Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.I5Q2RG Arachis hypogaea HOM05D003792 ORTHO05D003195 9.7e-175 616.7 309 100.0
arahy.Tifrunner.gnm1.ann1.SW5XY7 Arachis hypogaea HOM05D003792 ORTHO05D003195 8.8e-168 593.6 309 97.1
Lj4g0023306 Lotus japonicus HOM05D003792 ORTHO05D003195 3.2e-69 266.2 299 52.8
Lalb_Chr05g0219211 Lupinus albus HOM05D003792 ORTHO05D003195 5.5e-69 265.4 290 54.8
Medtr4g085990 Medicago truncatula HOM05D003792 ORTHO05D003195 9.4e-69 264.6 273 53.5
Glyma.07G213000 Glycine max HOM05D003792 ORTHO05D003195 2.6e-66 256.5 298 51.7
TPR.G12693 Trifolium pratense HOM05D003792 ORTHO05D003195 1.0e-59 234.6 295 50.8
Glyma.02G131800 Glycine max HOM05D003792 ORTHO05D003195 1.8e-59 233.8 273 53.1
Lalb_Chr09g0328351 Lupinus albus HOM05D003792 ORTHO05D003195 3.5e-55 219.5 297 51.5
VMungo0251G0642 Vigna mungo HOM05D003792 ORTHO05D003195 2.6e-50 203.4 256 48.0
Phvul.003G291900 Phaseolus vulgaris HOM05D003792 ORTHO05D003195 7.7e-47 191.8 186 53.8
Psat7g125520 Pisum sativum HOM05D003792 ORTHO05D003195 4.3e-45 186.0 207 54.1
Ca_18691_v3 Cicer arietinum L. HOM05D003792 ORTHO05D003195 1.8e-43 180.6 181 54.1
QL11p035325 Quercus lobata HOM05D003792 ORTHO05D003195 8.9e-35 151.8 305 38.4
Haze_10092 Corylus avellana HOM05D003792 ORTHO05D003195 4.9e-33 146.0 310 39.7
CANSAT25G3506 Cannabis sativa HOM05D003792 ORTHO05D003195 4.7e-28 129.4 282 36.5
Potri.009G101400 Populus trichocarpa HOM05D003792 ORTHO05D003195 1.1e-27 128.3 318 34.6
CANSAT25G2784 Cannabis sativa HOM05D003792 ORTHO05D003195 2.3e-27 127.1 284 35.6
Sabra09G0077200 Salix brachista HOM05D003792 ORTHO05D003195 2.9e-25 120.2 276 34.8
Thecc.02G101400 Theobroma cacao HOM05D003792 ORTHO05D003195 4.9e-25 119.4 313 32.6
MD05G1081700 Malus domestica HOM05D003792 ORTHO05D003195 1.6e-23 114.4 268 35.8
Dinv42162 Davidia involucrata HOM05D003792 ORTHO05D003195 3.5e-23 113.2 293 34.1
Duzib248G0608 Durio zibethinus HOM05D003792 ORTHO05D003195 1.9e-21 107.5 313 33.5
Gorai.008G024800 Gossypium raimondii HOM05D003792 ORTHO05D003195 5.6e-21 105.9 316 31.6
Gohir.D12G024500 Gossypium hirsutum HOM05D003792 ORTHO05D003195 9.5e-21 105.1 316 32.3
Atru.chr5.2692 Acer truncatum HOM05D003792 ORTHO05D003195 2.8e-20 103.6 297 33.0
Gohir.A12G023800 Gossypium hirsutum HOM05D003792 ORTHO05D003195 4.4e-18 96.3 296 31.1
CSS0015140 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 7.6e-18 95.5 309 31.4
Duzib052G0481 Durio zibethinus HOM05D003792 ORTHO05D003195 1.7e-17 94.4 309 29.4
Dinv15716 Davidia involucrata HOM05D003792 ORTHO05D003195 4.9e-17 92.8 255 32.2
Actinidia00436 Actinidia chinensis HOM05D003792 ORTHO05D003195 5.4e-16 89.4 314 32.2
Cpa.g.sc62.6 Carica papaya HOM05D003792 ORTHO05D003195 7.1e-16 89.0 361 28.5
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 1.2e-15 88.2 268 27.6
CiPaw.05G007500 Carya illinoinensis HOM05D003792 ORTHO05D003195 6.0e-15 85.9 235 34.5
Potri.004G140701 Populus trichocarpa HOM05D003792 ORTHO05D003195 1.3e-14 84.7 249 32.1
PGR042G0828 Punica granatum HOM05D003792 ORTHO05D003195 1.7e-14 84.3 265 29.4
TAR628G0921 Trochodendron aralioides HOM05D003792 ORTHO05D003195 6.6e-14 82.4 280 30.4
Ciclev10029147m.g Citrus clementina HOM05D003792 ORTHO05D003195 2.5e-13 80.5 264 30.7
Actinidia23277 Actinidia chinensis HOM05D003792 ORTHO05D003195 5.6e-13 79.3 279 29.7
CSS0021091 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 5.6e-13 79.3 242 29.3
FAN20G1193 Fragaria x ananassa HOM05D025254 ORTHO05D003195 9.6e-13 78.6 303 31.7
FvH4_2g05920 Fragaria vesca HOM05D025254 ORTHO05D003195 1.6e-12 77.8 288 32.6
TAR381G1051 Trochodendron aralioides HOM05D003792 ORTHO05D003195 1.6e-12 77.8 246 31.3
MELO3C018454.2 Cucumis melo HOM05D003792 ORTHO05D003195 2.1e-12 77.4 259 30.5
Sed0006191 Sechium edule HOM05D003792 ORTHO05D003195 3.6e-12 76.6 241 29.9
FAN27G2730 Fragaria x ananassa HOM05D025254 ORTHO05D003195 4.7e-12 76.3 264 31.4
Gohir.A01G007200 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.4e-11 74.7 279 29.4
COL.COLO4_32649 Corchorus olitorius HOM05D003465 ORTHO05D004034 1.8e-11 74.3 223 31.8
Eucgr.F00223 Eucalyptus grandis HOM05D003792 ORTHO05D003195 2.4e-11 73.9 211 33.2
TAR376G0615 Trochodendron aralioides HOM05D003792 ORTHO05D003195 3.1e-11 73.6 302 28.1
FAN15G2062 Fragaria x ananassa HOM05D025254 ORTHO05D003195 4.0e-11 73.2 264 31.1
Gorai.002G008300 Gossypium raimondii HOM05D003792 ORTHO05D003195 8.9e-11 72.0 279 28.7
ClCG02G005970 Citrullus lanatus HOM05D003792 ORTHO05D003195 1.2e-10 71.6 260 28.5
Potri.014G029000 Populus trichocarpa HOM05D003792 ORTHO05D003195 1.2e-10 71.6 229 28.4
Actinidia22631 Actinidia chinensis HOM05D003792 ORTHO05D003195 1.5e-10 71.2 266 30.5
CiPaw.16G043500 Carya illinoinensis HOM05D003792 ORTHO05D003195 1.5e-10 71.2 201 31.8
vmacro21518 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 2.0e-10 70.9 214 27.6
RcHm_v2.0_Chr6g0257491 Rosa chinensis HOM05D025254 ORTHO05D003195 3.4e-10 70.1 319 29.2
MSTRG.25091 Avicennia marina HOM05D003792 ORTHO05D003195 4.4e-10 69.7 197 29.9
Oeu012963.1 Olea europaea HOM05D003792 ORTHO05D003195 4.4e-10 69.7 209 28.2
Dinv35957 Davidia involucrata HOM05D003792 ORTHO05D003195 9.9e-10 68.6 249 27.3
MD08G1101100 Malus domestica HOM05D003792 ORTHO05D003195 1.3e-09 68.2 231 31.6
Prupe.1G435100 Prunus persica HOM05D003792 ORTHO05D003195 1.3e-09 68.2 206 30.6
Rhsim06G0050200 Rhododendron simsii HOM05D003792 ORTHO05D003195 1.3e-09 68.2 218 29.4
Rhsim11G0165200 Rhododendron simsii HOM05D003792 ORTHO05D003195 1.3e-09 68.2 296 26.0
Cfa018558 Carpinus fangiana HOM05D000207 ORTHO05D000606 2.2e-09 67.4 222 32.9
FAN15G1261 Fragaria x ananassa HOM05D003792 ORTHO05D003195 2.2e-09 67.4 221 31.2
Prupe.8G126300 Prunus persica HOM05D003792 ORTHO05D003195 2.2e-09 67.4 164 32.9
GSVIVG01009490001 Vitis vinifera HOM05D003792 ORTHO05D003195 2.2e-09 67.4 220 28.6
MD15G1082300 Malus domestica HOM05D003792 ORTHO05D003195 3.8e-09 66.6 230 32.6
RcHm_v2.0_Chr6g0307971 Rosa chinensis HOM05D003792 ORTHO05D003195 3.8e-09 66.6 221 29.0
FvH4_2g34400 Fragaria vesca HOM05D003792 ORTHO05D003195 4.9e-09 66.2 221 31.2
Peaxi162Scf00016g01956 Petunia axillaris HOM05D011234 ORTHO05D003195 4.9e-09 66.2 254 30.3
Sabra14G0019900 Salix brachista HOM05D003792 ORTHO05D003195 4.9e-09 66.2 235 29.4
Potri.002G125900 Populus trichocarpa HOM05D003792 ORTHO05D003195 6.4e-09 65.9 224 29.0
Duzib116G0066 Durio zibethinus HOM05D003792 ORTHO05D003195 1.1e-08 65.1 194 31.4
THA.LOC104819577 Tarenaya hassleriana HOM05D009953 ORTHO05D003195 1.4e-08 64.7 280 29.6
CiPaw.15G055900 Carya illinoinensis HOM05D003792 ORTHO05D003195 2.4e-08 63.9 241 30.3
Manes.18G037600 Manihot esculenta HOM05D003792 ORTHO05D003195 2.4e-08 63.9 204 31.4
Cc02_g18840 Coffea canephora HOM05D011234 ORTHO05D003195 3.2e-08 63.5 255 27.1
PSO210G6487 Papaver somniferum HOM05D003792 ORTHO05D003195 3.2e-08 63.5 215 30.7
C07p60100 Brassica napus HOM05D009953 ORTHO05D003195 7.1e-08 62.4 192 31.2
Duzib093G2220 Durio zibethinus HOM05D003792 ORTHO05D003195 7.1e-08 62.4 192 31.8
Nitab4.5_0000287g0270 Nicotiana tabacum HOM05D003792 ORTHO05D003195 9.3e-08 62.0 206 29.1
COL.COLO4_26514 Corchorus olitorius HOM05D003792 ORTHO05D003195 1.2e-07 61.6 192 30.2
Peaxi162Scf00252g00410 Petunia axillaris HOM05D003792 ORTHO05D003195 1.2e-07 61.6 192 28.1
GSVIVG01031734001 Vitis vinifera HOM05D003792 ORTHO05D003195 1.2e-07 61.6 305 25.2
BolC7t46450H Brassica oleracea HOM05D009953 ORTHO05D003195 1.6e-07 61.2 192 31.2
CsaV3_7G008550 Cucumis sativus L. HOM05D003792 ORTHO05D003195 1.6e-07 61.2 257 27.6
Gohir.D01G007300 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.6e-07 61.2 259 29.0
PGR031G0673 Punica granatum HOM05D003792 ORTHO05D003195 1.6e-07 61.2 234 29.5
Aqoxy6G01313 Aquilegia oxysepala HOM05D003792 ORTHO05D003195 2.7e-07 60.5 236 27.5
Manes.10G080100 Manihot esculenta HOM05D003792 ORTHO05D003195 2.7e-07 60.5 153 36.6
THA.LOC104822850 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 3.5e-07 60.1 209 30.6
BcaC06g31740 Brassica carinata HOM05D003792 ORTHO05D003195 4.6e-07 59.7 202 30.2
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 6.0e-07 59.3 204 28.9
A06p48190 Brassica napus HOM05D003792 ORTHO05D003195 6.0e-07 59.3 211 29.9
Haze_17521 Corylus avellana HOM05D000207 ORTHO05D000606 6.0e-07 59.3 235 29.4
AL8G18050 Arabidopsis lyrata HOM05D003792 ORTHO05D003195 7.8e-07 58.9 221 27.6
MSTRG.24332 Avicennia marina HOM05D003792 ORTHO05D003195 7.8e-07 58.9 239 27.6
Thhalv10003264m.g Eutrema salsugineum HOM05D003792 ORTHO05D003195 7.8e-07 58.9 198 28.8
arahy.Tifrunner.gnm1.ann1.ND8QY1 Arachis hypogaea HOM05D003792 ORTHO05D003195 2.3e-06 57.4 212 27.8
arahy.Tifrunner.gnm1.ann1.V1SQNE Arachis hypogaea HOM05D003792 ORTHO05D003195 2.3e-06 57.4 212 27.8
Gohir.A06G018700 Gossypium hirsutum HOM05D003792 ORTHO05D003195 2.3e-06 57.4 193 31.1
PGSC0003DMG402007970 Solanum tuberosum HOM05D003792 ORTHO05D003195 2.3e-06 57.4 195 29.7
AT5G42900 Arabidopsis thaliana HOM05D003792 ORTHO05D003195 3.0e-06 57.0 210 29.0
BraA03t15320Z Brassica rapa HOM05D009953 ORTHO05D003195 3.0e-06 57.0 193 28.5
Lj5C209G18 Lonicera japonica HOM05D003792 ORTHO05D003195 3.0e-06 57.0 185 29.2
Sopen04g032480 Solanum pennellii HOM05D003792 ORTHO05D003195 3.0e-06 57.0 195 32.3
Thecc.08G006700 Theobroma cacao HOM05D003792 ORTHO05D003195 3.0e-06 57.0 192 29.7
TWI36G0999 Tripterygium wilfordii HOM05D003792 ORTHO05D003195 3.0e-06 57.0 253 26.1
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 3.9e-06 56.6 199 29.1
Solyc04g078880.3 Solanum lycopersicum HOM05D003792 ORTHO05D003195 3.9e-06 56.6 195 30.8
TWI36G1706 Tripterygium wilfordii HOM05D003792 ORTHO05D003195 3.9e-06 56.6 239 26.4
QL02p004753 Quercus lobata HOM05D003792 ORTHO05D003195 5.1e-06 56.2 232 28.0
BcaC02g10794 Brassica carinata HOM05D003792 ORTHO05D003195 6.6e-06 55.8 202 29.2
DCAR_019451 Daucus carota HOM05D003792 ORTHO05D003195 6.6e-06 55.8 205 29.3
Lsat_1_v5_gn_4_125741 Lactuca sativa HOM05D003792 ORTHO05D003195 8.7e-06 55.5 198 26.8


User provided reference genes

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