Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ID3JIZ Arachis hypogaea HOM05D006346 ORTHO05D007910 0.0e+00 1384.4 696 100.0
arahy.Tifrunner.gnm1.ann1.VMKR8Z Arachis hypogaea HOM05D006346 ORTHO05D007910 0.0e+00 1224.2 618 98.9
Glyma.07G102300 Glycine max HOM05D006346 ORTHO05D007910 0.0e+00 1117.4 704 80.4
Lalb_Chr08g0234231 Lupinus albus HOM05D006346 ORTHO05D007910 0.0e+00 1115.1 712 79.8
Lj6g0013256 Lotus japonicus HOM05D006346 ORTHO05D007910 0.0e+00 1109.7 713 79.4
Phvul.003G072700 Phaseolus vulgaris HOM05D006346 ORTHO05D007910 0.0e+00 1082.8 711 78.1
Medtr8g467050 Medicago truncatula HOM05D006346 ORTHO05D007910 0.0e+00 1082.4 707 78.4
Ca_22901_v3 Cicer arietinum L. HOM05D006346 ORTHO05D007910 1.6e-302 1042.3 707 75.5
Thecc.09G152100 Theobroma cacao HOM05D006346 ORTHO05D007910 3.3e-287 991.5 702 71.5
Cfa020798 Carpinus fangiana HOM05D006346 ORTHO05D007910 2.8e-286 988.4 711 70.7
COL.COLO4_23953 Corchorus olitorius HOM05D006346 ORTHO05D007910 2.8e-286 988.4 671 73.8
QL02p093888 Quercus lobata HOM05D006346 ORTHO05D007910 5.2e-285 984.2 673 73.3
Potri.018G103700 Populus trichocarpa HOM05D006346 ORTHO05D007910 8.9e-285 983.4 674 73.6
Dinv42829 Davidia involucrata HOM05D006346 ORTHO05D007910 1.2e-284 983.0 666 73.7
Dinv43271 Davidia involucrata HOM05D006346 ORTHO05D007910 1.2e-284 983.0 666 73.7
Gohir.A04G059826 Gossypium hirsutum HOM05D006346 ORTHO05D007910 3.4e-284 981.5 668 73.8
Gorai.012G099000 Gossypium raimondii HOM05D006346 ORTHO05D007910 2.9e-283 978.4 668 73.2
Gohir.D04G088700 Gossypium hirsutum HOM05D006346 ORTHO05D007910 3.8e-283 978.0 668 73.4
CsaV3_2G007650 Cucumis sativus L. HOM05D006346 ORTHO05D007910 2.4e-282 975.3 706 70.3
Atru.chr7.350 Acer truncatum HOM05D006346 ORTHO05D007910 3.2e-282 974.9 669 74.6
RcHm_v2.0_Chr2g0085271 Rosa chinensis HOM05D006346 ORTHO05D007910 1.2e-281 973.0 673 72.2
FvH4_1g00650 Fragaria vesca HOM05D006346 ORTHO05D007910 3.5e-281 971.5 674 71.8
CSS0042716 Camellia sinensis var. sinensis HOM05D006346 ORTHO05D007910 4.6e-281 971.1 666 72.8
FAN28G1995 Fragaria x ananassa HOM05D006346 ORTHO05D007910 4.6e-281 971.1 674 71.8
Prupe.7G265700 Prunus persica HOM05D006346 ORTHO05D007910 2.3e-280 968.8 673 72.5
Sed0021167 Sechium edule HOM05D006346 ORTHO05D007910 8.7e-280 966.8 671 71.7
CANSAT11G2498 Cannabis sativa HOM05D006346 ORTHO05D007910 5.6e-279 964.1 674 71.4
CiPaw.15G165500 Carya illinoinensis HOM05D006346 ORTHO05D007910 2.1e-278 962.2 673 72.4
Hma1.2p1_0028F.1_g017690 Hydrangea macrophylla HOM05D006346 ORTHO05D007910 2.1e-278 962.2 678 72.3
FAN26G0534 Fragaria x ananassa HOM05D006346 ORTHO05D007910 6.9e-277 957.2 670 71.5
Ciclev10007623m.g Citrus clementina HOM05D006346 ORTHO05D007910 1.2e-276 956.4 702 68.9
TWI34G0405 Tripterygium wilfordii HOM05D006346 ORTHO05D007910 5.8e-276 954.1 673 71.5
PGR102G0252 Punica granatum HOM05D006346 ORTHO05D007910 6.4e-275 950.7 717 69.5
Sabra18G0089100 Salix brachista HOM05D006346 ORTHO05D007910 1.1e-274 949.9 726 67.8
ClCG02G014350 Citrullus lanatus HOM05D006346 ORTHO05D007910 9.3e-274 946.8 685 69.8
Nitab4.5_0003551g0040 Nicotiana tabacum HOM05D006346 ORTHO05D007910 2.7e-273 945.3 695 69.6
HanXRQChr10g0313691 Helianthus annuus HOM05D006346 ORTHO05D007910 6.0e-273 944.1 666 69.5
Lj9A719T56 Lonicera japonica HOM05D006346 ORTHO05D007910 4.3e-271 937.9 698 68.9
GSVIVG01008451001 Vitis vinifera HOM05D006346 ORTHO05D007910 5.6e-271 937.6 668 71.7
Sopen07g001980 Solanum pennellii HOM05D006346 ORTHO05D007910 1.3e-270 936.4 705 68.5
AL7G21400 Arabidopsis lyrata HOM05D006346 ORTHO05D007910 1.6e-270 936.0 675 70.7
ECA234G1139 Erigeron canadensis HOM05D006346 ORTHO05D007910 1.6e-270 936.0 668 69.3
Thhalv10024548m.g Eutrema salsugineum HOM05D006346 ORTHO05D007910 4.8e-270 934.5 676 70.1
Haze_19155 Corylus avellana HOM05D006346 ORTHO05D007910 8.1e-270 933.7 718 67.8
CAN.G160.15 Capsicum annuum HOM05D006346 ORTHO05D007910 3.1e-269 931.8 703 68.0
Rhsim01G0026600 Rhododendron simsii HOM05D006346 ORTHO05D007910 3.1e-269 931.8 701 67.6
AT4G30720 Arabidopsis thaliana HOM05D006346 ORTHO05D007910 1.2e-268 929.9 676 70.6
Nn8g39991 Nelumbo nucifera HOM05D006346 ORTHO05D007910 1.5e-268 929.5 681 69.2
THA.LOC104803912 Tarenaya hassleriana HOM05D006346 ORTHO05D007910 2.6e-268 928.7 700 66.7
Carub.0007s0978 Capsella rubella HOM05D006346 ORTHO05D007910 3.4e-268 928.3 675 69.6
MELO3C004121.2 Cucumis melo HOM05D006346 ORTHO05D007910 4.5e-268 927.9 714 67.1
PSO782G0769 Papaver somniferum HOM05D006346 ORTHO05D007910 2.2e-267 925.6 672 70.1
PSO063G0785 Papaver somniferum HOM05D006346 ORTHO05D007910 1.4e-266 922.9 672 68.8
BcaNung01563 Brassica carinata HOM05D006346 ORTHO05D007910 2.4e-266 922.2 674 69.6
vmacro16782 Vaccinium macrocarpon HOM05D006346 ORTHO05D007910 3.2e-266 921.8 679 68.5
BraA03t15070Z Brassica rapa HOM05D006346 ORTHO05D007910 4.2e-266 921.4 672 69.2
A03p60280 Brassica napus HOM05D006346 ORTHO05D007910 5.4e-266 921.0 672 69.2
DCAR_019414 Daucus carota HOM05D006346 ORTHO05D007910 1.2e-265 919.8 667 67.9
Hund08940 Selenicereus undatus HOM05D006346 ORTHO05D007910 3.5e-265 918.3 705 67.1
Sp7g28630 Schrenkiella parvula HOM05D006346 ORTHO05D007910 1.8e-264 916.0 667 69.9
Migut.J01382 Erythranthe guttata HOM05D006346 ORTHO05D007910 8.7e-264 913.7 693 67.7
Lsat_1_v5_gn_5_89421 Lactuca sativa HOM05D006346 ORTHO05D007910 8.7e-264 913.7 669 69.1
BolC7t46278H Brassica oleracea HOM05D006346 ORTHO05D007910 1.1e-263 913.3 672 68.9
BcaNung02744 Brassica carinata HOM05D006346 ORTHO05D007910 2.5e-263 912.1 675 69.0
C07p58190 Brassica napus HOM05D006346 ORTHO05D007910 2.5e-263 912.1 675 69.0
AUR62028356 Chenopodium quinoa HOM05D006346 ORTHO05D007910 2.5e-263 912.1 682 68.5
Nitab4.5_0002611g0100 Nicotiana tabacum HOM05D006346 ORTHO05D007910 4.3e-263 911.4 704 67.3
MSTRG.6156 Avicennia marina HOM05D006346 ORTHO05D007910 7.4e-263 910.6 676 67.6
Psat4g134640 Pisum sativum HOM05D006346 ORTHO05D007910 3.7e-262 908.3 618 75.1
EL10Ac8g18923 Beta vulgaris HOM05D006346 ORTHO05D007910 6.2e-262 907.5 676 68.3
Aa31LG2G19630 Aethionema arabicum HOM05D006346 ORTHO05D007910 1.4e-261 906.4 675 68.6
Cc06_g14630 Coffea canephora HOM05D006346 ORTHO05D007910 4.0e-261 904.8 669 68.3
Aqoxy7G03359 Aquilegia oxysepala HOM05D006346 ORTHO05D007910 5.3e-261 904.4 672 69.8
FAN23G2716 Fragaria x ananassa HOM05D006346 ORTHO05D007910 1.7e-259 899.4 718 64.6
SGA_v2.0_scaffold45G17017 Striga asiatica HOM05D006346 ORTHO05D007910 1.5e-255 886.3 705 65.4
Actinidia38309 Actinidia chinensis HOM05D006346 ORTHO05D007910 2.8e-254 882.1 603 73.3
Os05g0411200 Oryza sativa ssp. japonica HOM05D006346 ORTHO05D007910 5.8e-252 874.4 672 65.5
MD02G1005300 Malus domestica HOM05D006346 ORTHO05D007910 5.3e-245 851.3 627 69.9
Solyc07g005870.3 Solanum lycopersicum HOM05D006346 ORTHO05D007910 6.5e-243 844.3 702 63.7
HPP92_020605 Vanilla planifolia HOM05D006346 ORTHO05D007910 6.5e-243 844.3 670 64.0
ATR0739G030 Amborella trichopoda HOM05D006346 ORTHO05D007910 5.5e-242 841.3 595 70.1
TPR.G10032 Trifolium pratense HOM05D006346 ORTHO05D007910 4.6e-241 838.2 1282 42.7
Oeu052219.3 Olea europaea HOM05D006346 ORTHO05D007910 1.8e-240 836.3 731 59.6
Peaxi162Scf00401g00218 Petunia axillaris HOM05D006346 ORTHO05D007910 1.1e-237 827.0 686 64.0
CDE12G0948 Ceratophyllum demersum HOM05D006346 ORTHO05D007910 2.0e-236 822.8 697 62.4
Zm00001eb288040 Zea mays HOM05D006346 ORTHO05D007910 2.6e-236 822.4 652 63.2
Ah.09g228750 Amaranthus hybridus HOM05D006346 ORTHO05D007910 2.8e-230 802.4 663 62.1
SalBow1G6401 Salvia bowleyana HOM05D006346 ORTHO05D007910 1.1e-223 780.4 571 68.8
Sc14g0000950 Simmondsia chinensis HOM05D006346 ORTHO05D007910 1.5e-223 780.0 613 65.9
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 3.3e-223 778.9 632 63.3
Manes.14G142800 Manihot esculenta HOM05D006346 ORTHO05D007910 2.0e-220 769.6 556 69.4
Pp3c23_14180 Physcomitrium patens HOM05D006346 ORTHO05D007910 1.7e-187 660.2 633 54.8
AagrBONN_evm.TU.Sc2ySwM_344.1120 Anthoceros agrestis HOM05D006346 ORTHO05D007910 9.5e-186 654.4 677 51.6
SMO146G0018 Selaginella moellendorffii HOM05D006346 ORTHO05D007910 2.0e-183 646.7 629 55.0
Glyma.04G155100 Glycine max HOM05D006346 ORTHO05D007910 8.3e-182 641.3 401 80.3
Mapoly0021s0085 Marchantia polymorpha HOM05D006346 ORTHO05D007910 6.6e-179 631.7 654 51.2
Cpa.g.sc46.182 Carica papaya HOM05D006346 ORTHO05D007910 3.3e-170 602.8 400 74.5
Hma1.2p1_0028F.1_g017700 Hydrangea macrophylla HOM05D006346 ORTHO05D007910 3.0e-163 579.7 434 69.1
TAR383G0381 Trochodendron aralioides HOM05D006346 ORTHO05D007910 1.5e-146 524.2 395 68.1
Cre17.g744997 Chlamydomonas reinhardtii HOM05D006346 ORTHO05D007910 1.2e-135 488.0 718 42.2
PRCOL_00000449 Prasinoderma coloniale HOM05D006346 ORTHO05D007910 5.8e-135 485.7 627 45.0
MCO14G279 Micromonas commoda HOM05D006346 ORTHO05D007910 6.1e-132 475.7 475 53.1
Eucgr.C02507 Eucalyptus grandis HOM05D006346 ORTHO05D007910 1.8e-128 464.2 332 68.7
VMungo0251G1020 Vigna mungo HOM05D006346 ORTHO05D007910 7.7e-127 458.8 273 83.2
Eucgr.C02508 Eucalyptus grandis HOM05D006346 ORTHO05D007910 8.8e-99 365.5 312 62.8
TAR383G0466 Trochodendron aralioides HOM05D006346 ORTHO05D007910 1.3e-97 361.7 225 80.0
CAN.G160.19 Capsicum annuum HOM05D006346 ORTHO05D007910 3.4e-90 337.0 461 44.9
AUR62025356 Chenopodium quinoa HOM05D006346 ORTHO05D007910 1.9e-85 321.2 277 62.5
Cpa.g.sc46.183 Carica papaya HOM05D006346 ORTHO05D007910 9.5e-85 318.9 249 66.7
PGSC0003DMG400011203 Solanum tuberosum HOM05D006346 ORTHO05D007910 8.9e-83 312.4 203 76.4
AUR62025355 Chenopodium quinoa HOM05D006346 ORTHO05D007910 4.5e-79 300.1 203 72.4
CARHR238600 Cardamine hirsuta HOM05D006346 ORTHO05D007910 1.3e-78 298.5 251 64.9
Actinidia24372 Actinidia chinensis HOM05D006346 ORTHO05D007910 5.2e-75 286.6 655 33.7
FAN23G0300 Fragaria x ananassa HOM05D006346 ORTHO05D007910 1.6e-60 238.4 155 76.1
Glyma.04G155150 Glycine max HOM05D006346 ORTHO05D007910 1.5e-53 215.3 144 75.7
SEGI_02941 Sequoiadendron giganteum HOM05D006346 ORTHO05D007910 8.1e-52 209.5 148 72.3
CAN.G1961.3 Capsicum annuum HOM05D006346 ORTHO05D007910 4.9e-41 173.7 202 51.5
Glyma.04G155200 Glycine max HOM05D006346 ORTHO05D007910 2.5e-37 161.4 132 67.4
SEGI_30041 Sequoiadendron giganteum HOM05D006346 ORTHO05D007910 3.2e-32 144.4 102 65.7
MD15G1149600 Malus domestica HOM05D006346 ORTHO05D007910 3.4e-26 124.4 197 42.1
SalBow1G2918 Salvia bowleyana HOM05D006346 ORTHO05D007910 4.6e-23 114.0 100 60.0
SEGI_23921 Sequoiadendron giganteum HOM05D006346 ORTHO05D007910 5.3e-19 100.5 96 50.0
ECA238G2318 Erigeron canadensis HOM05D006346 ORTHO05D007910 2.9e-17 94.7 68 60.3
HanXRQChr01g0001911 Helianthus annuus HOM05D006346 ORTHO05D007910 1.1e-16 92.8 53 77.4
Rhsim01G0141500 Rhododendron simsii HOM05D006319 ORTHO05D007963 5.1e-14 84.0 170 37.1
A05p44400 Brassica napus HOM05D034890 ORTHO05D100541 4.8e-12 77.4 68 55.9


User provided reference genes

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