Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.IC24VR Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 4357.7 2424 100.0
arahy.Tifrunner.gnm1.ann1.TDMJ0N Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 4313.1 2426 98.3
Lj4g0000036 Lotus japonicus HOM05D004560 ORTHO05D005540 0.0e+00 2950.2 2489 70.4
Phvul.003G244225 Phaseolus vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 2915.2 2463 70.4
VMungo0251G0843 Vigna mungo HOM05D004560 ORTHO05D005540 0.0e+00 2902.1 2466 70.7
Glyma.17G175000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 2899.4 2474 71.1
Ca_19501_v3 Cicer arietinum L. HOM05D004560 ORTHO05D005540 0.0e+00 2786.1 2486 68.2
Glyma.05G096000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 2760.7 2471 68.9
Psat4g089080 Pisum sativum HOM05D004560 ORTHO05D005540 0.0e+00 2713.7 2539 64.0
TPR.G10251 Trifolium pratense HOM05D004560 ORTHO05D005540 0.0e+00 2699.8 2519 66.3
Lalb_Chr16g0378501 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 2317.0 2492 61.4
QL06p041719 Quercus lobata HOM05D004560 ORTHO05D005540 0.0e+00 2311.6 2546 60.2
Lalb_Chr09g0323121 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 2265.3 2496 59.5
Cfa004012 Carpinus fangiana HOM05D004560 ORTHO05D005540 0.0e+00 2246.5 2535 58.4
Prupe.7G134200 Prunus persica HOM05D004560 ORTHO05D005540 0.0e+00 2219.9 2568 57.7
Lalb_Chr09g0323141 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 2204.5 2506 59.7
Thecc.01G055000 Theobroma cacao HOM05D004560 ORTHO05D005540 0.0e+00 2158.6 2524 57.4
MD15G1283100 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 2156.3 2574 56.1
Duzib147G0064 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 2145.2 2526 57.1
CiPaw.02G008700 Carya illinoinensis HOM05D004560 ORTHO05D005540 0.0e+00 2136.3 2539 56.6
MD02G1171200 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 2129.8 2574 55.5
Ciclev10024681m.g Citrus clementina HOM05D004560 ORTHO05D005540 0.0e+00 2084.3 2533 55.2
CANSAT01G1534 Cannabis sativa HOM05D004560 ORTHO05D005540 0.0e+00 2077.0 2514 55.1
Duzib187G0053 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 2072.0 2530 56.0
CSS0026663 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 2064.7 2523 54.9
Gorai.008G075400 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 2063.5 2532 55.5
FvH4_5g28170 Fragaria vesca HOM05D004560 ORTHO05D005540 0.0e+00 2053.5 2582 54.6
FAN08G1993 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 2041.5 2589 54.5
Gohir.D12G068900 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 2034.2 2532 55.1
FAN18G2522 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 2031.9 2580 54.4
Gohir.A12G072000 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 2031.9 2530 54.8
FAN04G2449 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 2007.6 2588 53.8
Duzib264G0542 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1993.4 2526 55.0
RcHm_v2.0_Chr2g0105371 Rosa chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1986.5 2489 54.8
Manes.12G101400 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 1985.3 2533 54.4
Gohir.A12G070800 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1975.3 2529 54.0
Potri.007G043300 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 1973.7 2540 54.3
Potri.005G137700 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 1973.0 2541 55.2
Manes.12G101200 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 1955.6 2552 53.5
Gorai.008G075200 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 1946.8 2530 54.2
Gohir.D12G068700 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1934.1 2529 54.1
TWI09G1111 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1932.9 2506 54.4
Actinidia03789 Actinidia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1889.4 2524 52.2
TWI73G0239 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1883.6 2519 52.6
TAR376G0591 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1881.3 2574 51.4
Sabra05G0109900 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 1867.4 2534 51.7
ClCG01G016790 Citrullus lanatus HOM05D004560 ORTHO05D005540 0.0e+00 1841.6 2518 52.1
TWI53G0832 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1831.2 2522 51.9
COL.COLO4_11405 Corchorus olitorius HOM05D004560 ORTHO05D005540 0.0e+00 1812.0 2512 51.9
Sabra07G0038200 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 1806.2 2539 51.5
Nn1g04868 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 1801.9 2560 50.5
CsaV3_6G043220 Cucumis sativus L. HOM05D004560 ORTHO05D005540 0.0e+00 1786.9 2524 51.4
GSVIVG01022139001 Vitis vinifera HOM05D004560 ORTHO05D005540 0.0e+00 1778.5 2475 52.4
CSS0033893 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 1758.8 2197 54.2
Eucgr.I00932 Eucalyptus grandis HOM05D004560 ORTHO05D005540 0.0e+00 1746.5 2513 50.5
Dinv39857 Davidia involucrata HOM05D004560 ORTHO05D005540 0.0e+00 1745.7 2027 57.1
MBI02_g02993_MAGBIO Magnolia biondii HOM05D004560 ORTHO05D005540 0.0e+00 1744.9 2553 48.8
Lj7A70T81 Lonicera japonica HOM05D004560 ORTHO05D005540 0.0e+00 1712.6 2555 49.5
Nitab4.5_0002016g0010 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1675.6 2529 48.4
Nn5g30326 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 1674.1 2343 52.6
Nitab4.5_0001034g0140 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1669.1 2531 48.4
TAR381G0340 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1659.8 2486 49.5
CAN.G836.79 Capsicum annuum HOM05D004560 ORTHO05D005540 0.0e+00 1657.9 2511 48.5
Sed0025145 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1651.7 2517 49.6
Oeu039071.1 Olea europaea HOM05D004560 ORTHO05D005540 0.0e+00 1644.4 2540 47.4
Sopen02g035390 Solanum pennellii HOM05D004560 ORTHO05D005540 0.0e+00 1630.9 2517 48.0
Sed0014897 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1630.5 2519 49.7
vmacro17949 Vaccinium macrocarpon HOM05D004560 ORTHO05D005540 0.0e+00 1626.3 2526 48.9
Sc03g0001520 Simmondsia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1623.2 2531 48.2
Rhsim08G0100900 Rhododendron simsii HOM05D004560 ORTHO05D005540 0.0e+00 1604.0 2534 48.9
Peaxi162Scf00450g00514 Petunia axillaris HOM05D004560 ORTHO05D005540 0.0e+00 1596.3 2662 45.2
Hund13557 Selenicereus undatus HOM05D004560 ORTHO05D005540 0.0e+00 1567.0 2525 46.8
Aqoxy5G01239 Aquilegia oxysepala HOM05D004560 ORTHO05D005540 0.0e+00 1563.9 2557 45.9
AUR62003874 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1556.2 2440 46.5
PGR031G0319 Punica granatum HOM05D004560 ORTHO05D005540 0.0e+00 1540.0 2532 47.3
Solyc02g090760.4 Solanum lycopersicum HOM05D004560 ORTHO05D005540 0.0e+00 1538.5 2416 47.3
AUR62001937 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1517.7 2401 46.4
Haze_15408 Corylus avellana HOM05D004560 ORTHO05D005540 0.0e+00 1503.0 1891 55.1
ECA238G3505 Erigeron canadensis HOM05D004560 ORTHO05D005540 0.0e+00 1501.5 2503 47.2
Cc07_g19160 Coffea canephora HOM05D004560 ORTHO05D005540 0.0e+00 1486.1 2508 46.5
EL10Ac4g07947 Beta vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1452.6 2471 45.6
DCAR_014074 Daucus carota HOM05D004560 ORTHO05D005540 0.0e+00 1437.6 2516 44.8
PSO384G0851 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1409.0 2613 42.6
THA.LOC104819234 Tarenaya hassleriana HOM05D004560 ORTHO05D005540 0.0e+00 1370.9 2498 44.9
PSO135G0768 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1361.3 2614 42.4
MSTRG.23750 Avicennia marina HOM05D004560 ORTHO05D005540 0.0e+00 1341.6 2524 44.7
PSO017G5866 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1328.2 2537 41.2
PSO170G6095 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1278.8 2573 41.1
Lsat_1_v5_gn_2_84180 Lactuca sativa HOM05D004560 ORTHO05D005540 0.0e+00 1271.5 2518 43.1
HanXRQChr14g0448241 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 1268.4 2467 42.6
HanXRQChr14g0442851 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 1216.1 2459 41.4
Aa31LG4G18600 Aethionema arabicum HOM05D004560 ORTHO05D005540 0.0e+00 1199.1 2496 43.1
ATR0753G002 Amborella trichopoda HOM05D004560 ORTHO05D005540 0.0e+00 1194.1 2607 41.2
AT3G50370 Arabidopsis thaliana HOM05D004560 ORTHO05D005540 0.0e+00 1164.8 2434 42.2
Sp5g11810 Schrenkiella parvula HOM05D004560 ORTHO05D005540 0.0e+00 1162.9 2492 42.0
AL5G30500 Arabidopsis lyrata HOM05D004560 ORTHO05D005540 0.0e+00 1153.7 2482 41.0
Carub.0005s1668 Capsella rubella HOM05D004560 ORTHO05D005540 0.0e+00 1124.0 2427 41.7
TAR628G0564 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1078.9 1257 53.9
Migut.N01430 Erythranthe guttata HOM05D004560 ORTHO05D005540 8.7e-295 1018.5 2528 38.7
Thhalv10010051m.g Eutrema salsugineum HOM05D004560 ORTHO05D005540 1.9e-294 1017.3 2414 38.8
MELO3C007558.2 Cucumis melo HOM05D004560 ORTHO05D005540 2.4e-292 1010.4 1690 48.3
CARHR159850 Cardamine hirsuta HOM05D004560 ORTHO05D005540 5.0e-290 1002.7 2387 39.5
Cpa.g.sc55.157 Carica papaya HOM05D004560 ORTHO05D005540 5.7e-278 962.6 979 59.3
Oeu003960.1 Olea europaea HOM05D004560 ORTHO05D005540 2.0e-275 954.1 1774 43.1
Zm00001eb019260 Zea mays HOM05D004560 ORTHO05D005540 6.3e-261 906.0 2493 37.9
BcaB01g00621 Brassica carinata HOM05D004560 ORTHO05D005540 5.4e-236 823.2 2403 36.6
SEGI_38337 Sequoiadendron giganteum HOM05D004560 ORTHO05D005540 7.0e-228 796.2 2702 34.9
Atru.chr10.1634 Acer truncatum HOM05D004560 ORTHO05D005540 1.6e-227 795.0 1068 54.3
Actinidia16495 Actinidia chinensis HOM05D004560 ORTHO05D005540 8.1e-224 782.7 728 64.0
A09p43370 Brassica napus HOM05D004560 ORTHO05D005540 1.3e-218 765.4 2410 36.4
BraA09t39806Z Brassica rapa HOM05D004560 ORTHO05D005540 5.6e-217 760.0 2415 36.2
BcaC07g39495 Brassica carinata HOM05D004560 ORTHO05D005540 1.7e-213 748.4 2410 35.6
C08p25410 Brassica napus HOM05D004560 ORTHO05D005540 1.7e-213 748.4 2410 35.6
BolC8t50162H Brassica oleracea HOM05D004560 ORTHO05D005540 2.3e-210 738.0 2453 35.2
Cpa.g.sc55.158 Carica papaya HOM05D004560 ORTHO05D005540 8.1e-200 703.0 1034 53.2
CDE04G1181 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 9.6e-185 652.9 1932 37.1
HPP92_004113 Vanilla planifolia HOM05D004560 ORTHO05D005540 4.9e-181 640.6 2519 31.8
Haze_15410 Corylus avellana HOM05D004560 ORTHO05D005540 1.5e-177 629.0 576 64.2
CDE08G0981 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 5.5e-172 610.5 1809 33.9
TAR628G1123 Trochodendron aralioides HOM05D004560 ORTHO05D005540 1.4e-159 569.3 959 46.3
Actinidia16497 Actinidia chinensis HOM05D004560 ORTHO05D005540 1.0e-157 563.1 952 48.3
PGSC0003DMG400004537 Solanum tuberosum HOM05D004560 ORTHO05D005540 2.0e-137 495.7 459 60.1
Os03g0395600 Oryza sativa ssp. japonica HOM05D004560 ORTHO05D005540 2.3e-133 482.3 786 42.7
unitig_736.g22380 Utricularia gibba HOM05D004560 ORTHO05D005540 1.0e-125 456.8 929 38.6
FAN04G2556 Fragaria x ananassa HOM05D004560 ORTHO05D005540 1.7e-120 439.5 686 47.7
Psat2g096520 Pisum sativum HOM05D004560 ORTHO05D005540 8.1e-107 394.0 298 69.8
unitig_736.g22379 Utricularia gibba HOM05D004560 ORTHO05D005540 8.1e-107 394.0 1424 34.5
SHI34246 Sapria himalayana HOM05D004560 ORTHO05D005540 1.1e-106 393.7 1796 31.5
HPP92_004075 Vanilla planifolia HOM05D004560 ORTHO05D005540 2.9e-104 385.6 1198 33.6
Mapoly0121s0051 Marchantia polymorpha HOM05D004560 ORTHO05D005540 1.4e-95 356.7 2826 27.9
Dinv39858 Davidia involucrata HOM05D004560 ORTHO05D005540 1.9e-84 319.7 521 44.1
Pp3c7_3230 Physcomitrium patens HOM05D004560 ORTHO05D005540 1.3e-80 307.0 2801 28.6
unitig_899.g14936 Utricularia gibba HOM05D004560 ORTHO05D005540 2.7e-78 299.3 943 31.8
Pp3c11_18520 Physcomitrium patens HOM05D004560 ORTHO05D005540 6.3e-59 235.0 2721 26.4
Sed0026550 Sechium edule HOM05D004560 ORTHO05D005540 1.2e-57 230.7 502 40.8
HPP92_004077 Vanilla planifolia HOM05D004560 ORTHO05D005540 2.0e-57 229.9 1014 33.9
Pp3c11_18522 Physcomitrium patens HOM05D004560 ORTHO05D005540 2.9e-56 226.1 2778 26.0
SHI34241 Sapria himalayana HOM05D000030 ORTHO05D000009 2.0e-52 213.4 567 33.7
RcHm_v2.0_Chr2g0145051 Rosa chinensis HOM05D004560 ORTHO05D005540 2.2e-51 209.9 256 56.2
RcHm_v2.0_Chr4g0416641 Rosa chinensis HOM05D004560 ORTHO05D005540 2.8e-51 209.5 256 56.2
Psat3g009840 Pisum sativum HOM05D004560 ORTHO05D005540 1.4e-50 207.2 215 59.5
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 2.6e-49 203.0 163 70.6
Cpa.g.sc55.156 Carica papaya HOM05D004560 ORTHO05D005540 6.5e-48 198.4 227 55.5
SMO340G0113 Selaginella moellendorffii HOM05D004560 ORTHO05D005540 2.4e-42 179.9 2394 24.8
unitig_899.g14938 Utricularia gibba HOM05D004560 ORTHO05D005540 8.5e-40 171.4 311 42.1
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 1.4e-34 154.1 534 31.3
Psat2g096560 Pisum sativum HOM05D001260 ORTHO05D004134 1.9e-31 143.7 123 63.4
unitig_899.g14935 Utricularia gibba HOM05D004560 ORTHO05D005540 1.3e-27 131.0 470 31.5
Psat1g018440 Pisum sativum HOM05D004560 ORTHO05D005540 2.7e-25 123.2 77 77.9
Psat5g208000 Pisum sativum HOM05D004560 ORTHO05D005540 5.0e-24 119.0 74 78.4
Rhsim08G0115000 Rhododendron simsii HOM05D000030 ORTHO05D000009 8.5e-24 118.2 416 30.5
unitig_899.g14937 Utricularia gibba HOM05D004560 ORTHO05D005540 2.1e-22 113.6 312 33.3
CDE04G1185 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 1.5e-20 107.5 249 40.2
AagrBONN_evm.TU.Sc2ySwM_228.1624 Anthoceros agrestis HOM05D004560 ORTHO05D005540 4.1e-18 99.4 2138 26.3
Psat2g096600 Pisum sativum HOM05D004560 ORTHO05D005540 1.6e-14 87.4 93 55.9
EL10Ac9g22827 Beta vulgaris HOM05D004560 ORTHO05D005540 2.3e-13 83.6 158 40.5
RcHm_v2.0_Chr2g0105361 Rosa chinensis HOM05D004560 ORTHO05D037471 3.0e-13 83.2 76 64.5
Actinidia16496 Actinidia chinensis HOM05D004560 ORTHO05D005540 3.2e-10 73.2 230 33.9
CBR_g34112 Chara braunii HOM05D000019 ORTHO05D137378 2.3e-08 67.0 58 55.2
SHI34242 Sapria himalayana HOM05D004560 ORTHO05D005540 1.1e-07 64.7 84 48.8
Oeu003961.1 Olea europaea HOM05D004560 ORTHO05D005540 1.2e-06 61.2 112 39.3
Lsat_1_v5_gn_3_15640 Lactuca sativa HOM05D003881 ORTHO05D004343 2.8e-06 60.1 100 41.0


User provided reference genes

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