Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.I5QRDP Arachis hypogaea HOM05D003903 ORTHO05D004828 2.3e-105 385.6 194 100.0
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 2.6e-48 196.1 165 67.9
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 7.0e-38 161.4 137 60.6
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 5.0e-36 155.2 139 57.6
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 2.8e-34 149.4 188 46.3
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 1.1e-33 147.5 138 55.1
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 1.8e-33 146.7 137 54.0
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 2.3e-33 146.4 180 46.1
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 4.0e-33 145.6 128 57.8
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 5.2e-33 145.2 180 46.1
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 6.8e-33 144.8 138 54.3
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 1.2e-32 144.1 181 47.5
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 2.6e-32 142.9 138 53.6
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 2.6e-32 142.9 138 51.4
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 4.4e-32 142.1 142 53.5
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 4.4e-32 142.1 139 53.2
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 4.4e-32 142.1 187 46.5
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 4.4e-32 142.1 187 45.5
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 9.8e-32 141.0 143 51.7
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 9.8e-32 141.0 188 43.6
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 9.8e-32 141.0 137 51.1
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 1.3e-31 140.6 137 51.8
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 1.3e-31 140.6 181 45.9
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 1.3e-31 140.6 137 50.4
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 2.2e-31 139.8 133 54.1
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 2.9e-31 139.4 144 51.4
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 2.9e-31 139.4 137 52.6
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 3.7e-31 139.0 137 51.8
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 1.1e-30 137.5 128 56.2
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 1.9e-30 136.7 144 50.7
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 1.9e-30 136.7 128 51.6
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 3.2e-30 136.0 169 42.6
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 5.4e-30 135.2 137 48.9
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 9.2e-30 134.4 128 53.9
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 9.2e-30 134.4 128 53.9
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 1.2e-29 134.0 128 50.8
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 1.6e-29 133.7 128 53.1
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 1.6e-29 133.7 128 54.7
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.6e-29 133.7 128 53.9
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 3.5e-29 132.5 128 53.9
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 3.5e-29 132.5 128 49.2
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 6.0e-29 131.7 124 53.2
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 6.0e-29 131.7 124 54.0
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 6.0e-29 131.7 137 47.4
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 7.8e-29 131.3 128 50.8
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 7.8e-29 131.3 128 51.6
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.3e-28 130.6 128 53.9
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.3e-28 130.6 128 53.9
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.3e-28 130.6 128 53.9
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 1.7e-28 130.2 128 49.2
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 1.7e-28 130.2 128 50.8
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 1.7e-28 130.2 137 48.9
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 2.3e-28 129.8 138 47.1
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 2.3e-28 129.8 138 47.1
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 2.3e-28 129.8 138 47.1
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 2.3e-28 129.8 127 48.8
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 2.3e-28 129.8 137 48.2
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 2.3e-28 129.8 130 48.5
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 2.3e-28 129.8 128 53.9
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 3.9e-28 129.0 137 45.3
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.9e-28 129.0 128 53.1
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 6.6e-28 128.3 128 51.6
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 8.6e-28 127.9 138 45.7
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 8.6e-28 127.9 128 51.6
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 8.6e-28 127.9 124 51.6
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 8.6e-28 127.9 136 45.6
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 8.6e-28 127.9 137 47.4
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 1.1e-27 127.5 128 45.3
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 1.1e-27 127.5 124 49.2
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.1e-27 127.5 124 50.8
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.1e-27 127.5 124 50.8
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.1e-27 127.5 124 51.6
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 1.5e-27 127.1 128 49.2
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 1.5e-27 127.1 127 49.6
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 1.5e-27 127.1 138 45.7
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 1.5e-27 127.1 124 54.0
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.5e-27 127.1 128 53.1
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 1.9e-27 126.7 128 49.2
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 2.5e-27 126.3 124 46.8
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 3.3e-27 125.9 128 50.8
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 3.3e-27 125.9 124 50.8
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 4.3e-27 125.6 136 47.1
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 5.6e-27 125.2 124 50.0
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 7.3e-27 124.8 139 44.6
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 7.3e-27 124.8 126 46.8
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 7.3e-27 124.8 126 46.8
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 9.5e-27 124.4 157 45.2
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 9.5e-27 124.4 124 50.0
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 1.6e-26 123.6 137 43.8
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 3.6e-26 122.5 124 49.2
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 3.6e-26 122.5 125 52.8
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 3.6e-26 122.5 125 52.8
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 3.6e-26 122.5 137 43.8
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 3.6e-26 122.5 128 46.1
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 4.7e-26 122.1 128 46.9
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 4.7e-26 122.1 137 43.8
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 6.2e-26 121.7 128 46.9
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 6.2e-26 121.7 176 38.1
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 6.2e-26 121.7 137 43.1
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 6.2e-26 121.7 130 45.4
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 6.2e-26 121.7 128 46.9
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 8.1e-26 121.3 137 47.4
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 8.1e-26 121.3 128 43.8
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 8.1e-26 121.3 172 37.2
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 1.1e-25 120.9 125 51.2
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 1.1e-25 120.9 125 52.0
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 1.1e-25 120.9 125 51.2
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 1.1e-25 120.9 125 52.0
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 1.4e-25 120.6 131 49.6
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 1.8e-25 120.2 139 45.3
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 2.3e-25 119.8 137 43.1
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 3.1e-25 119.4 167 42.5
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 4.0e-25 119.0 137 43.1
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 4.0e-25 119.0 137 43.1
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 4.0e-25 119.0 128 47.7
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 6.8e-25 118.2 128 43.0
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 6.8e-25 118.2 137 46.0
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 6.8e-25 118.2 128 44.5
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 6.8e-25 118.2 173 39.3
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 8.9e-25 117.9 137 46.0
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 8.9e-25 117.9 137 42.3
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 8.9e-25 117.9 137 42.3
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 1.2e-24 117.5 106 51.9
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 2.0e-24 116.7 128 44.5
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 2.0e-24 116.7 137 45.3
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 2.0e-24 116.7 126 45.2
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 2.6e-24 116.3 172 34.9
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 2.6e-24 116.3 120 49.2
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 4.4e-24 115.5 120 49.2
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 4.4e-24 115.5 126 43.7
MBI09_g39159_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 7.6e-24 114.8 126 46.0
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 1.3e-23 114.0 124 46.0
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 1.3e-23 114.0 124 44.4
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 1.7e-23 113.6 137 44.5
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 2.9e-23 112.8 134 43.3
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 2.9e-23 112.8 126 47.6
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 2.9e-23 112.8 124 45.2
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 3.8e-23 112.5 128 42.2
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 6.4e-23 111.7 126 46.8
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 3.2e-22 109.4 139 41.7
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 4.1e-22 109.0 115 47.8
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 4.1e-22 109.0 139 41.7
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 5.4e-22 108.6 130 42.3
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 7.1e-22 108.2 126 44.4
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 7.1e-22 108.2 130 43.8
MBI15_g28805_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 4.6e-21 105.5 99 49.5
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 7.8e-21 104.8 138 40.6
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 1.7e-20 103.6 130 40.8
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 1.1e-19 100.9 132 38.6
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 7.3e-19 98.2 99 48.5
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 1.2e-18 97.4 133 36.1
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 1.4e-17 94.0 134 39.6
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 2.6e-16 89.7 144 36.1
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 2.9e-15 86.3 79 49.4
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.1e-11 74.3 152 32.2
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 1.9e-11 73.6 146 32.9
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 4.3e-11 72.4 147 32.7
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 3.6e-10 69.3 148 29.7
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 3.1e-09 66.2 104 33.7
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.5e-08 63.9 140 29.3
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.0e-08 63.5 142 30.3
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 2.9e-07 59.7 68 41.2


User provided reference genes

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