4e-37 158.7 187 40.6
BolC4t22357H Brassica oleracea HOM05D004515 ORTHO05D006013 6.3e-28 128.3 158 45.6
ATR0568G146 Amborella trichopoda HOM05D005619 ORTHO05D006696 4.2e-24 115.5 117 50.4
AagrBONN_evm.TU.Sc2ySwM_344.737 Anthoceros agrestis HOM05D005619 ORTHO05D006696 3.6e-23 112.5 104 52.9
BcaB08g35316 Brassica carinata HOM05D005619 ORTHO05D006696 6.8e-22 108.2 71 67.6
C04p07380 Brassica napus HOM05D005619 ORTHO05D006696 2.0e-21 106.7 135 45.2
Actinidia33632 Actinidia chinensis HOM05D005619 ORTHO05D006696 2.6e-21 106.3 98 56.1
Cre06.g251750 Chlamydomonas reinhardtii HOM05D005619 ORTHO05D006696 3.1e-19 99.4 188 30.9
MCO08G248 Micromonas commoda HOM05D005619 ORTHO05D006696 3.5e-18 95.9 167 31.1
HanXRQChr01g0017101 Helianthus annuus HOM05D005619 ORTHO05D006696 5.0e-17 92.0 62 72.6
HanXRQChr12g0375531 Helianthus annuus HOM05D005619 ORTHO05D006696 8.0e-15 84.7 72 51.4
Thecc.10G017600 Theobroma cacao HOM05D009631 ORTHO05D011824 8.0e-15 84.7 83 57.8
Cfa027228 Carpinus fangiana HOM05D005619 ORTHO05D006696 3.2e-11 72.8 174 27.6
PRCOL_00002083 Prasinoderma coloniale HOM05D005619 ORTHO05D006696 7.0e-11 71.6 161 30.4
QL03p009034 Quercus lobata HOM05D000946 ORTHO05D006696 3.5e-10 69.3 37 86.5


User provided reference genes

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