Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.I9YN8I Arachis hypogaea HOM05D001966 ORTHO05D007227 5.2e-75 284.3 140 100.0
arahy.Tifrunner.gnm1.ann1.77ZW6W Arachis hypogaea HOM05D001966 ORTHO05D007227 1.1e-64 250.0 144 86.8
arahy.Tifrunner.gnm1.ann1.EGZ6K4 Arachis hypogaea HOM05D001966 ORTHO05D007227 1.1e-64 250.0 144 86.8
arahy.Tifrunner.gnm1.ann1.6ZZ12G Arachis hypogaea HOM05D001966 ORTHO05D007227 7.3e-61 237.3 144 81.9
arahy.Tifrunner.gnm1.ann1.KZKE62 Arachis hypogaea HOM05D001966 ORTHO05D007227 2.5e-53 212.2 126 84.9
arahy.Tifrunner.gnm1.ann1.ZHN7AL Arachis hypogaea HOM05D001966 ORTHO05D007227 1.7e-41 172.9 94 87.2
arahy.Tifrunner.gnm1.ann1.WI2XKB Arachis hypogaea HOM05D001966 ORTHO05D007227 1.4e-40 169.9 94 86.2
HPP92_028396 Vanilla planifolia HOM05D001966 ORTHO05D007227 1.4e-40 169.9 138 65.2
HPP92_028404 Vanilla planifolia HOM05D001966 ORTHO05D007227 1.4e-40 169.9 138 65.2
HPP92_028413 Vanilla planifolia HOM05D001966 ORTHO05D007227 1.4e-40 169.9 138 65.2
HPP92_028421 Vanilla planifolia HOM05D001966 ORTHO05D007227 1.4e-40 169.9 138 65.2
HPP92_028428 Vanilla planifolia HOM05D001966 ORTHO05D007227 1.4e-40 169.9 138 65.2
HPP92_028434 Vanilla planifolia HOM05D001966 ORTHO05D007227 1.4e-40 169.9 138 65.2
arahy.Tifrunner.gnm1.ann1.JURL6Q Arachis hypogaea HOM05D001966 ORTHO05D007227 1.9e-40 169.5 94 85.1
Cfa023004 Carpinus fangiana HOM05D001966 ORTHO05D007227 3.9e-38 161.8 94 83.0
ClCG02G009760 Citrullus lanatus HOM05D001966 ORTHO05D000002 8.7e-38 160.6 94 81.9
RhsimPtG0005300 Rhododendron simsii HOM05D001966 ORTHO05D007227 3.3e-37 158.7 94 81.9
Medtr0002s0250 Medicago truncatula HOM05D001966 ORTHO05D007227 5.6e-37 157.9 94 80.9
Medtr3g035620 Medicago truncatula HOM05D001966 ORTHO05D007227 5.6e-37 157.9 94 80.9
Sed0014217 Sechium edule HOM05D001966 ORTHO05D007227 7.3e-37 157.5 94 79.8
CDE02G0843 Ceratophyllum demersum HOM05D001966 ORTHO05D007227 4.8e-36 154.8 92 80.4
EL10As10g23965 Beta vulgaris HOM05D001966 ORTHO05D007227 8.1e-36 154.1 112 72.3
HPP92_028385 Vanilla planifolia HOM05D001966 ORTHO05D007227 8.1e-36 154.1 94 77.7
arahy.Tifrunner.gnm1.ann1.3I0RGA Arachis hypogaea HOM05D001966 ORTHO05D007227 2.4e-35 152.5 91 78.0
Sc25g0002010 Simmondsia chinensis HOM05D001966 ORTHO05D007227 1.5e-34 149.8 96 78.1
DCAR_001522 Daucus carota HOM05D001966 ORTHO05D007227 9.9e-34 147.1 94 76.6
EL10As6g23662 Beta vulgaris HOM05D001325 ORTHO05D001540 1.6e-31 139.8 83 79.5
EL10Ac8g19705 Beta vulgaris HOM05D001966 ORTHO05D007227 1.3e-30 136.7 96 72.9
LjContig00319g0014927 Lotus japonicus HOM05D001966 ORTHO05D007227 5.1e-30 134.8 95 72.6
arahy.Tifrunner.gnm1.ann1.8D90VP Arachis hypogaea HOM05D001966 ORTHO05D007227 1.9e-29 132.9 122 60.7
arahy.Tifrunner.gnm1.ann1.FN7561 Arachis hypogaea HOM05D001966 ORTHO05D007227 7.4e-29 131.0 106 67.9
SHI36394 Sapria himalayana HOM05D001966 ORTHO05D007227 1.8e-27 126.3 77 79.2
Hma1.2p1_0544F.1_g175783 Hydrangea macrophylla HOM05D001966 ORTHO05D007227 7.6e-26 120.9 68 82.4
VMungo0720G2248 Vigna mungo HOM05D001966 ORTHO05D007227 9.9e-26 120.6 67 80.6
SHI36539 Sapria himalayana HOM05D001966 ORTHO05D007227 1.7e-25 119.8 73 80.8
VMungo1127G1224 Vigna mungo HOM05D001966 ORTHO05D007227 2.2e-25 119.4 67 79.1
Gohir.1Z049882 Gossypium hirsutum HOM05D001966 ORTHO05D007227 3.8e-25 118.6 71 80.3
Gohir.A04G039270 Gossypium hirsutum HOM05D001966 ORTHO05D007227 3.8e-25 118.6 71 80.3
Gohir.A05G323724 Gossypium hirsutum HOM05D001966 ORTHO05D007227 3.8e-25 118.6 71 80.3
AL9U11930 Arabidopsis lyrata HOM05D001966 ORTHO05D007227 4.2e-24 115.2 68 77.9
VMungo0464G1535 Vigna mungo HOM05D001966 ORTHO05D007227 4.2e-24 115.2 67 77.6
Phvul.003G067400 Phaseolus vulgaris HOM05D001966 ORTHO05D007227 7.1e-24 114.4 67 74.6
Sed0012652 Sechium edule HOM05D001966 ORTHO05D007227 1.2e-23 113.6 105 59.0
C09p24670 Brassica napus HOM05D001966 ORTHO05D007227 2.1e-23 112.8 68 76.5
C09p39340 Brassica napus HOM05D001966 ORTHO05D007227 2.1e-23 112.8 68 76.5
Potri.011G074201 Populus trichocarpa HOM05D001966 ORTHO05D007227 4.6e-23 111.7 60 83.3
BolSC29t60539H Brassica oleracea HOM05D001966 ORTHO05D007227 7.9e-23 110.9 63 81.0
BolSC29t60556H Brassica oleracea HOM05D001966 ORTHO05D007227 7.9e-23 110.9 63 81.0
BolSC35t60713H Brassica oleracea HOM05D001966 ORTHO05D007227 7.9e-23 110.9 63 81.0
BolSC44t60814H Brassica oleracea HOM05D001966 ORTHO05D007227 7.9e-23 110.9 63 81.0
BolSC45t60900H Brassica oleracea HOM05D001966 ORTHO05D007227 7.9e-23 110.9 63 81.0
BolSC45t60918H Brassica oleracea HOM05D001966 ORTHO05D007227 7.9e-23 110.9 63 81.0
BolSC46t60967H Brassica oleracea HOM05D001966 ORTHO05D007227 7.9e-23 110.9 63 81.0
BolSC49t61133H Brassica oleracea HOM05D001966 ORTHO05D007227 7.9e-23 110.9 63 81.0
BraSC103t45419Z Brassica rapa HOM05D001966 ORTHO05D007227 7.9e-23 110.9 63 81.0
BraSC25t45921Z Brassica rapa HOM05D001966 ORTHO05D007227 7.9e-23 110.9 63 81.0
BraSC59t46509Z Brassica rapa HOM05D001966 ORTHO05D007227 7.9e-23 110.9 63 81.0
BraSC59t46540Z Brassica rapa HOM05D001966 ORTHO05D007227 7.9e-23 110.9 63 81.0
Lsat_1_v5_gn_2_20521 Lactuca sativa HOM05D001966 ORTHO05D007227 1.8e-22 109.8 63 79.4
Lsat_1_v5_gn_3_110440 Lactuca sativa HOM05D001966 ORTHO05D007227 1.8e-22 109.8 63 79.4
Lsat_1_v5_gn_4_147680 Lactuca sativa HOM05D001966 ORTHO05D007227 1.8e-22 109.8 63 79.4
Lsat_1_v5_gn_4_147860 Lactuca sativa HOM05D001966 ORTHO05D007227 1.8e-22 109.8 63 79.4
Lsat_1_v5_gn_5_181880 Lactuca sativa HOM05D001966 ORTHO05D007227 1.8e-22 109.8 63 79.4
Lsat_1_v5_gn_9_39281 Lactuca sativa HOM05D001966 ORTHO05D007227 1.8e-22 109.8 63 79.4
Glyma.08G276350 Glycine max HOM05D001966 ORTHO05D007227 3.0e-22 109.0 94 53.2
Lsat_1_v5_gn_6_94301 Lactuca sativa HOM05D001966 ORTHO05D007227 3.0e-22 109.0 63 79.4
arahy.Tifrunner.gnm1.ann1.EF1F4B Arachis hypogaea HOM05D000963 ORTHO05D010073 5.6e-21 104.8 87 71.3
Aqoxy2G01968 Aquilegia oxysepala HOM05D001966 ORTHO05D007227 9.6e-21 104.0 60 76.7
Gohir.D02G016950 Gossypium hirsutum HOM05D001966 ORTHO05D007227 9.6e-21 104.0 82 63.4
Sc05g0004050 Simmondsia chinensis HOM05D001966 ORTHO05D007227 1.3e-20 103.6 107 56.1
Gorai.005G020800 Gossypium raimondii HOM05D001966 ORTHO05D007227 1.4e-19 100.1 100 56.0
arahy.Tifrunner.gnm1.ann1.F2PHFK Arachis hypogaea HOM05D000890 ORTHO05D000697 1.8e-19 99.8 49 87.8
Glyma.05G084525 Glycine max HOM05D001966 ORTHO05D007227 1.8e-19 99.8 68 66.2
ClCG11G009300 Citrullus lanatus HOM05D001966 ORTHO05D007227 2.4e-19 99.4 55 80.0
BcaC04g20781 Brassica carinata HOM05D001966 ORTHO05D010449 6.9e-19 97.8 57 77.2
BcaNung07085 Brassica carinata HOM05D001966 ORTHO05D010449 6.9e-19 97.8 57 77.2
HanXRQChr05g0134861 Helianthus annuus HOM05D001966 ORTHO05D007227 1.2e-18 97.1 58 75.9
FvH4_c3g00070 Fragaria vesca HOM05D001966 ORTHO05D007227 2.6e-18 95.9 65 75.4
Glyma.09G133875 Glycine max HOM05D001966 ORTHO05D007227 3.4e-18 95.5 60 71.7
Sed0001460 Sechium edule HOM05D001966 ORTHO05D007227 1.3e-17 93.6 52 78.8
FAN01G2668 Fragaria x ananassa HOM05D001966 ORTHO05D007227 1.7e-17 93.2 65 73.8
Lsat_1_v5_gn_3_13340 Lactuca sativa HOM05D001966 ORTHO05D007227 2.9e-17 92.4 56 75.0
BolSC29t60498H Brassica oleracea HOM05D001966 ORTHO05D007227 4.2e-16 88.6 49 79.6
BolSC35t60683H Brassica oleracea HOM05D001966 ORTHO05D007227 4.2e-16 88.6 49 79.6
BolSC44t60831H Brassica oleracea HOM05D001966 ORTHO05D007227 4.2e-16 88.6 49 79.6
arahy.Tifrunner.gnm1.ann1.Q8ISGW Arachis hypogaea HOM05D001966 ORTHO05D007227 1.3e-14 83.6 46 80.4
arahy.Tifrunner.gnm1.ann1.ZUEQ40 Arachis hypogaea HOM05D000743 ORTHO05D007227 3.0e-14 82.4 56 71.4
Peaxi162Scf00080g00518 Petunia axillaris HOM05D001966 ORTHO05D007227 5.1e-14 81.6 52 71.2
Sed0026700 Sechium edule HOM05D001966 ORTHO05D007227 1.1e-13 80.5 94 50.0
CAN.G1441.4 Capsicum annuum HOM05D001966 ORTHO05D007227 3.3e-13 79.0 53 71.7
Gohir.D02G151976 Gossypium hirsutum HOM05D001966 ORTHO05D010449 4.3e-13 78.6 79 55.7
Atru.chr9.266 Acer truncatum HOM05D001966 ORTHO05D007227 7.4e-13 77.8 47 83.0
TPR.G6399 Trifolium pratense HOM05D001966 ORTHO05D007227 1.6e-12 76.6 62 62.9
arahy.Tifrunner.gnm1.ann1.N1DH3R Arachis hypogaea HOM05D001966 ORTHO05D007227 2.8e-12 75.9 58 65.5
Gorai.006G045900 Gossypium raimondii HOM05D001966 ORTHO05D007227 3.7e-12 75.5 50 70.0
EL10As15g24131 Beta vulgaris HOM05D001966 ORTHO05D007227 4.8e-12 75.1 52 69.2
ECA247G0757 Erigeron canadensis HOM05D000006 ORTHO05D000001 4.8e-12 75.1 145 38.6
FAN13G0121 Fragaria x ananassa HOM05D001966 ORTHO05D007227 1.1e-11 73.9 65 63.1
HPP92_008300 Vanilla planifolia HOM05D001966 ORTHO05D007227 1.4e-11 73.6 58 65.5
Psat5g118880 Pisum sativum HOM05D001966 ORTHO05D007227 3.4e-10 68.9 48 72.9
Hma1.2p1_0544F.1_g175786 Hydrangea macrophylla HOM05D001966 ORTHO05D007227 5.9e-10 68.2 37 81.1
LjContig00318g0013893 Lotus japonicus HOM05D004182 ORTHO05D007321 2.2e-09 66.2 69 53.6
LjContig00489g0013211 Lotus japonicus HOM05D001966 ORTHO05D007227 2.2e-09 66.2 101 43.6
Sed0008904 Sechium edule HOM05D001966 ORTHO05D007227 4.2e-08 62.0 48 54.2
arahy.Tifrunner.gnm1.ann1.WHCD0B Arachis hypogaea HOM05D001966 ORTHO05D007227 2.1e-07 59.7 95 38.9
Gohir.A09G039165 Gossypium hirsutum HOM05D001966 ORTHO05D007227 1.0e-06 57.4 49 55.1


User provided reference genes

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