Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.I6QGYY Arachis hypogaea HOM05D006585 ORTHO05D007798 2.7e-169 598.6 300 100.0
arahy.Tifrunner.gnm1.ann1.QD46ZG Arachis hypogaea HOM05D006585 ORTHO05D007798 2.4e-162 575.5 300 97.0
Lj4g0008721 Lotus japonicus HOM05D006585 ORTHO05D007798 7.1e-114 414.5 305 71.5
Glyma.18G143200 Glycine max HOM05D006585 ORTHO05D007798 7.9e-113 411.0 299 70.9
Phvul.003G063800 Phaseolus vulgaris HOM05D006585 ORTHO05D007798 5.9e-108 394.8 301 67.4
Psat1g023160 Pisum sativum HOM05D006585 ORTHO05D007798 2.2e-107 392.9 300 67.0
Medtr2g079800 Medicago truncatula HOM05D006585 ORTHO05D007798 7.4e-103 377.9 303 64.7
Medtr8g069560 Medicago truncatula HOM05D006585 ORTHO05D007798 8.5e-99 364.4 326 60.1
Ca_22577_v3 Cicer arietinum L. HOM05D006585 ORTHO05D007798 6.1e-97 358.2 282 67.0
VMungo0251G2192 Vigna mungo HOM05D006585 ORTHO05D007798 2.6e-92 342.8 280 65.0
QL03p058556 Quercus lobata HOM05D006585 ORTHO05D007798 8.5e-83 311.2 288 59.4
Cfa009198 Carpinus fangiana HOM05D006585 ORTHO05D007798 1.5e-79 300.4 304 54.9
Duzib248G0505 Durio zibethinus HOM05D006585 ORTHO05D007798 1.3e-75 287.3 304 53.6
CiPaw.05G183700 Carya illinoinensis HOM05D006585 ORTHO05D007798 1.4e-72 277.3 300 53.0
Thecc.02G257200 Theobroma cacao HOM05D006585 ORTHO05D007798 1.8e-72 276.9 313 50.5
ClCG08G017740 Citrullus lanatus HOM05D006585 ORTHO05D007798 8.8e-72 274.6 317 49.8
RcHm_v2.0_Chr4g0433351 Rosa chinensis HOM05D006585 ORTHO05D007798 2.0e-71 273.5 327 46.2
Sed0016045 Sechium edule HOM05D006585 ORTHO05D007798 2.2e-70 270.0 303 50.5
Lalb_Chr16g0392221 Lupinus albus HOM05D006585 ORTHO05D007798 1.4e-69 267.3 207 66.7
Potri.010G044800 Populus trichocarpa HOM05D006585 ORTHO05D007798 4.5e-68 262.3 282 52.8
TWI36G0027 Tripterygium wilfordii HOM05D006585 ORTHO05D007798 4.5e-68 262.3 288 53.1
FvH4_4g25900 Fragaria vesca HOM05D006585 ORTHO05D007798 1.3e-67 260.8 325 45.5
CANSAT01G1755 Cannabis sativa HOM05D006585 ORTHO05D007798 6.5e-67 258.5 328 45.4
Dinv24805 Davidia involucrata HOM05D006585 ORTHO05D007798 1.9e-66 256.9 303 50.8
MD13G1097800 Malus domestica HOM05D006585 ORTHO05D007798 2.1e-65 253.4 353 45.6
TAR371G0523 Trochodendron aralioides HOM05D006585 ORTHO05D007798 2.7e-65 253.1 299 48.5
COL.COLO4_24245 Corchorus olitorius HOM05D006585 ORTHO05D002520 1.0e-64 251.1 286 50.3
Gorai.005G179800 Gossypium raimondii HOM05D006585 ORTHO05D007798 1.8e-64 250.4 304 46.4
Prupe.1G247600 Prunus persica HOM05D006585 ORTHO05D007798 5.2e-64 248.8 282 49.6
Prupe.1G247500 Prunus persica HOM05D006585 ORTHO05D007798 4.4e-63 245.7 346 43.4
FAN17G2552 Fragaria x ananassa HOM05D006585 ORTHO05D007798 2.8e-62 243.0 337 43.3
TWI75G0333 Tripterygium wilfordii HOM05D006585 ORTHO05D007798 4.9e-62 242.3 286 49.7
Gohir.A03G136500 Gossypium hirsutum HOM05D006585 ORTHO05D007798 8.3e-62 241.5 283 47.7
Sabra10G0023300 Salix brachista HOM05D000740 ORTHO05D003236 7.0e-61 238.4 322 46.3
Cpa.g.sc33.3 Carica papaya HOM05D006585 ORTHO05D007798 1.9e-58 230.3 291 46.0
FAN12G1097 Fragaria x ananassa HOM05D006585 ORTHO05D007798 5.6e-58 228.8 318 43.1
FAN12G1379 Fragaria x ananassa HOM05D006585 ORTHO05D007798 5.6e-58 228.8 318 43.1
THA.LOC104823651 Tarenaya hassleriana HOM05D006585 ORTHO05D007798 1.4e-56 224.2 288 48.6
Ciclev10033875m.g Citrus clementina HOM05D006585 ORTHO05D007798 2.3e-56 223.4 306 47.7
Manes.13G025900 Manihot esculenta HOM05D006585 ORTHO05D007798 6.8e-56 221.9 285 47.7
Aqoxy5G03808 Aquilegia oxysepala HOM05D006585 ORTHO05D007798 8.9e-56 221.5 303 45.5
MD13G1097900 Malus domestica HOM05D006585 ORTHO05D007798 2.0e-55 220.3 319 42.9
Oeu049180.1 Olea europaea HOM05D006585 ORTHO05D007798 9.8e-55 218.0 311 41.8
GSVIVG01004087001 Vitis vinifera HOM05D006585 ORTHO05D007798 9.8e-55 218.0 301 46.8
Sopen05g008150 Solanum pennellii HOM05D006585 ORTHO05D007798 4.1e-53 212.6 303 44.2
Lj6C811T17 Lonicera japonica HOM05D006585 ORTHO05D007798 5.4e-53 212.2 312 43.9
DCAR_031138 Daucus carota HOM05D006585 ORTHO05D007798 9.2e-53 211.5 295 43.4
TPR.G34666 Trifolium pratense HOM05D006585 ORTHO05D007798 3.5e-52 209.5 167 64.7
Actinidia27800 Actinidia chinensis HOM05D006585 ORTHO05D007798 5.9e-52 208.8 339 41.3
MBI10_g00733_MAGBIO Magnolia biondii HOM05D006585 ORTHO05D007798 1.9e-50 203.8 310 42.3
Nitab4.5_0002255g0100 Nicotiana tabacum HOM05D006585 ORTHO05D007798 4.3e-50 202.6 271 43.5
Gohir.D02G159700 Gossypium hirsutum HOM05D006585 ORTHO05D007798 2.1e-49 200.3 252 43.3
AT1G10710 Arabidopsis thaliana HOM05D006585 ORTHO05D007798 2.8e-49 199.9 349 39.3
Sp1g09410 Schrenkiella parvula HOM05D006585 ORTHO05D007798 1.0e-48 198.0 337 39.5
Peaxi162Scf00128g00033 Petunia axillaris HOM05D006585 ORTHO05D007798 1.4e-48 197.6 293 40.6
AL1G21590 Arabidopsis lyrata HOM05D006585 ORTHO05D007798 1.8e-48 197.2 347 38.9
Thhalv10007956m.g Eutrema salsugineum HOM05D006585 ORTHO05D007798 1.8e-48 197.2 371 36.9
Carub.0001s1022 Capsella rubella HOM05D006585 ORTHO05D007798 3.4e-47 193.0 358 39.1
Dinv20613 Davidia involucrata HOM05D006585 ORTHO05D007798 5.8e-47 192.2 299 40.1
Nn3g16750 Nelumbo nucifera HOM05D006585 ORTHO05D007798 5.8e-47 192.2 305 43.0
Solyc05g013360.3 Solanum lycopersicum HOM05D006585 ORTHO05D007798 4.9e-46 189.1 286 42.0
MBI16_g23844_MAGBIO Magnolia biondii HOM05D006585 ORTHO05D007798 2.0e-44 183.7 308 42.2
BcaC07g41800 Brassica carinata HOM05D006585 ORTHO05D007798 1.0e-43 181.4 356 36.0
HanXRQChr17g0539731 Helianthus annuus HOM05D006585 ORTHO05D007798 1.1e-42 177.9 300 38.3
Sc04g0009420 Simmondsia chinensis HOM05D006585 ORTHO05D007798 2.5e-42 176.8 312 39.1
FAN07G1571 Fragaria x ananassa HOM05D006585 ORTHO05D007798 6.2e-41 172.2 155 54.2
GSVIVG01007676001 Vitis vinifera HOM05D006585 ORTHO05D007798 1.1e-40 171.4 280 41.4
TAR629G0056 Trochodendron aralioides HOM05D006585 ORTHO05D007798 1.8e-40 170.6 249 44.2
CARHR010890 Cardamine hirsuta HOM05D006585 ORTHO05D007798 2.3e-40 170.2 318 39.0
BcaB08g37368 Brassica carinata HOM05D006585 ORTHO05D007798 3.1e-40 169.9 407 32.9
Nitab4.5_0002552g0050 Nicotiana tabacum HOM05D006585 ORTHO05D007798 3.1e-40 169.9 269 40.1
Aa31LG1G4120 Aethionema arabicum HOM05D006585 ORTHO05D007798 6.8e-40 168.7 291 39.2
Glyma.08G283200 Glycine max HOM05D006585 ORTHO05D007798 3.4e-39 166.4 182 52.2
C08p48610 Brassica napus HOM05D006585 ORTHO05D007798 4.4e-39 166.0 376 33.5
BraA09t41832Z Brassica rapa HOM05D006585 ORTHO05D007798 3.7e-38 162.9 381 33.3
FAN22G0568 Fragaria x ananassa HOM05D006585 ORTHO05D007798 6.4e-38 162.2 172 48.8
Haze_12236 Corylus avellana HOM05D006585 ORTHO05D007798 8.3e-38 161.8 222 47.7
Lsat_1_v5_gn_3_28841 Lactuca sativa HOM05D006585 ORTHO05D007798 1.1e-37 161.4 312 35.3
EL10Ac6g13783 Beta vulgaris HOM05D006585 ORTHO05D007798 4.1e-37 159.5 287 38.3
SGA_v2.0_scaffold63G21726 Striga asiatica HOM05D006585 ORTHO05D007798 7.1e-37 158.7 308 34.4
Ah.03g133160 Amaranthus hybridus HOM05D006585 ORTHO05D007798 1.6e-36 157.5 290 35.9
AUR62024297 Chenopodium quinoa HOM05D006585 ORTHO05D007798 7.8e-36 155.2 294 37.4
BolC8t52400H Brassica oleracea HOM05D006585 ORTHO05D007798 3.3e-34 149.8 419 30.5
Migut.E00193 Erythranthe guttata HOM05D006585 ORTHO05D007798 1.2e-33 147.9 281 36.3
A09p64570 Brassica napus HOM05D006585 ORTHO05D007798 6.8e-32 142.1 388 32.2
Cc11_g15560 Coffea canephora HOM05D006585 ORTHO05D007798 8.9e-32 141.7 325 36.3
COL.COLO4_30156 Corchorus olitorius HOM05D006585 ORTHO05D007798 4.4e-31 139.4 281 35.2
SGA_v2.0_scaffold87G27084 Striga asiatica HOM05D006585 ORTHO05D007798 8.4e-30 135.2 333 30.0
ATR1154G038 Amborella trichopoda HOM05D006585 ORTHO05D007798 1.2e-28 131.3 293 33.8
ECA246G2324 Erigeron canadensis HOM05D000225 ORTHO05D002520 1.6e-28 131.0 256 36.3
Zm00001eb382430 Zea mays HOM05D006585 ORTHO05D007798 1.0e-27 128.3 351 31.9
CSS0026295 Camellia sinensis var. sinensis HOM05D006585 ORTHO05D007798 2.5e-26 123.6 121 52.1
Lalb_Chr16g0392231 Lupinus albus HOM05D006585 ORTHO05D007798 2.5e-26 123.6 95 66.3
PGR119G1584 Punica granatum HOM05D006585 ORTHO05D007798 1.6e-25 120.9 311 34.7
Actinidia08143 Actinidia chinensis HOM05D006585 ORTHO05D007798 3.1e-24 116.7 343 33.2
Atru.chr11.2118 Acer truncatum HOM05D006585 ORTHO05D007798 5.2e-24 115.9 284 34.2
Atru.chr11.2134 Acer truncatum HOM05D006585 ORTHO05D007798 5.2e-24 115.9 284 34.2
Thecc.03G022200 Theobroma cacao HOM05D006585 ORTHO05D007798 2.0e-23 114.0 231 35.5
ATR1154G026 Amborella trichopoda HOM05D006585 ORTHO05D007798 1.4e-21 107.8 243 32.9
Rhsim12G0041300 Rhododendron simsii HOM05D006585 ORTHO05D007798 1.2e-20 104.8 420 28.1
HPP92_008331 Vanilla planifolia HOM05D006585 ORTHO05D007798 6.0e-20 102.4 134 39.6
PSO832G3049 Papaver somniferum HOM05D000629 ORTHO05D007798 5.1e-19 99.4 188 34.6
SalBow8G1297 Salvia bowleyana HOM05D006585 ORTHO05D007798 5.1e-19 99.4 135 40.0
PSO063G7660 Papaver somniferum HOM05D000629 ORTHO05D007798 1.9e-18 97.4 190 34.7
SHI17754 Sapria himalayana HOM05D006585 ORTHO05D007798 1.3e-17 94.7 225 31.1
Oeu056719.1 Olea europaea HOM05D006585 ORTHO05D007798 4.0e-16 89.7 168 36.3
Cc04_g11830 Coffea canephora HOM05D006585 ORTHO05D007798 2.0e-15 87.4 110 45.5
PSO832G2940 Papaver somniferum HOM05D006585 ORTHO05D007798 3.4e-15 86.7 155 36.8
PSO063G0496 Papaver somniferum HOM05D006585 ORTHO05D007798 1.4e-13 81.3 315 28.9
HPP92_008334 Vanilla planifolia HOM05D034240 ORTHO05D007798 5.4e-13 79.3 207 31.9
CDE06G0796 Ceratophyllum demersum HOM05D006585 ORTHO05D007798 3.5e-12 76.6 298 27.5
SEGI_25539 Sequoiadendron giganteum HOM05D006585 ORTHO05D007798 7.9e-12 75.5 265 25.7
SGA_v2.0_scaffold779G53588 Striga asiatica HOM05D006585 ORTHO05D007798 5.1e-11 72.8 95 37.9
SGA_v2.0_scaffold34G13586 Striga asiatica HOM05D006585 ORTHO05D007798 8.7e-11 72.0 95 37.9
EL10Ac5g10683 Beta vulgaris HOM05D006585 ORTHO05D007798 3.3e-10 70.1 112 37.5
SHI17755 Sapria himalayana HOM05D006585 ORTHO05D007798 1.3e-09 68.2 164 36.6
SalBow8G2270 Salvia bowleyana HOM05D006585 ORTHO05D007798 1.1e-08 65.1 191 29.3
Glyma.08G283250 Glycine max HOM05D006585 ORTHO05D007798 3.1e-08 63.5 56 53.6
AUR62005444 Chenopodium quinoa HOM05D006585 ORTHO05D007798 2.9e-06 57.0 145 32.4


User provided reference genes

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