Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ICF70N Arachis hypogaea HOM05D006416 ORTHO05D008054 2.6e-161 572.0 292 100.0
arahy.Tifrunner.gnm1.ann1.L7FLNG Arachis hypogaea HOM05D006416 ORTHO05D008054 1.7e-160 569.3 292 99.3
Glyma.10G157100 Glycine max HOM05D006416 ORTHO05D008054 3.2e-135 485.3 297 84.8
Glyma.20G231600 Glycine max HOM05D006416 ORTHO05D008054 3.2e-135 485.3 297 84.8
Lalb_Chr06g0167821 Lupinus albus HOM05D006416 ORTHO05D008054 3.5e-134 481.9 297 85.2
Phvul.007G182400 Phaseolus vulgaris HOM05D006416 ORTHO05D008054 4.6e-134 481.5 297 83.8
Ca_10088_v3 Cicer arietinum L. HOM05D006416 ORTHO05D008054 2.0e-129 466.1 295 80.7
Psat6g148880 Pisum sativum HOM05D006416 ORTHO05D008054 6.5e-128 461.1 295 80.3
Lj5g0006935 Lotus japonicus HOM05D006416 ORTHO05D008054 8.4e-128 460.7 301 80.7
QL03p004338 Quercus lobata HOM05D006416 ORTHO05D008054 7.2e-127 457.6 297 81.5
Medtr1g082420 Medicago truncatula HOM05D006416 ORTHO05D008054 2.1e-126 456.1 295 79.3
TPR.G2722 Trifolium pratense HOM05D006416 ORTHO05D008054 1.0e-125 453.8 295 78.0
Gohir.A11G262900 Gossypium hirsutum HOM05D006416 ORTHO05D008054 5.7e-124 448.0 291 80.8
Gohir.D11G272900 Gossypium hirsutum HOM05D006416 ORTHO05D008054 3.7e-123 445.3 291 80.4
Duzib128G1696 Durio zibethinus HOM05D006416 ORTHO05D008054 1.1e-122 443.7 291 79.4
Thecc.05G308500 Theobroma cacao HOM05D006416 ORTHO05D008054 1.4e-122 443.4 291 79.4
Gorai.007G294200 Gossypium raimondii HOM05D006416 ORTHO05D008054 6.9e-122 441.0 291 79.7
Duzib177G0710 Durio zibethinus HOM05D006416 ORTHO05D008054 9.0e-122 440.7 291 79.7
Atru.chr2.491 Acer truncatum HOM05D006416 ORTHO05D008054 1.0e-120 437.2 302 76.8
Cpa.g.sc48.9 Carica papaya HOM05D006416 ORTHO05D008054 5.0e-120 434.9 293 77.1
ClCG02G016070 Citrullus lanatus HOM05D006416 ORTHO05D008054 8.5e-120 434.1 301 77.7
COL.COLO4_13518 Corchorus olitorius HOM05D006416 ORTHO05D008054 1.1e-119 433.7 293 76.8
Haze_04238 Corylus avellana HOM05D006416 ORTHO05D008054 1.4e-119 433.3 297 77.4
CiPaw.08G166800 Carya illinoinensis HOM05D006416 ORTHO05D008054 3.2e-119 432.2 298 76.5
Lj9A681T37 Lonicera japonica HOM05D006416 ORTHO05D008054 3.2e-119 432.2 300 77.3
Manes.09G163500 Manihot esculenta HOM05D006416 ORTHO05D008054 3.2e-119 432.2 290 77.6
Potri.013G026400 Populus trichocarpa HOM05D006416 ORTHO05D008054 4.2e-119 431.8 289 78.5
Ciclev10002001m.g Citrus clementina HOM05D006416 ORTHO05D008054 5.5e-119 431.4 293 77.5
FAN09G2836 Fragaria x ananassa HOM05D006416 ORTHO05D008054 5.5e-119 431.4 286 78.3
Potri.005G038700 Populus trichocarpa HOM05D006416 ORTHO05D008054 5.5e-119 431.4 289 79.6
RcHm_v2.0_Chr3g0454061 Rosa chinensis HOM05D006416 ORTHO05D008054 5.5e-119 431.4 286 79.7
Cfa006543 Carpinus fangiana HOM05D006416 ORTHO05D008054 7.2e-119 431.0 300 77.3
Nn4g26146 Nelumbo nucifera HOM05D006416 ORTHO05D008054 9.4e-119 430.6 303 76.9
MELO3C004307.2 Cucumis melo HOM05D006416 ORTHO05D008054 1.2e-118 430.3 299 77.3
FAN02G3793 Fragaria x ananassa HOM05D006416 ORTHO05D008054 1.6e-118 429.9 286 78.3
Prupe.6G330400 Prunus persica HOM05D006416 ORTHO05D008054 1.6e-118 429.9 289 78.5
FAN14G2526 Fragaria x ananassa HOM05D006416 ORTHO05D008054 7.9e-118 427.6 286 78.0
FvH4_6g05320 Fragaria vesca HOM05D006416 ORTHO05D008054 2.3e-117 426.0 286 77.6
FAN05G2936 Fragaria x ananassa HOM05D006416 ORTHO05D008054 2.3e-117 426.0 286 78.0
Sabra05G0037800 Salix brachista HOM05D006416 ORTHO05D008054 2.3e-117 426.0 289 80.3
FAN05G0060 Fragaria x ananassa HOM05D006416 ORTHO05D008054 3.9e-117 425.2 286 78.0
Rhsim07G0179600 Rhododendron simsii HOM05D006416 ORTHO05D008054 3.9e-117 425.2 291 77.0
Actinidia23608 Actinidia chinensis HOM05D006416 ORTHO05D008054 5.1e-117 424.9 290 77.2
Sed0000831 Sechium edule HOM05D006416 ORTHO05D008054 5.1e-117 424.9 284 78.5
Ah.06g190130 Amaranthus hybridus HOM05D006416 ORTHO05D008054 6.7e-117 424.5 299 76.9
FAN14G3791 Fragaria x ananassa HOM05D006416 ORTHO05D008054 6.7e-117 424.5 286 77.3
EL10Ac4g09303 Beta vulgaris HOM05D006416 ORTHO05D008054 1.5e-116 423.3 300 76.0
CANSAT54G1414 Cannabis sativa HOM05D006416 ORTHO05D008054 1.5e-116 423.3 292 77.4
GSVIVG01000004001 Vitis vinifera HOM05D006416 ORTHO05D008054 2.0e-116 422.9 300 76.3
Nn1g02093 Nelumbo nucifera HOM05D006416 ORTHO05D008054 2.2e-115 419.5 298 75.8
Nitab4.5_0007238g0010 Nicotiana tabacum HOM05D006416 ORTHO05D008054 4.8e-115 418.3 300 75.0
THA.LOC104823736 Tarenaya hassleriana HOM05D006416 ORTHO05D008054 6.3e-115 417.9 299 74.2
TAR362G1050 Trochodendron aralioides HOM05D006416 ORTHO05D008054 1.1e-114 417.2 299 74.2
Eucgr.H04456 Eucalyptus grandis HOM05D006416 ORTHO05D008054 2.4e-114 416.0 294 74.8
Oeu043843.1 Olea europaea HOM05D006416 ORTHO05D008054 2.4e-114 416.0 292 76.0
PGR031G2709 Punica granatum HOM05D006416 ORTHO05D008054 2.4e-114 416.0 288 77.8
PGSC0003DMG402028574 Solanum tuberosum HOM05D006416 ORTHO05D008054 4.1e-114 415.2 294 75.9
Nitab4.5_0004940g0060 Nicotiana tabacum HOM05D006416 ORTHO05D008054 5.3e-114 414.8 300 74.3
CAN.G1134.18 Capsicum annuum HOM05D006416 ORTHO05D008054 1.2e-113 413.7 295 75.3
Cc02_g32670 Coffea canephora HOM05D006416 ORTHO05D008054 1.2e-113 413.7 300 75.0
Sopen01g042190 Solanum pennellii HOM05D006416 ORTHO05D008054 2.0e-113 412.9 294 75.2
TWI12G1406 Tripterygium wilfordii HOM05D006416 ORTHO05D008054 2.0e-113 412.9 290 74.8
Peaxi162Scf00434g00329 Petunia axillaris HOM05D006416 ORTHO05D008054 2.6e-113 412.5 294 74.5
SpUn0002_0460 Schrenkiella parvula HOM05D006416 ORTHO05D008054 4.5e-113 411.8 293 75.4
Aa31LG2G11890 Aethionema arabicum HOM05D006416 ORTHO05D008054 1.3e-112 410.2 295 73.6
Solyc01g098640.3 Solanum lycopersicum HOM05D006416 ORTHO05D008054 2.2e-112 409.5 294 74.5
Lsat_1_v5_gn_8_116020 Lactuca sativa HOM05D006416 ORTHO05D008054 2.9e-112 409.1 298 72.5
BcaC09g49606 Brassica carinata HOM05D006416 ORTHO05D008054 1.1e-111 407.1 293 75.1
C01p34560 Brassica napus HOM05D006416 ORTHO05D008054 1.1e-111 407.1 293 75.1
BolC1t03427H Brassica oleracea HOM05D006416 ORTHO05D008054 1.1e-111 407.1 293 75.1
CsaV3_2G004910 Cucumis sativus L. HOM05D006416 ORTHO05D008054 1.4e-111 406.8 314 71.0
MD04G1209400 Malus domestica HOM05D006416 ORTHO05D008054 3.2e-111 405.6 285 74.7
MD12G1224000 Malus domestica HOM05D006416 ORTHO05D008054 3.2e-111 405.6 285 75.1
BcaB04g20144 Brassica carinata HOM05D006416 ORTHO05D008054 4.2e-111 405.2 293 74.1
A01p27150 Brassica napus HOM05D006416 ORTHO05D008054 7.2e-111 404.4 293 74.7
BraA01t02850Z Brassica rapa HOM05D006416 ORTHO05D008054 7.2e-111 404.4 293 74.7
Oeu032896.2 Olea europaea HOM05D006416 ORTHO05D008054 9.4e-111 404.1 292 74.7
MBI19_g27532_MAGBIO Magnolia biondii HOM05D006416 ORTHO05D008054 1.6e-110 403.3 299 74.9
CARHR055910 Cardamine hirsuta HOM05D006416 ORTHO05D008054 4.7e-110 401.7 292 73.3
PSO407G0317 Papaver somniferum HOM05D006416 ORTHO05D008054 4.7e-110 401.7 294 71.4
SGA_v2.0_scaffold204G41638 Striga asiatica HOM05D006416 ORTHO05D008054 6.1e-110 401.4 294 73.8
Dinv22903 Davidia involucrata HOM05D006416 ORTHO05D008054 7.9e-110 401.0 256 79.7
AL1G65240 Arabidopsis lyrata HOM05D006416 ORTHO05D008054 1.4e-109 400.2 292 71.9
Sc16g0008340 Simmondsia chinensis HOM05D006416 ORTHO05D008054 1.8e-109 399.8 295 73.6
Thhalv10023632m.g Eutrema salsugineum HOM05D006416 ORTHO05D008054 3.9e-109 398.7 292 73.6
PSO170G0754 Papaver somniferum HOM05D006416 ORTHO05D008054 6.7e-109 397.9 292 70.9
Aqoxy2G03216 Aquilegia oxysepala HOM05D006416 ORTHO05D008054 1.5e-108 396.7 298 71.1
AT1G54780 Arabidopsis thaliana HOM05D006416 ORTHO05D008054 3.3e-108 395.6 292 71.9
Carub.0002s0864 Capsella rubella HOM05D006416 ORTHO05D008054 2.8e-107 392.5 294 72.1
HanXRQChr15g0486581 Helianthus annuus HOM05D006416 ORTHO05D008054 1.1e-106 390.6 294 72.1
MSTRG.2929 Avicennia marina HOM05D006416 ORTHO05D008054 1.8e-106 389.8 295 71.5
CSS0022908 Camellia sinensis var. sinensis HOM05D006416 ORTHO05D008054 3.1e-106 389.0 296 72.6
ECA232G3707 Erigeron canadensis HOM05D006416 ORTHO05D008054 3.1e-106 389.0 236 83.5
Migut.H00517 Erythranthe guttata HOM05D006416 ORTHO05D008054 3.1e-106 389.0 266 74.8
DCAR_029435 Daucus carota HOM05D006416 ORTHO05D008054 4.1e-106 388.7 278 75.2
ATR0626G312 Amborella trichopoda HOM05D006416 ORTHO05D008054 5.3e-106 388.3 293 71.0
HanXRQChr09g0258731 Helianthus annuus HOM05D006416 ORTHO05D008054 3.5e-105 385.6 297 71.4
CDE08G0960 Ceratophyllum demersum HOM05D006416 ORTHO05D008054 5.9e-105 384.8 303 68.6
SalBow1G1453 Salvia bowleyana HOM05D006416 ORTHO05D008054 5.0e-104 381.7 264 75.8
unitig_899.g15132 Utricularia gibba HOM05D000909 ORTHO05D000928 1.5e-103 380.2 263 74.5
CDE02G0677 Ceratophyllum demersum HOM05D006416 ORTHO05D008054 3.2e-103 379.0 299 68.9
HPP92_006953 Vanilla planifolia HOM05D006416 ORTHO05D008054 2.1e-102 376.3 263 74.5
Os05g0401100 Oryza sativa ssp. japonica HOM05D006416 ORTHO05D008054 2.0e-100 369.8 234 80.3
Zm00001eb346800 Zea mays HOM05D006416 ORTHO05D008054 2.7e-97 359.4 297 66.0
AagrBONN_evm.TU.Sc2ySwM_228.2947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.9e-95 353.2 230 77.8
Pp3c7_6980 Physcomitrium patens HOM05D006416 ORTHO05D008054 1.2e-94 350.5 226 77.0
SEGI_37406 Sequoiadendron giganteum HOM05D006416 ORTHO05D008054 4.7e-94 348.6 227 76.7
Pp3c11_19220 Physcomitrium patens HOM05D006416 ORTHO05D008054 1.0e-93 347.4 250 72.0
Migut.C00218 Erythranthe guttata HOM05D006416 ORTHO05D008054 2.8e-91 339.3 216 79.2
Lalb_Chr02g0148391 Lupinus albus HOM05D006416 ORTHO05D008054 1.1e-90 337.4 215 82.3
Hma1.2p1_0666F.1_g199430 Hydrangea macrophylla HOM05D006416 ORTHO05D008054 8.8e-85 317.8 226 71.2
SMO329G0005 Selaginella moellendorffii HOM05D006416 ORTHO05D008054 3.4e-84 315.8 229 69.4
Mapoly0079s0006 Marchantia polymorpha HOM05D006416 ORTHO05D008054 1.8e-82 310.1 229 69.4
SMO353G0282 Selaginella moellendorffii HOM05D006416 ORTHO05D008054 1.4e-74 283.9 203 67.5
CBR_g30711 Chara braunii HOM05D006416 ORTHO05D008054 2.7e-73 279.6 226 62.4
Aa31LG1G5580 Aethionema arabicum HOM05D006416 ORTHO05D008054 1.5e-63 247.3 137 86.9
Hma1.2p1_0666F.1_g199440 Hydrangea macrophylla HOM05D006416 ORTHO05D008054 1.6e-57 227.3 134 80.6
MCO01G659 Micromonas commoda HOM05D006416 ORTHO05D008054 3.5e-49 199.5 210 47.6
Cre03.g182150 Chlamydomonas reinhardtii HOM05D006416 ORTHO05D008054 6.0e-49 198.7 203 46.3
arahy.Tifrunner.gnm1.ann1.SGB0EA Arachis hypogaea HOM05D006416 ORTHO05D008054 1.1e-39 167.9 87 97.7
PRCOL_00003436 Prasinoderma coloniale HOM05D006416 ORTHO05D008054 8.1e-38 161.8 222 39.6
Lalb_Chr02g0148401 Lupinus albus HOM05D006416 ORTHO05D008054 6.9e-37 158.7 83 96.4
Dinv23978 Davidia involucrata HOM05D006416 ORTHO05D008054 5.8e-36 155.6 89 86.5
Haze_01725 Corylus avellana HOM05D006416 ORTHO05D008054 1.4e-26 124.4 64 92.2


User provided reference genes

Program Settings