Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.I7TC1S Arachis hypogaea HOM05D005352 ORTHO05D006371 9.3e-56 219.9 108 100.0
arahy.Tifrunner.gnm1.ann1.UV8WYD Arachis hypogaea HOM05D005352 ORTHO05D006371 6.3e-36 154.1 79 94.9
Glyma.12G154400 Glycine max HOM05D005352 ORTHO05D006371 1.3e-28 129.8 81 76.5
Glyma.06G242800 Glycine max HOM05D005352 ORTHO05D006371 3.7e-28 128.3 81 75.3
Phvul.004G175600 Phaseolus vulgaris HOM05D005352 ORTHO05D006371 6.3e-28 127.5 81 74.1
Lj3g0008482 Lotus japonicus HOM05D005352 ORTHO05D006371 1.4e-27 126.3 81 72.8
Manes.03G110400 Manihot esculenta HOM05D005352 ORTHO05D006371 1.4e-27 126.3 81 72.8
Ca_24271_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 5.3e-27 124.4 81 72.8
Lalb_Chr01g0006571 Lupinus albus HOM05D005352 ORTHO05D006371 6.9e-27 124.0 81 74.1
Ciclev10010072m.g Citrus clementina HOM05D005352 ORTHO05D006371 2.0e-26 122.5 81 70.4
Manes.15G086800 Manihot esculenta HOM05D005352 ORTHO05D006371 4.5e-26 121.3 81 69.1
Hma1.2p1_0885F.1_g232590 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 1.3e-25 119.8 81 65.4
Actinidia35250 Actinidia chinensis HOM05D005352 ORTHO05D006371 2.9e-25 118.6 81 65.4
Cpa.g.sc80.62 Carica papaya HOM05D005352 ORTHO05D006371 2.9e-25 118.6 84 65.5
Lj5g0028047 Lotus japonicus HOM05D005352 ORTHO05D006371 5.0e-25 117.9 81 72.8
Dinv04306 Davidia involucrata HOM05D005352 ORTHO05D006371 1.9e-24 115.9 82 65.9
Hma1.2p1_0898F.1_g234370 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 1.9e-24 115.9 73 72.6
Lalb_Chr25g0286381 Lupinus albus HOM05D005352 ORTHO05D006371 4.2e-24 114.8 81 67.9
Cfa020587 Carpinus fangiana HOM05D005352 ORTHO05D006371 2.7e-23 112.1 81 66.7
CSS0040687 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 7.9e-23 110.5 81 63.0
Duzib268G0922 Durio zibethinus HOM05D005352 ORTHO05D006371 7.9e-23 110.5 81 65.4
TAR629G0728 Trochodendron aralioides HOM05D005352 ORTHO05D006371 7.9e-23 110.5 79 64.6
Eucgr.F03316 Eucalyptus grandis HOM05D005352 ORTHO05D006371 1.4e-22 109.8 81 64.2
HanXRQChr12g0364261 Helianthus annuus HOM05D005352 ORTHO05D006371 1.8e-22 109.4 96 55.2
Thecc.07G089400 Theobroma cacao HOM05D005352 ORTHO05D006371 2.3e-22 109.0 81 66.7
TAR629G2863 Trochodendron aralioides HOM05D000001 ORTHO05D000424 2.3e-22 109.0 79 63.3
Dinv20171 Davidia involucrata HOM05D005352 ORTHO05D006371 3.9e-22 108.2 81 65.4
RcHm_v2.0_Chr5g0033731 Rosa chinensis HOM05D005352 ORTHO05D006371 3.9e-22 108.2 81 60.5
TWI39G1034 Tripterygium wilfordii HOM05D005352 ORTHO05D006371 3.9e-22 108.2 81 64.2
Haze_09426 Corylus avellana HOM05D002732 ORTHO05D002955 5.1e-22 107.8 80 63.8
FvH4_3g19981 Fragaria vesca HOM05D005352 ORTHO05D006371 5.1e-22 107.8 81 59.3
HanXRQChr13g0406971 Helianthus annuus HOM05D005352 ORTHO05D006371 6.7e-22 107.5 81 65.4
Peaxi162Scf00069g01430 Petunia axillaris HOM05D005352 ORTHO05D006371 8.8e-22 107.1 82 59.8
PGR031G2765 Punica granatum HOM05D005352 ORTHO05D006371 8.8e-22 107.1 83 63.9
FAN25G2626 Fragaria x ananassa HOM05D005352 ORTHO05D006371 1.1e-21 106.7 81 59.3
Gohir.D11G297800 Gossypium hirsutum HOM05D005352 ORTHO05D006371 1.1e-21 106.7 81 64.2
Gorai.007G322700 Gossypium raimondii HOM05D005352 ORTHO05D006371 1.1e-21 106.7 81 64.2
Lsat_1_v5_gn_6_15501 Lactuca sativa HOM05D005352 ORTHO05D006371 1.1e-21 106.7 80 65.0
FAN11G1098 Fragaria x ananassa HOM05D005352 ORTHO05D006371 1.5e-21 106.3 81 58.0
MD11G1246900 Malus domestica HOM05D005352 ORTHO05D006371 1.5e-21 106.3 81 59.3
Sabra16G0262400 Salix brachista HOM05D005352 ORTHO05D006371 1.5e-21 106.3 98 56.1
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 2.0e-21 105.9 61 78.7
MD03G1227400 Malus domestica HOM05D005352 ORTHO05D006371 2.0e-21 105.9 81 59.3
Nn7g36574 Nelumbo nucifera HOM05D005352 ORTHO05D006371 2.0e-21 105.9 70 70.0
DCAR_013105 Daucus carota HOM05D005352 ORTHO05D006371 2.6e-21 105.5 81 58.0
vmacro09532 Vaccinium macrocarpon HOM05D005352 ORTHO05D006371 2.6e-21 105.5 81 60.5
CsaV3_3G006320 Cucumis sativus L. HOM05D005352 ORTHO05D006371 3.3e-21 105.1 102 51.0
Oeu011684.1 Olea europaea HOM05D005352 ORTHO05D006371 3.3e-21 105.1 63 71.4
Os02g0794600 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 3.3e-21 105.1 59 78.0
Potri.001G400000 Populus trichocarpa HOM05D005352 ORTHO05D006371 3.3e-21 105.1 91 59.3
Prupe.4G181400 Prunus persica HOM05D005352 ORTHO05D006371 3.3e-21 105.1 82 61.0
MELO3C016512.2 Cucumis melo HOM05D005352 ORTHO05D006371 4.4e-21 104.8 81 58.0
Lsat_1_v5_gn_9_96160 Lactuca sativa HOM05D005352 ORTHO05D006371 4.4e-21 104.8 81 66.7
Potri.011G119000 Populus trichocarpa HOM05D005352 ORTHO05D006371 4.4e-21 104.8 81 61.7
Ah.06g184190 Amaranthus hybridus HOM05D005352 ORTHO05D006371 5.7e-21 104.4 64 71.9
Nitab4.5_0002383g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 5.7e-21 104.4 82 62.2
Ah.04g164870 Amaranthus hybridus HOM05D005352 ORTHO05D006371 7.4e-21 104.0 62 72.6
MD03G1227600 Malus domestica HOM05D005352 ORTHO05D006371 7.4e-21 104.0 81 58.0
Sabra11G0103700 Salix brachista HOM05D002732 ORTHO05D002955 7.4e-21 104.0 82 63.4
ECA240G0949 Erigeron canadensis HOM05D005352 ORTHO05D006371 9.7e-21 103.6 82 61.0
FAN16G1707 Fragaria x ananassa HOM05D005352 ORTHO05D006371 9.7e-21 103.6 81 58.0
Solyc10g007010.1 Solanum lycopersicum HOM05D005352 ORTHO05D006371 9.7e-21 103.6 81 59.3
Sopen10g002920 Solanum pennellii HOM05D005352 ORTHO05D006371 9.7e-21 103.6 81 59.3
unitig_26.g9534 Utricularia gibba HOM05D005352 ORTHO05D006371 9.7e-21 103.6 75 62.7
HPP92_010342 Vanilla planifolia HOM05D005352 ORTHO05D006371 9.7e-21 103.6 66 69.7
A01p38690 Brassica napus HOM05D005352 ORTHO05D006371 1.3e-20 103.2 54 83.3
CARHR090370 Cardamine hirsuta HOM05D005352 ORTHO05D006371 1.7e-20 102.8 56 80.4
Gohir.D05G355700 Gossypium hirsutum HOM05D005352 ORTHO05D006371 1.7e-20 102.8 73 65.8
Carub.0001s4218 Capsella rubella HOM05D005352 ORTHO05D006371 2.2e-20 102.4 81 64.2
SGA_v2.0_scaffold34G13815 Striga asiatica HOM05D005352 ORTHO05D006371 2.2e-20 102.4 81 59.3
BcaC09g48499 Brassica carinata HOM05D005352 ORTHO05D006371 2.8e-20 102.1 54 83.3
ClCG10G006950 Citrullus lanatus HOM05D005352 ORTHO05D006371 2.8e-20 102.1 82 58.5
Gorai.009G388100 Gossypium raimondii HOM05D005352 ORTHO05D006371 2.8e-20 102.1 73 65.8
Nitab4.5_0000207g0090 Nicotiana tabacum HOM05D005352 ORTHO05D006371 2.8e-20 102.1 81 58.0
QL08p021806 Quercus lobata HOM05D005352 ORTHO05D006371 2.8e-20 102.1 80 61.2
Sc03g0009970 Simmondsia chinensis HOM05D005352 ORTHO05D006371 2.8e-20 102.1 69 68.1
PGSC0003DMG400025038 Solanum tuberosum HOM05D005352 ORTHO05D006371 2.8e-20 102.1 81 58.0
AL3G27810 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 3.7e-20 101.7 55 80.0
AT1G53030 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 3.7e-20 101.7 81 64.2
BolC1t04875H Brassica oleracea HOM05D002732 ORTHO05D002955 3.7e-20 101.7 97 54.6
Cc05_g12050 Coffea canephora HOM05D005352 ORTHO05D006371 3.7e-20 101.7 82 61.0
Gohir.A11G284900 Gossypium hirsutum HOM05D005352 ORTHO05D006371 3.7e-20 101.7 81 63.0
Sed0025683 Sechium edule HOM05D005352 ORTHO05D006371 3.7e-20 101.7 74 60.8
Solyc07g063160.2 Solanum lycopersicum HOM05D005352 ORTHO05D006371 3.7e-20 101.7 79 58.2
THA.LOC104818076 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 3.7e-20 101.7 72 69.4
Gohir.A04G030400 Gossypium hirsutum HOM05D005352 ORTHO05D006371 4.8e-20 101.3 73 65.8
Rhsim01G0293100 Rhododendron simsii HOM05D005352 ORTHO05D006371 4.8e-20 101.3 81 58.0
Rhsim06G0198800 Rhododendron simsii HOM05D005352 ORTHO05D006371 4.8e-20 101.3 81 60.5
GSVIVG01014339001 Vitis vinifera HOM05D005352 ORTHO05D006371 4.8e-20 101.3 104 51.0
DCAR_017140 Daucus carota HOM05D005352 ORTHO05D006371 6.3e-20 100.9 81 59.3
FAN21G3346 Fragaria x ananassa HOM05D000257 ORTHO05D009129 6.3e-20 100.9 61 70.5
Nitab4.5_0001336g0010 Nicotiana tabacum HOM05D005352 ORTHO05D006371 6.3e-20 100.9 81 56.8
AT3G15352 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 8.2e-20 100.5 55 80.0
C01p49110 Brassica napus HOM05D002732 ORTHO05D002955 8.2e-20 100.5 104 51.9
Migut.M00807 Erythranthe guttata HOM05D005352 ORTHO05D006371 8.2e-20 100.5 81 61.7
Thhalv10011917m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 8.2e-20 100.5 81 65.4
AUR62034294 Chenopodium quinoa HOM05D002732 ORTHO05D002955 1.1e-19 100.1 96 54.2
PSO384G2174 Papaver somniferum HOM05D005352 ORTHO05D006371 1.1e-19 100.1 70 67.1
Sopen07g031350 Solanum pennellii HOM05D005352 ORTHO05D006371 1.1e-19 100.1 79 58.2
BcaC08g43490 Brassica carinata HOM05D002732 ORTHO05D002955 1.4e-19 99.8 81 66.7
C06p08730 Brassica napus HOM05D005352 ORTHO05D006371 1.4e-19 99.8 81 66.7
BolC6t35949H Brassica oleracea HOM05D005352 ORTHO05D006371 1.4e-19 99.8 81 66.7
CiPaw.11G169400 Carya illinoinensis HOM05D005352 ORTHO05D006371 1.4e-19 99.8 81 59.3
Dinv03511 Davidia involucrata HOM05D005352 ORTHO05D006371 1.4e-19 99.8 81 58.0
Thhalv10021884m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 1.4e-19 99.8 57 73.7
Pp3c15_5560 Physcomitrium patens HOM05D005352 ORTHO05D006371 1.4e-19 99.8 55 80.0
AL1G61380 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 1.8e-19 99.4 81 66.7
EL10Ac4g08174 Beta vulgaris HOM05D005352 ORTHO05D006371 1.8e-19 99.4 62 67.7
A06p01290 Brassica napus HOM05D005352 ORTHO05D006371 1.8e-19 99.4 81 66.7
BraA06t23355Z Brassica rapa HOM05D005352 ORTHO05D006371 1.8e-19 99.4 81 66.7
Carub.0003s1504 Capsella rubella HOM05D005352 ORTHO05D006371 2.4e-19 99.0 54 77.8
AUR62019420 Chenopodium quinoa HOM05D005352 ORTHO05D006371 2.4e-19 99.0 73 63.0
CARHR043250 Cardamine hirsuta HOM05D005352 ORTHO05D006371 3.1e-19 98.6 81 63.0
Nitab4.5_0001796g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 3.1e-19 98.6 62 67.7
Os09g0420700 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 3.1e-19 98.6 54 77.8
PGSC0003DMG400012418 Solanum tuberosum HOM05D005352 ORTHO05D006371 3.1e-19 98.6 79 57.0
CAN.G199.4 Capsicum annuum HOM05D005352 ORTHO05D006371 4.1e-19 98.2 81 55.6
Ca_01841_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 4.1e-19 98.2 61 75.4
Sp3g13580 Schrenkiella parvula HOM05D005352 ORTHO05D006371 4.1e-19 98.2 50 84.0
Peaxi162Scf00027g00225 Petunia axillaris HOM05D005352 ORTHO05D006371 6.9e-19 97.4 81 55.6
Aa31LG10G2070 Aethionema arabicum HOM05D005352 ORTHO05D006371 1.2e-18 96.7 74 63.5
CSS0006050 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 1.2e-18 96.7 75 57.3
CSS0042186 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 1.2e-18 96.7 75 57.3
COL.COLO4_27168 Corchorus olitorius HOM05D005352 ORTHO05D006371 1.2e-18 96.7 73 65.8
MBI03_g28426_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 1.5e-18 96.3 76 64.5
CAN.G162.62 Capsicum annuum HOM05D005352 ORTHO05D006371 2.6e-18 95.5 61 68.9
THA.LOC104810475 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 2.6e-18 95.5 81 56.8
Medtr0271s0050 Medicago truncatula HOM05D005352 ORTHO05D006371 4.5e-18 94.7 74 62.2
Medtr0648s0010 Medicago truncatula HOM05D005352 ORTHO05D006371 4.5e-18 94.7 74 62.2
ATR0568G005 Amborella trichopoda HOM05D005352 ORTHO05D006371 1.0e-17 93.6 49 79.6
Medtr1g092430 Medicago truncatula HOM05D005352 ORTHO05D006371 1.3e-17 93.2 55 74.5
Nn2g14920 Nelumbo nucifera HOM05D005352 ORTHO05D006371 1.3e-17 93.2 74 66.2
vmacro11864 Vaccinium macrocarpon HOM05D002732 ORTHO05D002955 1.3e-17 93.2 75 62.7
MBI06_g21936_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 2.9e-17 92.0 105 45.7
Psat5g244480 Pisum sativum HOM05D005352 ORTHO05D006371 2.9e-17 92.0 55 74.5
Psat5g287360 Pisum sativum HOM05D005352 ORTHO05D006371 2.9e-17 92.0 55 74.5
arahy.Tifrunner.gnm1.ann1.XK3P9A Arachis hypogaea HOM05D005352 ORTHO05D006371 3.8e-17 91.7 47 78.7
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 6.5e-17 90.9 83 56.6
TPR.G39025 Trifolium pratense HOM05D005352 ORTHO05D006371 6.5e-17 90.9 52 73.1
arahy.Tifrunner.gnm1.ann1.BBI5VM Arachis hypogaea HOM05D005352 ORTHO05D006371 1.1e-16 90.1 82 52.4
Migut.H01937 Erythranthe guttata HOM05D005352 ORTHO05D006371 1.4e-16 89.7 56 73.2
ATR0736G058 Amborella trichopoda HOM05D005352 ORTHO05D006371 2.5e-16 89.0 48 77.1
CiPaw.12G118100 Carya illinoinensis HOM05D005352 ORTHO05D006371 4.2e-16 88.2 70 61.4
Mapoly0075s0017 Marchantia polymorpha HOM05D005352 ORTHO05D006371 9.4e-16 87.0 46 78.3
Aqoxy7G00104 Aquilegia oxysepala HOM05D005352 ORTHO05D006371 2.1e-15 85.9 82 53.7
SEGI_39587 Sequoiadendron giganteum HOM05D005352 ORTHO05D006371 6.1e-15 84.3 82 50.0
AagrBONN_evm.TU.Sc2ySwM_228.196 Anthoceros agrestis HOM05D005352 ORTHO05D006371 1.4e-14 83.2 72 52.8
SMO358G0354 Selaginella moellendorffii HOM05D005352 ORTHO05D006371 6.7e-14 80.9 42 76.2
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 2.6e-13 79.0 71 59.2
Zm00001eb312990 Zea mays HOM05D005352 ORTHO05D006371 5.7e-13 77.8 72 52.8
MCO06G059 Micromonas commoda HOM05D005352 ORTHO05D006371 3.1e-11 72.0 56 62.5
Cre05.g232850 Chlamydomonas reinhardtii HOM05D005352 ORTHO05D006371 3.5e-10 68.6 52 67.3
BcaB07g33364 Brassica carinata HOM05D005352 ORTHO05D006371 1.0e-09 67.0 62 58.1
CDE08G1336 Ceratophyllum demersum HOM05D005352 ORTHO05D006371 4.0e-06 55.1 55 56.4


User provided reference genes

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