Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.IB7BS1 Arachis hypogaea HOM05D006030 ORTHO05D007475 1.6e-147 526.2 283 100.0
arahy.Tifrunner.gnm1.ann1.Z0KP5S Arachis hypogaea HOM05D006030 ORTHO05D007475 6.0e-147 524.2 283 99.6
TPR.G26249 Trifolium pratense HOM05D006030 ORTHO05D007475 4.7e-83 312.0 297 60.9
Glyma.15G092100 Glycine max HOM05D006030 ORTHO05D007475 6.1e-83 311.6 301 60.1
Medtr2g018890 Medicago truncatula HOM05D006030 ORTHO05D007475 3.0e-82 309.3 298 58.7
Lj6g0008094 Lotus japonicus HOM05D006030 ORTHO05D007475 2.0e-81 306.6 305 58.4
Lalb_Chr20g0117731 Lupinus albus HOM05D006030 ORTHO05D007475 9.8e-81 304.3 297 59.9
Glyma.13G220300 Glycine max HOM05D006030 ORTHO05D007475 8.3e-80 301.2 299 59.2
Ca_00520_v3 Cicer arietinum L. HOM05D006030 ORTHO05D007475 1.1e-79 300.8 305 59.3
Lalb_Chr15g0086701 Lupinus albus HOM05D006030 ORTHO05D007475 7.0e-79 298.1 297 58.6
Lalb_Chr18g0055221 Lupinus albus HOM05D006030 ORTHO05D007475 6.0e-78 295.0 288 59.0
Psat1g191320 Pisum sativum HOM05D006030 ORTHO05D007475 7.3e-76 288.1 297 58.2
Phvul.006G167100 Phaseolus vulgaris HOM05D006030 ORTHO05D007475 4.7e-75 285.4 301 56.8
VMungo0540G2189 Vigna mungo HOM05D006030 ORTHO05D007475 1.1e-74 284.3 303 56.4
Cfa000873 Carpinus fangiana HOM05D006030 ORTHO05D007475 9.2e-63 244.6 300 51.3
MD10G1256000 Malus domestica HOM05D006030 ORTHO05D007475 1.9e-60 236.9 299 49.2
Atru.chr10.1031 Acer truncatum HOM05D006030 ORTHO05D007475 4.3e-60 235.7 308 50.0
Prupe.4G087600 Prunus persica HOM05D006030 ORTHO05D007475 1.6e-59 233.8 300 48.0
Haze_05717 Corylus avellana HOM05D006030 ORTHO05D007475 4.7e-59 232.3 302 50.3
Ciclev10015995m.g Citrus clementina HOM05D006030 ORTHO05D007475 1.1e-58 231.1 302 49.3
TWI09G0666 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 4.0e-58 229.2 298 49.0
CiPaw.09G117700 Carya illinoinensis HOM05D006030 ORTHO05D007475 1.2e-57 227.6 301 49.5
Potri.011G091700 Populus trichocarpa HOM05D006030 ORTHO05D007475 1.5e-57 227.3 293 50.5
TWI53G0643 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 1.7e-56 223.8 297 49.5
Manes.15G125900 Manihot esculenta HOM05D006030 ORTHO05D007475 2.9e-56 223.0 292 48.6
TAR627G0722 Trochodendron aralioides HOM05D006030 ORTHO05D007475 3.8e-56 222.6 301 48.2
QL05p054330 Quercus lobata HOM05D006030 ORTHO05D007475 4.9e-56 222.2 302 49.0
Nitab4.5_0000315g0160 Nicotiana tabacum HOM05D006030 ORTHO05D007475 4.1e-55 219.2 309 46.6
MD05G1060100 Malus domestica HOM05D006030 ORTHO05D007475 7.1e-55 218.4 298 45.6
Nitab4.5_0008802g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 1.2e-54 217.6 305 46.2
Dinv21492 Davidia involucrata HOM05D006030 ORTHO05D007475 3.5e-54 216.1 300 48.0
Sabra11G0085900 Salix brachista HOM05D006030 ORTHO05D007475 7.8e-54 214.9 292 47.9
TAR624G0353 Trochodendron aralioides HOM05D006030 ORTHO05D007475 7.8e-54 214.9 301 45.8
Sp6g03610 Schrenkiella parvula HOM05D006030 ORTHO05D007475 1.7e-53 213.8 308 46.4
Hma1.2p1_0689F.1_g203740 Hydrangea macrophylla HOM05D006030 ORTHO05D007475 8.7e-53 211.5 306 47.4
Thecc.02G010100 Theobroma cacao HOM05D006030 ORTHO05D007475 1.5e-52 210.7 298 48.0
FAN11G1717 Fragaria x ananassa HOM05D006030 ORTHO05D007475 1.9e-52 210.3 301 48.2
FvH4_3g09520 Fragaria vesca HOM05D006030 ORTHO05D007475 5.6e-52 208.8 301 48.2
Peaxi162Scf00045g00235 Petunia axillaris HOM05D000253 ORTHO05D000149 5.6e-52 208.8 299 44.5
CARHR252040 Cardamine hirsuta HOM05D006030 ORTHO05D007475 7.3e-52 208.4 306 43.8
Duzib132G1046 Durio zibethinus HOM05D006030 ORTHO05D007475 9.6e-52 208.0 300 49.3
Manes.17G075000 Manihot esculenta HOM05D006030 ORTHO05D007475 9.6e-52 208.0 306 44.4
arahy.Tifrunner.gnm1.ann1.DKT922 Arachis hypogaea HOM05D006030 ORTHO05D007475 1.2e-51 207.6 256 51.2
Carub.0006s3344 Capsella rubella HOM05D006030 ORTHO05D007475 2.1e-51 206.8 308 45.1
FAN16G0477 Fragaria x ananassa HOM05D006030 ORTHO05D007475 3.6e-51 206.1 301 47.8
FAN25G1233 Fragaria x ananassa HOM05D006030 ORTHO05D007475 3.6e-51 206.1 301 48.2
arahy.Tifrunner.gnm1.ann1.TN2AI9 Arachis hypogaea HOM05D006030 ORTHO05D007475 4.7e-51 205.7 256 50.8
FAN21G0577 Fragaria x ananassa HOM05D006030 ORTHO05D007475 8.1e-51 204.9 301 47.8
CSS0019216 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 2.4e-50 203.4 298 46.6
Peaxi162Scf00333g00215 Petunia axillaris HOM05D006030 ORTHO05D007475 6.9e-50 201.8 262 45.4
Rhsim02G0159700 Rhododendron simsii HOM05D006030 ORTHO05D007475 6.9e-50 201.8 297 46.1
Thhalv10029201m.g Eutrema salsugineum HOM05D006030 ORTHO05D007475 2.0e-49 200.3 307 44.3
RcHm_v2.0_Chr5g0015101 Rosa chinensis HOM05D006030 ORTHO05D007475 2.0e-49 200.3 300 44.3
CSS0008742 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 2.6e-49 199.9 305 45.6
THA.LOC104806979 Tarenaya hassleriana HOM05D006030 ORTHO05D007475 5.8e-49 198.7 301 43.2
BcaB01g01909 Brassica carinata HOM05D006030 ORTHO05D007475 9.9e-49 198.0 306 43.8
Actinidia39595 Actinidia chinensis HOM05D006030 ORTHO05D007475 1.3e-48 197.6 297 45.5
C09p02960 Brassica napus HOM05D006030 ORTHO05D007475 2.2e-48 196.8 307 44.0
AL6G49160 Arabidopsis lyrata HOM05D006030 ORTHO05D007475 3.8e-48 196.1 308 43.5
A09p02880 Brassica napus HOM05D006030 ORTHO05D007475 6.4e-48 195.3 308 43.5
ClCG03G006430 Citrullus lanatus HOM05D006030 ORTHO05D007475 6.4e-48 195.3 298 46.6
Aa31LG9G8890 Aethionema arabicum HOM05D006030 ORTHO05D007475 8.4e-48 194.9 306 44.4
BraA09t35933Z Brassica rapa HOM05D006030 ORTHO05D007475 1.1e-47 194.5 307 43.6
Sed0007526 Sechium edule HOM05D006030 ORTHO05D007475 1.1e-47 194.5 285 44.9
CSS0023088 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 1.4e-47 194.1 294 46.3
CANSAT35G1388 Cannabis sativa HOM05D006030 ORTHO05D007475 2.4e-47 193.4 325 41.5
MELO3C002779.2 Cucumis melo HOM05D006030 ORTHO05D007475 1.6e-46 190.7 295 45.1
CsaV3_1G036960 Cucumis sativus L. HOM05D006030 ORTHO05D007475 1.6e-46 190.7 301 44.2
PGSC0003DMG400005380 Solanum tuberosum HOM05D006030 ORTHO05D007475 2.7e-46 189.9 296 42.2
AT4G03620 Arabidopsis thaliana HOM05D006030 ORTHO05D007475 3.5e-46 189.5 317 42.6
BcaC04g23958 Brassica carinata HOM05D006030 ORTHO05D007475 3.5e-46 189.5 307 43.0
BolC9t53223H Brassica oleracea HOM05D006030 ORTHO05D007475 3.5e-46 189.5 307 43.0
Aqoxy1G01654 Aquilegia oxysepala HOM05D006030 ORTHO05D007475 4.6e-46 189.1 293 42.0
COL.COLO4_17663 Corchorus olitorius HOM05D006030 ORTHO05D007475 7.8e-46 188.3 311 40.8
Duzib052G0461 Durio zibethinus HOM05D006030 ORTHO05D007475 7.8e-46 188.3 241 49.0
Eucgr.E02463 Eucalyptus grandis HOM05D006030 ORTHO05D007475 7.8e-46 188.3 244 45.1
Sc05g0005830 Simmondsia chinensis HOM05D006030 ORTHO05D007475 7.8e-46 188.3 294 41.2
MBI18_g10587_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 2.3e-45 186.8 290 43.4
PGR031G1516 Punica granatum HOM05D006030 ORTHO05D007475 3.0e-45 186.4 304 42.4
Cc09_g08600 Coffea canephora HOM05D006030 ORTHO05D007475 1.1e-44 184.5 318 43.1
Solyc08g023270.3 Solanum lycopersicum HOM05D006030 ORTHO05D007475 1.5e-44 184.1 294 41.2
Sopen08g008180 Solanum pennellii HOM05D006030 ORTHO05D007475 1.5e-44 184.1 294 41.2
Nitab4.5_0002900g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 3.3e-44 183.0 258 41.9
Nitab4.5_0000717g0050 Nicotiana tabacum HOM05D006030 ORTHO05D007475 7.3e-44 181.8 258 41.9
Lj2A324T65 Lonicera japonica HOM05D006030 ORTHO05D007475 2.8e-43 179.9 298 43.3
AUR62030127 Chenopodium quinoa HOM05D006030 ORTHO05D007475 6.2e-43 178.7 301 41.5
Nn3g20281 Nelumbo nucifera HOM05D006030 ORTHO05D007475 3.1e-42 176.4 246 45.5
Lj1A1167T61 Lonicera japonica HOM05D006030 ORTHO05D007475 5.3e-42 175.6 301 42.2
MSTRG.14783 Avicennia marina HOM05D006030 ORTHO05D007475 6.9e-42 175.3 313 43.5
SalBow8G3821 Salvia bowleyana HOM05D006030 ORTHO05D007475 6.9e-42 175.3 254 42.5
EL10Ac8g19610 Beta vulgaris HOM05D006030 ORTHO05D007475 2.0e-41 173.7 309 41.7
AUR62002659 Chenopodium quinoa HOM05D006030 ORTHO05D007475 2.0e-41 173.7 300 41.0
CAN.G36.30 Capsicum annuum HOM05D006030 ORTHO05D007475 7.6e-41 171.8 299 40.5
DCAR_007858 Daucus carota HOM05D006030 ORTHO05D007475 3.8e-40 169.5 263 42.6
PSO541G2924 Papaver somniferum HOM05D006030 ORTHO05D007475 3.8e-40 169.5 303 40.6
Sed0012497 Sechium edule HOM05D006030 ORTHO05D007475 3.8e-40 169.5 297 42.4
Sopen02g005930 Solanum pennellii HOM05D006030 ORTHO05D007475 4.9e-40 169.1 290 40.3
Solyc02g021450.2 Solanum lycopersicum HOM05D006030 ORTHO05D007475 3.2e-39 166.4 290 39.3
SGA_v2.0_scaffold51G18644 Striga asiatica HOM05D006030 ORTHO05D007475 3.2e-39 166.4 249 43.0
Nn4g26650 Nelumbo nucifera HOM05D006030 ORTHO05D007475 4.2e-39 166.0 253 42.3
PGSC0003DMG400031336 Solanum tuberosum HOM05D006030 ORTHO05D007475 7.1e-39 165.2 290 40.0
MBI02_g11375_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 2.1e-38 163.7 240 43.8
ECA236G5152 Erigeron canadensis HOM05D006030 ORTHO05D007475 3.5e-38 162.9 255 42.0
Migut.H01344 Erythranthe guttata HOM05D006030 ORTHO05D007475 7.9e-38 161.8 324 39.8
Hund21555 Selenicereus undatus HOM05D006030 ORTHO05D007475 7.9e-38 161.8 267 42.3
DCAR_027876 Daucus carota HOM05D006030 ORTHO05D007475 5.1e-37 159.1 293 37.2
PSO675G1541 Papaver somniferum HOM05D006030 ORTHO05D007475 8.7e-37 158.3 293 40.3
PSO541G2932 Papaver somniferum HOM05D006030 ORTHO05D007475 4.3e-36 156.0 266 41.4
Lsat_1_v5_gn_1_116040 Lactuca sativa HOM05D006030 ORTHO05D007475 7.4e-36 155.2 252 40.1
HanXRQChr15g0481561 Helianthus annuus HOM05D006030 ORTHO05D007475 9.6e-36 154.8 255 39.2
Ah.09g232450 Amaranthus hybridus HOM05D006030 ORTHO05D007475 2.1e-35 153.7 283 38.5
SalBow7G1462 Salvia bowleyana HOM05D006030 ORTHO05D007475 1.4e-34 151.0 319 36.7
SalBow7G3121 Salvia bowleyana HOM05D006030 ORTHO05D007475 1.4e-34 151.0 319 36.7
HanXRQChr04g0112111 Helianthus annuus HOM05D006030 ORTHO05D007475 9.0e-34 148.3 255 38.0
PSO675G3639 Papaver somniferum HOM05D006030 ORTHO05D007475 7.6e-33 145.2 280 37.9
DCAR_003876 Daucus carota HOM05D006030 ORTHO05D007475 4.2e-31 139.4 219 42.0
Cpa.g.sc17.66 Carica papaya HOM05D006030 ORTHO05D007475 1.9e-28 130.6 154 51.3
GSVIVG01021577001 Vitis vinifera HOM05D006030 ORTHO05D007475 4.3e-28 129.4 197 47.7
Lsat_1_v5_gn_7_32280 Lactuca sativa HOM05D006030 ORTHO05D007475 9.0e-26 121.7 249 36.5
MSTRG.13261 Avicennia marina HOM05D006030 ORTHO05D007475 1.9e-23 114.0 268 35.4
ATR0626G038 Amborella trichopoda HOM05D006030 ORTHO05D007475 2.5e-23 113.6 200 40.0
unitig_37.g12083 Utricularia gibba HOM05D006030 ORTHO05D007475 9.0e-18 95.1 170 38.8
Migut.M01870 Erythranthe guttata HOM05D006030 ORTHO05D007475 6.5e-16 89.0 102 52.0
HPP92_019506 Vanilla planifolia HOM05D006030 ORTHO05D007475 1.1e-15 88.2 285 31.6
SEGI_26103 Sequoiadendron giganteum HOM05D006030 ORTHO05D007475 3.2e-15 86.7 200 32.5
Nn1g09396 Nelumbo nucifera HOM05D006030 ORTHO05D007475 3.2e-07 60.1 161 32.3
Duzib248G1648 Durio zibethinus HOM05D006030 ORTHO05D007475 1.2e-06 58.2 81 44.4
SGA_v2.0_scaffold106G30660 Striga asiatica HOM05D006030 ORTHO05D007475 7.9e-06 55.5 86 41.9


User provided reference genes

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