Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.A7XXX8 Arachis hypogaea HOM05D005277 ORTHO05D006319 1.3e-50 202.6 91 100.0
arahy.Tifrunner.gnm1.ann1.I9WHAY Arachis hypogaea HOM05D005277 ORTHO05D006319 1.3e-50 202.6 91 100.0
Potri.002G155800 Populus trichocarpa HOM05D005277 ORTHO05D006319 2.0e-43 178.7 91 86.8
Potri.014G079800 Populus trichocarpa HOM05D005277 ORTHO05D006319 2.2e-42 175.3 91 84.6
Lj1g0008169 Lotus japonicus HOM05D005277 ORTHO05D006319 6.4e-42 173.7 90 84.4
Manes.01G260200 Manihot esculenta HOM05D005277 ORTHO05D006319 3.2e-41 171.4 90 83.3
Thhalv10029049m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 2.1e-40 168.7 86 84.9
Manes.05G038000 Manihot esculenta HOM05D005277 ORTHO05D006319 2.1e-40 168.7 90 82.2
TPR.G37794 Trifolium pratense HOM05D005277 ORTHO05D006319 2.1e-40 168.7 89 83.1
Lalb_Chr19g0127071 Lupinus albus HOM05D005277 ORTHO05D006319 2.7e-40 168.3 91 83.5
Aa31LG5G410 Aethionema arabicum HOM05D005277 ORTHO05D006319 3.5e-40 167.9 86 84.9
FAN01G0371 Fragaria x ananassa HOM05D005277 ORTHO05D006319 3.5e-40 167.9 83 85.5
FAN06G3712 Fragaria x ananassa HOM05D005277 ORTHO05D006319 3.5e-40 167.9 83 85.5
FAN06G3877 Fragaria x ananassa HOM05D005277 ORTHO05D006319 3.5e-40 167.9 83 85.5
CARHR248750 Cardamine hirsuta HOM05D005277 ORTHO05D006319 4.6e-40 167.5 90 83.3
Thhalv10026679m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 4.6e-40 167.5 90 83.3
Duzib133G1303 Durio zibethinus HOM05D005277 ORTHO05D006319 6.0e-40 167.2 86 86.0
Nn1g01427 Nelumbo nucifera HOM05D005277 ORTHO05D006319 6.0e-40 167.2 86 84.9
Sp6g00620 Schrenkiella parvula HOM05D005277 ORTHO05D006319 6.0e-40 167.2 86 82.6
MBI07_g12793_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 7.9e-40 166.8 88 81.8
COL.COLO4_12662 Corchorus olitorius HOM05D005277 ORTHO05D006319 1.0e-39 166.4 91 82.4
RcHm_v2.0_Chr1g0353371 Rosa chinensis HOM05D005277 ORTHO05D006319 1.0e-39 166.4 84 84.5
Cfa003961 Carpinus fangiana HOM05D005277 ORTHO05D006319 1.3e-39 166.0 84 88.1
Medtr7g076630 Medicago truncatula HOM05D005277 ORTHO05D006319 1.3e-39 166.0 90 80.0
A03p65670 Brassica napus HOM05D005277 ORTHO05D006319 1.8e-39 165.6 86 84.9
BraA03t15618Z Brassica rapa HOM05D005277 ORTHO05D006319 1.8e-39 165.6 86 84.9
CDE06G0676 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 1.8e-39 165.6 81 84.0
Lalb_Chr01g0021101 Lupinus albus HOM05D005277 ORTHO05D006319 3.0e-39 164.9 91 79.1
MD01G1052300 Malus domestica HOM05D005277 ORTHO05D006319 3.9e-39 164.5 84 82.1
Psat3g111720 Pisum sativum HOM05D005277 ORTHO05D006319 3.9e-39 164.5 89 80.9
CiPaw.02G027600 Carya illinoinensis HOM05D005277 ORTHO05D006319 5.1e-39 164.1 84 86.9
Duzib138G0488 Durio zibethinus HOM05D005277 ORTHO05D006319 5.1e-39 164.1 86 83.7
Thecc.01G365200 Theobroma cacao HOM05D005277 ORTHO05D006319 6.7e-39 163.7 84 84.5
FAN03G2608 Fragaria x ananassa HOM05D005277 ORTHO05D006319 8.7e-39 163.3 84 84.5
Hma1.2p1_2482F.1_g323010 Hydrangea macrophylla HOM05D005277 ORTHO05D006319 8.7e-39 163.3 89 79.8
CSS0040378 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 1.1e-38 162.9 87 79.3
AL6G52850 Arabidopsis lyrata HOM05D005277 ORTHO05D006319 1.5e-38 162.5 90 81.1
AT4G00585 Arabidopsis thaliana HOM05D005277 ORTHO05D006319 1.9e-38 162.2 90 82.2
Carub.0006s3664 Capsella rubella HOM05D005277 ORTHO05D006319 2.5e-38 161.8 86 81.4
CiPaw.01G056300 Carya illinoinensis HOM05D005277 ORTHO05D006319 2.5e-38 161.8 84 85.7
TWI59G0525 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 2.5e-38 161.8 87 81.6
Actinidia32868 Actinidia chinensis HOM05D005277 ORTHO05D006319 3.3e-38 161.4 89 83.1
Actinidia34103 Actinidia chinensis HOM05D005277 ORTHO05D006319 3.3e-38 161.4 89 83.1
Phvul.008G068800 Phaseolus vulgaris HOM05D005277 ORTHO05D006319 3.3e-38 161.4 85 81.2
HPP92_016701 Vanilla planifolia HOM05D005277 ORTHO05D006319 4.3e-38 161.0 88 80.7
Os09g0560300 Oryza sativa ssp. japonica HOM05D005277 ORTHO05D006319 5.6e-38 160.6 84 83.3
Sc23g0003110 Simmondsia chinensis HOM05D005277 ORTHO05D006319 5.6e-38 160.6 86 82.6
TWI23G0263 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 7.4e-38 160.2 90 80.0
GSVIVG01026823001 Vitis vinifera HOM05D005277 ORTHO05D006319 7.4e-38 160.2 82 81.7
CDE05G2617 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 1.3e-37 159.5 86 80.2
Gohir.A07G143600 Gossypium hirsutum HOM05D005277 ORTHO05D006319 1.3e-37 159.5 84 83.3
Gorai.004G156900 Gossypium raimondii HOM05D005277 ORTHO05D006319 1.3e-37 159.5 86 82.6
C07p62700 Brassica napus HOM05D005277 ORTHO05D006319 1.6e-37 159.1 87 81.6
BolC7t46684H Brassica oleracea HOM05D005277 ORTHO05D006319 1.6e-37 159.1 87 81.6
Gohir.A08G129800 Gossypium hirsutum HOM05D005277 ORTHO05D006319 1.6e-37 159.1 86 82.6
MELO3C023322.2 Cucumis melo HOM05D005277 ORTHO05D006319 2.1e-37 158.7 86 79.1
Prupe.2G159900 Prunus persica HOM05D005277 ORTHO05D006319 2.8e-37 158.3 84 81.0
CsaV3_2G015020 Cucumis sativus L. HOM05D005277 ORTHO05D006319 3.7e-37 157.9 86 79.1
Hund16947 Selenicereus undatus HOM05D005277 ORTHO05D006319 3.7e-37 157.9 86 80.2
Ciclev10023111m.g Citrus clementina HOM05D005277 ORTHO05D006319 6.2e-37 157.1 84 81.0
Zm00001eb104680 Zea mays HOM05D005277 ORTHO05D006319 6.2e-37 157.1 86 83.7
THA.LOC104801449 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 8.1e-37 156.8 90 80.0
Gohir.D07G149400 Gossypium hirsutum HOM05D005277 ORTHO05D006319 1.1e-36 156.4 87 81.6
Gorai.001G170800 Gossypium raimondii HOM05D005277 ORTHO05D006319 1.1e-36 156.4 87 81.6
Nitab4.5_0000080g0040 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.1e-36 156.4 86 80.2
BcaNung07162 Brassica carinata HOM05D005277 ORTHO05D006319 1.4e-36 156.0 88 80.7
Oeu021782.1 Olea europaea HOM05D005277 ORTHO05D006319 1.4e-36 156.0 88 77.3
Peaxi162Scf01969g00020 Petunia axillaris HOM05D005277 ORTHO05D006319 1.4e-36 156.0 86 79.1
vmacro06693 Vaccinium macrocarpon HOM05D005277 ORTHO05D006319 4.0e-36 154.5 86 77.9
Glyma.09G263000 Glycine max HOM05D005277 ORTHO05D006319 5.3e-36 154.1 86 77.9
Aqoxy7G00369 Aquilegia oxysepala HOM05D005277 ORTHO05D006319 6.9e-36 153.7 87 77.0
BcaC04g24159 Brassica carinata HOM05D005277 ORTHO05D006319 6.9e-36 153.7 88 79.5
Ca_07884_v3 Cicer arietinum L. HOM05D005277 ORTHO05D006319 6.9e-36 153.7 85 78.8
BolC3t16185H Brassica oleracea HOM05D005277 ORTHO05D006319 9.0e-36 153.3 90 78.9
Sed0006100 Sechium edule HOM05D005277 ORTHO05D006319 9.0e-36 153.3 84 76.2
THA.LOC104817018 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 9.0e-36 153.3 90 81.1
ClCG11G004150 Citrullus lanatus HOM05D005277 ORTHO05D006319 1.5e-35 152.5 86 75.6
EL10Ac1g00522 Beta vulgaris HOM05D005277 ORTHO05D006319 2.0e-35 152.1 87 75.9
BcaC01g06868 Brassica carinata HOM05D005277 ORTHO05D006319 2.0e-35 152.1 81 81.5
A09p00410 Brassica napus HOM05D005277 ORTHO05D006319 2.0e-35 152.1 90 77.8
Glyma.18G229200 Glycine max HOM05D005277 ORTHO05D006319 3.4e-35 151.4 86 76.7
Gohir.D08G151200 Gossypium hirsutum HOM05D005277 ORTHO05D006319 3.4e-35 151.4 88 78.4
Nitab4.5_0000716g0150 Nicotiana tabacum HOM05D005277 ORTHO05D006319 3.4e-35 151.4 86 77.9
Nitab4.5_0003365g0020 Nicotiana tabacum HOM05D005277 ORTHO05D006319 3.4e-35 151.4 86 77.9
PSO782G2674 Papaver somniferum HOM05D005277 ORTHO05D006319 3.4e-35 151.4 87 73.6
Lsat_1_v5_gn_8_8281 Lactuca sativa HOM05D005277 ORTHO05D006319 4.5e-35 151.0 90 75.6
BcaB01g02260 Brassica carinata HOM05D005277 ORTHO05D006319 5.8e-35 150.6 86 77.9
CANSAT56G2015 Cannabis sativa HOM05D005277 ORTHO05D006319 5.8e-35 150.6 87 74.7
BcaNung05357 Brassica carinata HOM05D005277 ORTHO05D006319 7.6e-35 150.2 81 81.5
HanXRQChr08g0209231 Helianthus annuus HOM05D005277 ORTHO05D006319 9.9e-35 149.8 86 76.7
PGR042G3267 Punica granatum HOM05D005277 ORTHO05D006319 9.9e-35 149.8 86 77.9
A03p32120 Brassica napus HOM05D005277 ORTHO05D006319 1.3e-34 149.4 90 76.7
BraA03t12382Z Brassica rapa HOM05D005277 ORTHO05D006319 1.3e-34 149.4 90 76.7
ECA233G3829 Erigeron canadensis HOM05D005277 ORTHO05D006319 1.3e-34 149.4 86 74.4
Peaxi162Scf00915g00031 Petunia axillaris HOM05D005277 ORTHO05D006319 1.3e-34 149.4 86 76.7
Sed0005058 Sechium edule HOM05D005277 ORTHO05D006319 1.3e-34 149.4 86 75.6
Solyc03g025910.3 Solanum lycopersicum HOM05D005277 ORTHO05D006319 2.2e-34 148.7 86 75.6
Sopen03g004720 Solanum pennellii HOM05D005277 ORTHO05D006319 2.2e-34 148.7 86 75.6
PGSC0003DMG400014288 Solanum tuberosum HOM05D005277 ORTHO05D006319 2.2e-34 148.7 86 75.6
C03p39140 Brassica napus HOM05D005277 ORTHO05D006319 3.8e-34 147.9 85 77.6
Migut.F00352 Erythranthe guttata HOM05D005277 ORTHO05D006319 3.8e-34 147.9 86 77.9
HanXRQChr02g0054711 Helianthus annuus HOM05D005277 ORTHO05D006319 6.4e-34 147.1 86 74.4
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 5.5e-33 144.1 85 76.5
AUR62004311 Chenopodium quinoa HOM05D005277 ORTHO05D006319 1.0e-31 139.8 86 73.3
AUR62022763 Chenopodium quinoa HOM05D005277 ORTHO05D006319 1.3e-31 139.4 86 73.3
Cc00_g02540 Coffea canephora HOM05D005277 ORTHO05D006319 5.1e-31 137.5 78 75.6
SalBow2G0266 Salvia bowleyana HOM05D005277 ORTHO05D006319 3.3e-30 134.8 95 64.2
GSVIVG01010541001 Vitis vinifera HOM05D005277 ORTHO05D006319 3.3e-30 134.8 62 88.7
Rhsim03G0179700 Rhododendron simsii HOM05D005277 ORTHO05D006319 1.8e-28 129.0 156 45.5
DCAR_018191 Daucus carota HOM05D005277 ORTHO05D006319 5.3e-28 127.5 75 69.3
Cc02_g03110 Coffea canephora HOM05D005277 ORTHO05D006319 7.6e-27 123.6 62 80.6
Sp7g35520 Schrenkiella parvula HOM05D002845 ORTHO05D006319 9.3e-25 116.7 58 84.5
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 2.7e-24 115.2 62 80.6
RcHm_v2.0_Chr1g0353351 Rosa chinensis HOM05D005277 ORTHO05D006319 6.0e-24 114.0 61 80.3
Hund27308 Selenicereus undatus HOM05D005277 ORTHO05D006319 1.3e-23 112.8 62 80.6
Pp3c7_13700 Physcomitrium patens HOM05D005277 ORTHO05D006319 1.8e-23 112.5 82 61.0
Sabra14G0058000 Salix brachista HOM05D005277 ORTHO05D006319 5.1e-23 110.9 62 82.3
Haze_15461 Corylus avellana HOM05D005277 ORTHO05D006319 8.7e-23 110.2 62 83.9
QL08p049830 Quercus lobata HOM05D005277 ORTHO05D006319 8.7e-23 110.2 62 83.9
Zm00001eb320330 Zea mays HOM05D005277 ORTHO05D006319 3.3e-22 108.2 62 82.3
unitig_0.g2484 Utricularia gibba HOM05D002154 ORTHO05D002362 5.7e-22 107.5 62 77.4
Mapoly0023s0078 Marchantia polymorpha HOM05D005277 ORTHO05D006319 7.4e-22 107.1 84 61.9
Cpa.g.c32742 Carica papaya HOM05D005277 ORTHO05D006319 1.3e-21 106.3 60 80.0
MBI06_g06483_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 1.6e-21 105.9 62 77.4
RcHm_v2.0_Chr0c39g0503241 Rosa chinensis HOM05D005277 ORTHO05D006319 1.6e-21 105.9 62 79.0
RcHm_v2.0_Chr1g0353201 Rosa chinensis HOM05D005277 ORTHO05D006319 1.6e-21 105.9 62 79.0
Atru.chr5.442 Acer truncatum HOM05D005277 ORTHO05D006319 2.8e-21 105.1 61 78.7
HPP92_028083 Vanilla planifolia HOM05D005277 ORTHO05D006319 3.7e-21 104.8 66 74.2
Ah.05g176400 Amaranthus hybridus HOM05D005277 ORTHO05D006319 6.3e-21 104.0 60 76.7
Nitab4.5_0008315g0010 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.4e-20 102.8 63 74.6
CSS0022794 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 2.4e-20 102.1 62 74.2
SMO203G0011 Selaginella moellendorffii HOM05D005277 ORTHO05D006319 3.1e-20 101.7 61 63.9
C09p00490 Brassica napus HOM05D005277 ORTHO05D006319 4.1e-20 101.3 60 76.7
BolC9t52983H Brassica oleracea HOM05D005277 ORTHO05D006319 4.1e-20 101.3 51 82.4
SHI13469 Sapria himalayana HOM05D005277 ORTHO05D006319 4.1e-20 101.3 60 76.7
BraA09t35720Z Brassica rapa HOM05D005277 ORTHO05D006319 1.2e-19 99.8 62 74.2
BcaNung05359 Brassica carinata HOM05D005277 ORTHO05D006319 4.5e-19 97.8 62 72.6
ATR0721G079 Amborella trichopoda HOM05D005277 ORTHO05D006319 5.9e-19 97.4 65 73.8
ATR0763G077 Amborella trichopoda HOM05D005277 ORTHO05D006319 1.7e-18 95.9 64 71.9
ATR0174G019 Amborella trichopoda HOM05D005277 ORTHO05D006319 3.2e-17 91.7 64 71.9
CSS0038928 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 2.1e-16 89.0 63 63.5
AagrBONN_evm.TU.Sc2ySwM_369.4 Anthoceros agrestis HOM05D005277 ORTHO05D006319 3.9e-15 84.7 79 53.2
FAN10G1490 Fragaria x ananassa HOM05D005277 ORTHO05D006319 1.1e-14 83.2 39 84.6
PRCOL_00003506 Prasinoderma coloniale HOM05D005277 ORTHO05D006319 2.5e-14 82.0 66 56.1
MCO13G435 Micromonas commoda HOM05D005277 ORTHO05D006319 3.1e-12 75.1 71 53.5


User provided reference genes

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