Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.I63G1M Arachis hypogaea HOM05D004241 ORTHO05D006031 1.7e-31 138.7 66 100.0
arahy.Tifrunner.gnm1.ann1.ZW8CA6 Arachis hypogaea HOM05D004241 ORTHO05D006031 4.4e-24 114.0 61 91.8
arahy.Tifrunner.gnm1.ann1.8A66NB Arachis hypogaea HOM05D004241 ORTHO05D006031 1.2e-21 105.9 58 89.7
arahy.Tifrunner.gnm1.ann1.12W07B Arachis hypogaea HOM05D004241 ORTHO05D001299 1.0e-20 102.8 61 82.0
arahy.Tifrunner.gnm1.ann1.DE57MX Arachis hypogaea HOM05D004241 ORTHO05D001299 1.7e-20 102.1 61 82.0
Lalb_Chr19g0124421 Lupinus albus HOM05D004241 ORTHO05D006031 1.7e-20 102.1 58 84.5
Sc07g0006700 Simmondsia chinensis HOM05D004241 ORTHO05D006031 3.8e-20 100.9 58 82.8
VMungo1383G0980 Vigna mungo HOM05D004241 ORTHO05D006031 3.8e-20 100.9 58 84.5
A01p23250 Brassica napus HOM05D003030 ORTHO05D006031 6.6e-20 100.1 58 84.5
C01p28890 Brassica napus HOM05D003030 ORTHO05D006031 6.6e-20 100.1 58 84.5
BolC1t02821H Brassica oleracea HOM05D004241 ORTHO05D006031 6.6e-20 100.1 58 84.5
BraA01t02235Z Brassica rapa HOM05D004241 ORTHO05D006031 6.6e-20 100.1 58 84.5
Hund14874 Selenicereus undatus HOM05D004241 ORTHO05D006031 6.6e-20 100.1 58 82.8
Ah.12g058810 Amaranthus hybridus HOM05D004241 ORTHO05D006031 8.6e-20 99.8 54 87.0
Glyma.07G152300 Glycine max HOM05D004241 ORTHO05D006031 1.1e-19 99.4 58 84.5
Lj1g0026131 Lotus japonicus HOM05D004241 ORTHO05D006031 1.1e-19 99.4 58 81.0
TPR.G35446 Trifolium pratense HOM05D004241 ORTHO05D006031 1.1e-19 99.4 58 82.8
CiPaw.09G211300 Carya illinoinensis HOM05D004241 ORTHO05D006031 1.5e-19 99.0 58 81.0
ClCG04G006920 Citrullus lanatus HOM05D004241 ORTHO05D006031 1.5e-19 99.0 58 82.8
MELO3C026000.2 Cucumis melo HOM05D004241 ORTHO05D006031 1.5e-19 99.0 58 82.8
Eucgr.A00535 Eucalyptus grandis HOM05D004241 ORTHO05D006031 1.5e-19 99.0 57 82.5
Haze_21025 Corylus avellana HOM05D004241 ORTHO05D006031 1.9e-19 98.6 58 81.0
Medtr7g069210 Medicago truncatula HOM05D004241 ORTHO05D006031 1.9e-19 98.6 58 82.8
Glyma.18G203400 Glycine max HOM05D004241 ORTHO05D006031 2.5e-19 98.2 58 82.8
TAR636G3470 Trochodendron aralioides HOM05D004241 ORTHO05D006031 2.5e-19 98.2 58 82.8
Atru.chr8.2269 Acer truncatum HOM05D004241 ORTHO05D006031 3.3e-19 97.8 58 81.0
Cfa017183 Carpinus fangiana HOM05D004241 ORTHO05D006031 3.3e-19 97.8 58 81.0
AUR62030480 Chenopodium quinoa HOM05D004241 ORTHO05D006031 3.3e-19 97.8 54 83.3
AUR62030817 Chenopodium quinoa HOM05D004241 ORTHO05D006031 3.3e-19 97.8 54 83.3
PGR031G0770 Punica granatum HOM05D004241 ORTHO05D006031 3.3e-19 97.8 58 81.0
Duzib128G1618 Durio zibethinus HOM05D004241 ORTHO05D006031 4.2e-19 97.4 58 82.8
Prupe.6G280100 Prunus persica HOM05D004241 ORTHO05D006031 4.2e-19 97.4 57 80.7
BcaC09g50106 Brassica carinata HOM05D004241 ORTHO05D006031 5.5e-19 97.1 58 82.8
Cpa.g.sc11.77 Carica papaya HOM05D004241 ORTHO05D006031 5.5e-19 97.1 58 81.0
CiPaw.10G157700 Carya illinoinensis HOM05D004241 ORTHO05D006031 5.5e-19 97.1 58 82.8
CsaV3_4G026340 Cucumis sativus L. HOM05D004241 ORTHO05D006031 5.5e-19 97.1 58 81.0
MD00G1061800 Malus domestica HOM05D004241 ORTHO05D006031 5.5e-19 97.1 54 83.3
TAR633G2528 Trochodendron aralioides HOM05D004241 ORTHO05D006031 5.5e-19 97.1 58 81.0
Ca_07660_v3 Cicer arietinum L. HOM05D004241 ORTHO05D006031 7.2e-19 96.7 58 79.3
Ciclev10011985m.g Citrus clementina HOM05D004241 ORTHO05D006031 7.2e-19 96.7 57 78.9
Thecc.05G012600 Theobroma cacao HOM05D004241 ORTHO05D006031 7.2e-19 96.7 58 81.0
FvH4_6g11190 Fragaria vesca HOM05D004241 ORTHO05D006031 9.5e-19 96.3 58 77.6
FAN02G4369 Fragaria x ananassa HOM05D004241 ORTHO05D006031 9.5e-19 96.3 58 77.6
FAN09G0084 Fragaria x ananassa HOM05D004241 ORTHO05D006031 9.5e-19 96.3 58 77.6
FAN09G0733 Fragaria x ananassa HOM05D004241 ORTHO05D006031 9.5e-19 96.3 58 77.6
Nn2g13169 Nelumbo nucifera HOM05D004241 ORTHO05D006031 9.5e-19 96.3 57 78.9
THA.LOC104805975 Tarenaya hassleriana HOM05D004241 ORTHO05D006031 9.5e-19 96.3 58 84.5
Aa31LG10G9090 Aethionema arabicum HOM05D004241 ORTHO05D006031 1.2e-18 95.9 58 84.5
EL10Ac5g12540 Beta vulgaris HOM05D004241 ORTHO05D006031 1.2e-18 95.9 58 77.6
MBI15_g19417_MAGBIO Magnolia biondii HOM05D004241 ORTHO05D006031 1.2e-18 95.9 58 77.6
GSVIVG01011187001 Vitis vinifera HOM05D004241 ORTHO05D006031 1.2e-18 95.9 58 79.3
Duzib093G0784 Durio zibethinus HOM05D004241 ORTHO05D006031 1.6e-18 95.5 58 79.3
Nn2g10892 Nelumbo nucifera HOM05D004241 ORTHO05D006031 1.6e-18 95.5 57 80.7
Phvul.008G096500 Phaseolus vulgaris HOM05D004241 ORTHO05D006031 2.1e-18 95.1 58 81.0
AL5G32280 Arabidopsis lyrata HOM05D004241 ORTHO05D006031 2.8e-18 94.7 58 82.8
Gohir.A04G092900 Gossypium hirsutum HOM05D004241 ORTHO05D006031 2.8e-18 94.7 58 79.3
Gohir.D04G132200 Gossypium hirsutum HOM05D004241 ORTHO05D006031 2.8e-18 94.7 58 79.3
Gorai.012G116000 Gossypium raimondii HOM05D004241 ORTHO05D006031 2.8e-18 94.7 58 79.3
Manes.09G106900 Manihot esculenta HOM05D004241 ORTHO05D006031 2.8e-18 94.7 57 80.7
BcaB01g00414 Brassica carinata HOM05D004241 ORTHO05D006031 3.6e-18 94.4 58 82.8
CDE04G1685 Ceratophyllum demersum HOM05D004241 ORTHO05D006031 3.6e-18 94.4 52 86.5
RcHm_v2.0_Chr3g0462631 Rosa chinensis HOM05D004241 ORTHO05D006031 3.6e-18 94.4 54 81.5
MSTRG.18996 Avicennia marina HOM05D004241 ORTHO05D006031 4.7e-18 94.0 59 72.9
BcaNung00368 Brassica carinata HOM05D004241 ORTHO05D006031 4.7e-18 94.0 59 81.4
BcaB01g00474 Brassica carinata HOM05D004241 ORTHO05D006031 6.1e-18 93.6 59 81.4
A09p44970 Brassica napus HOM05D004241 ORTHO05D006031 6.1e-18 93.6 59 81.4
C08p27050 Brassica napus HOM05D004241 ORTHO05D006031 6.1e-18 93.6 59 83.1
BolC8t50320H Brassica oleracea HOM05D004241 ORTHO05D006031 6.1e-18 93.6 59 81.4
BraA09t39957Z Brassica rapa HOM05D004241 ORTHO05D006031 6.1e-18 93.6 59 81.4
CSS0018345 Camellia sinensis var. sinensis HOM05D004241 ORTHO05D006031 6.1e-18 93.6 58 75.9
Psat3g126440 Pisum sativum HOM05D004241 ORTHO05D006031 6.1e-18 93.6 57 78.9
AT3G51820 Arabidopsis thaliana HOM05D004241 ORTHO05D006031 8.0e-18 93.2 58 81.0
Migut.J00141 Erythranthe guttata HOM05D004241 ORTHO05D006031 8.0e-18 93.2 59 71.2
Thhalv10010408m.g Eutrema salsugineum HOM05D004241 ORTHO05D006031 8.0e-18 93.2 58 81.0
Nitab4.5_0000261g0130 Nicotiana tabacum HOM05D004241 ORTHO05D006031 8.0e-18 93.2 58 75.9
Nitab4.5_0008676g0010 Nicotiana tabacum HOM05D004241 ORTHO05D006031 8.0e-18 93.2 58 75.9
Sed0025380 Sechium edule HOM05D004241 ORTHO05D006031 8.0e-18 93.2 54 81.5
CANSAT35G0589 Cannabis sativa HOM05D004241 ORTHO05D006031 1.0e-17 92.8 55 81.8
MD12G1171900 Malus domestica HOM05D004241 ORTHO05D006031 1.4e-17 92.4 54 79.6
PGSC0003DMG400008481 Solanum tuberosum HOM05D004241 ORTHO05D006031 1.4e-17 92.4 58 74.1
CARHR161450 Cardamine hirsuta HOM05D004241 ORTHO05D006031 1.8e-17 92.0 58 81.0
Oeu017800.1 Olea europaea HOM05D004241 ORTHO05D006031 1.8e-17 92.0 58 72.4
Peaxi162Scf00890g00119 Petunia axillaris HOM05D004241 ORTHO05D006031 1.8e-17 92.0 58 74.1
Carub.0005s1817 Capsella rubella HOM05D004241 ORTHO05D006031 2.3e-17 91.7 54 83.3
Dinv13159 Davidia involucrata HOM05D004241 ORTHO05D006031 2.3e-17 91.7 58 75.9
Sopen09g007610 Solanum pennellii HOM05D004241 ORTHO05D006031 2.3e-17 91.7 58 72.4
Sp5g10450 Schrenkiella parvula HOM05D004241 ORTHO05D006031 3.0e-17 91.3 58 81.0
TWI74G0606 Tripterygium wilfordii HOM05D004241 ORTHO05D006031 3.0e-17 91.3 60 78.3
Lj3A950T42 Lonicera japonica HOM05D004241 ORTHO05D006031 4.0e-17 90.9 57 73.7
Zm00001eb286140 Zea mays HOM05D004241 ORTHO05D006031 4.0e-17 90.9 58 75.9
COL.COLO4_03385 Corchorus olitorius HOM05D004241 ORTHO05D006031 5.2e-17 90.5 59 78.0
Oeu038754.1 Olea europaea HOM05D004241 ORTHO05D006031 5.2e-17 90.5 58 72.4
Sabra06G0078400 Salix brachista HOM05D004241 ORTHO05D006031 5.2e-17 90.5 57 77.2
CDE08G0537 Ceratophyllum demersum HOM05D004241 ORTHO05D006031 6.8e-17 90.1 52 82.7
Rhsim04G0126500 Rhododendron simsii HOM05D004241 ORTHO05D006031 6.8e-17 90.1 56 76.8
Rhsim04G0126400 Rhododendron simsii HOM05D004241 ORTHO05D006031 8.9e-17 89.7 55 74.5
Potri.006G102100 Populus trichocarpa HOM05D004241 ORTHO05D006031 1.2e-16 89.4 47 89.4
QL07p035079 Quercus lobata HOM05D004241 ORTHO05D006031 1.2e-16 89.4 57 75.4
ECA236G0379 Erigeron canadensis HOM05D000031 ORTHO05D006031 1.5e-16 89.0 57 75.4
Aqoxy2G00847 Aquilegia oxysepala HOM05D004241 ORTHO05D006031 2.0e-16 88.6 47 89.4
HanXRQChr06g0182231 Helianthus annuus HOM05D004241 ORTHO05D006031 2.0e-16 88.6 58 72.4
PSO339G5814 Papaver somniferum HOM05D004241 ORTHO05D006031 2.0e-16 88.6 58 74.1
PSO801G0614 Papaver somniferum HOM05D004241 ORTHO05D006031 2.0e-16 88.6 58 74.1
SalBow5G3053 Salvia bowleyana HOM05D004241 ORTHO05D006031 2.6e-16 88.2 62 66.1
CAN.G283.14 Capsicum annuum HOM05D004241 ORTHO05D006031 3.4e-16 87.8 58 70.7
ATR0681G392 Amborella trichopoda HOM05D004241 ORTHO05D006031 5.7e-16 87.0 47 87.2
Hma1.2p1_0362F.1_g136490 Hydrangea macrophylla HOM05D004241 ORTHO05D006031 5.7e-16 87.0 58 70.7
Lsat_1_v5_gn_8_101501 Lactuca sativa HOM05D004241 ORTHO05D006031 7.5e-16 86.7 54 72.2
HPP92_013785 Vanilla planifolia HOM05D004241 ORTHO05D006031 7.5e-16 86.7 48 83.3
SEGI_30165 Sequoiadendron giganteum HOM05D004241 ORTHO05D006031 1.7e-15 85.5 60 70.0
Cc06_g01120 Coffea canephora HOM05D004241 ORTHO05D006031 2.2e-15 85.1 47 83.0
Dinv04461 Davidia involucrata HOM05D004241 ORTHO05D006031 2.8e-15 84.7 58 70.7
Dinv05780 Davidia involucrata HOM05D004241 ORTHO05D006031 2.8e-15 84.7 58 70.7
Potri.016G119400 Populus trichocarpa HOM05D004241 ORTHO05D006031 2.8e-15 84.7 59 76.3
Os05g0349700 Oryza sativa ssp. japonica HOM05D004241 ORTHO05D006031 3.7e-15 84.3 58 74.1
Pp3c13_13830 Physcomitrium patens HOM05D004241 ORTHO05D006031 3.7e-15 84.3 58 67.2
Actinidia05359 Actinidia chinensis HOM05D004241 ORTHO05D006031 4.9e-15 84.0 54 72.2
arahy.Tifrunner.gnm1.ann1.YJ5G8U Arachis hypogaea HOM05D004241 ORTHO05D006031 6.3e-15 83.6 49 79.6
DCAR_015394 Daucus carota HOM05D004241 ORTHO05D006031 6.3e-15 83.6 57 68.4
unitig_578.g15901 Utricularia gibba HOM05D004241 ORTHO05D006031 6.3e-15 83.6 54 70.4
arahy.Tifrunner.gnm1.ann1.F5Z0S5 Arachis hypogaea HOM05D004241 ORTHO05D006031 8.3e-15 83.2 49 79.6
Sabra16G0115300 Salix brachista HOM05D004241 ORTHO05D006031 1.1e-14 82.8 47 85.1
Lj2C71T11 Lonicera japonica HOM05D004241 ORTHO05D006031 2.4e-14 81.6 57 68.4
Dinv01710 Davidia involucrata HOM05D004241 ORTHO05D006031 4.1e-14 80.9 58 69.0
CDE04G2983 Ceratophyllum demersum HOM05D004241 ORTHO05D006031 5.4e-14 80.5 49 73.5
HPP92_013874 Vanilla planifolia HOM05D004241 ORTHO05D006031 7.0e-14 80.1 49 79.6
Aqoxy4G02498 Aquilegia oxysepala HOM05D004241 ORTHO05D006031 9.2e-14 79.7 53 69.8
Mapoly0045s0080 Marchantia polymorpha HOM05D004241 ORTHO05D006031 4.5e-13 77.4 47 74.5
AagrBONN_evm.TU.Sc2ySwM_228.1146 Anthoceros agrestis HOM05D004241 ORTHO05D006031 1.0e-12 76.3 71 56.3
SMO271G0089 Selaginella moellendorffii HOM05D004241 ORTHO05D006031 1.0e-12 76.3 46 71.7
PSO339G4053 Papaver somniferum HOM05D004241 ORTHO05D006031 5.0e-12 73.9 47 76.6
PSO384G4055 Papaver somniferum HOM05D004241 ORTHO05D006031 5.0e-12 73.9 47 76.6
arahy.Tifrunner.gnm1.ann1.IR2XKV Arachis hypogaea HOM05D004241 ORTHO05D006031 1.9e-11 72.0 42 88.1
arahy.Tifrunner.gnm1.ann1.44A4XL Arachis hypogaea HOM05D004241 ORTHO05D026924 9.5e-11 69.7 39 89.7
arahy.Tifrunner.gnm1.ann1.Z8S8NK Arachis hypogaea HOM05D004241 ORTHO05D006031 9.5e-11 69.7 39 89.7
Cre06.g294750 Chlamydomonas reinhardtii HOM05D004241 ORTHO05D006031 8.0e-10 66.6 46 65.2
MCO16G058 Micromonas commoda HOM05D004241 ORTHO05D006031 8.0e-10 66.6 47 61.7
FAN14G4537 Fragaria x ananassa HOM05D004241 ORTHO05D006031 1.8e-09 65.5 32 87.5
Prupe.4G268700 Prunus persica HOM05D004241 ORTHO05D006031 6.8e-09 63.5 29 96.6
COL.COLO4_19973 Corchorus olitorius HOM05D004241 ORTHO05D006031 4.4e-08 60.8 30 86.7
vmacro08890 Vaccinium macrocarpon HOM05D004241 ORTHO05D006031 3.7e-07 57.8 28 89.3
vmacro08889 Vaccinium macrocarpon HOM05D004241 ORTHO05D006031 1.9e-06 55.5 27 88.9


User provided reference genes

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