Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.I3EVQT Arachis hypogaea HOM05D004699 ORTHO05D005668 3.0e-216 755.4 525 100.0
arahy.Tifrunner.gnm1.ann1.TH86UG Arachis hypogaea HOM05D004699 ORTHO05D005668 2.0e-127 460.3 288 80.6
arahy.Tifrunner.gnm1.ann1.32M4WS Arachis hypogaea HOM05D004699 ORTHO05D005668 5.8e-127 458.8 263 86.3
arahy.Tifrunner.gnm1.ann1.3U687E Arachis hypogaea HOM05D004699 ORTHO05D005668 9.8e-127 458.0 288 80.6
Lj5g0001210 Lotus japonicus HOM05D004699 ORTHO05D005668 2.3e-107 393.7 288 68.1
arahy.Tifrunner.gnm1.ann1.UD3ZER Arachis hypogaea HOM05D004699 ORTHO05D005668 2.5e-106 390.2 257 77.8
Lalb_Chr21g0305871 Lupinus albus HOM05D004699 ORTHO05D005668 7.3e-106 388.7 284 67.6
Glyma.20G177500 Glycine max HOM05D004699 ORTHO05D005668 3.6e-105 386.3 263 70.3
Medtr1g095910 Medicago truncatula HOM05D004699 ORTHO05D005668 1.1e-104 384.8 263 69.2
Ca_10595_v3 Cicer arietinum L. HOM05D004699 ORTHO05D005668 2.4e-104 383.6 288 65.3
Psat6g186040 Pisum sativum HOM05D004699 ORTHO05D005668 3.8e-102 376.3 288 62.8
Glyma.10G214100 Glycine max HOM05D004699 ORTHO05D005668 5.4e-101 372.5 288 63.5
VMungo0720G0718 Vigna mungo HOM05D004699 ORTHO05D005668 7.9e-100 368.6 288 61.8
Phvul.007G091600 Phaseolus vulgaris HOM05D004699 ORTHO05D005668 5.1e-99 365.9 288 61.8
Thecc.10G067900 Theobroma cacao HOM05D004699 ORTHO05D005668 5.1e-99 365.9 263 66.2
Lalb_Chr01g0010171 Lupinus albus HOM05D004699 ORTHO05D005668 9.6e-98 361.7 279 64.9
CANSAT56G2462 Cannabis sativa HOM05D004699 ORTHO05D005668 4.5e-95 352.8 263 62.7
CiPaw.15G145000 Carya illinoinensis HOM05D004699 ORTHO05D005668 2.9e-94 350.1 263 62.4
QL08p056836 Quercus lobata HOM05D004699 ORTHO05D005668 3.8e-94 349.7 263 62.0
Cpa.g.sc53.21 Carica papaya HOM05D004699 ORTHO05D005668 6.4e-94 349.0 266 63.5
Cc03_g16280 Coffea canephora HOM05D004699 ORTHO05D005668 2.4e-93 347.1 265 64.5
Gorai.013G025000 Gossypium raimondii HOM05D004699 ORTHO05D005668 2.4e-93 347.1 263 63.1
Gohir.D13G022200 Gossypium hirsutum HOM05D004699 ORTHO05D005668 3.2e-93 346.7 263 63.1
MD07G1179200 Malus domestica HOM05D004699 ORTHO05D005668 4.2e-93 346.3 263 61.2
TAR633G1364 Trochodendron aralioides HOM05D004699 ORTHO05D005668 7.1e-93 345.5 263 63.1
Duzib114G0670 Durio zibethinus HOM05D004699 ORTHO05D005668 1.6e-92 344.4 263 62.4
Manes.07G102100 Manihot esculenta HOM05D004699 ORTHO05D005668 2.1e-92 344.0 267 62.2
Sc09g0006780 Simmondsia chinensis HOM05D004699 ORTHO05D005668 2.7e-92 343.6 263 63.5
Gohir.A13G021600 Gossypium hirsutum HOM05D004699 ORTHO05D005668 7.9e-92 342.0 263 62.4
Haze_18894 Corylus avellana HOM05D004699 ORTHO05D005668 1.8e-91 340.9 276 60.1
MELO3C022239.2 Cucumis melo HOM05D004699 ORTHO05D005668 1.8e-91 340.9 263 62.4
Actinidia38250 Actinidia chinensis HOM05D004699 ORTHO05D005668 2.3e-91 340.5 265 61.5
ClCG06G002910 Citrullus lanatus HOM05D004699 ORTHO05D005668 2.3e-91 340.5 262 62.6
MD01G1131100 Malus domestica HOM05D004699 ORTHO05D005668 3.9e-91 339.7 263 60.5
Prupe.2G218300 Prunus persica HOM05D004699 ORTHO05D005668 6.7e-91 339.0 263 60.8
Sed0011372 Sechium edule HOM05D004699 ORTHO05D005668 6.7e-91 339.0 262 62.2
Actinidia03029 Actinidia chinensis HOM05D004699 ORTHO05D005668 1.1e-90 338.2 265 60.4
Ah.10g033030 Amaranthus hybridus HOM05D004699 ORTHO05D005668 1.5e-90 337.8 263 62.0
CsaV3_6G009040 Cucumis sativus L. HOM05D004699 ORTHO05D005668 1.5e-90 337.8 263 61.2
Potri.008G044100 Populus trichocarpa HOM05D004699 ORTHO05D005668 1.9e-90 337.4 263 62.0
PGR142G2805 Punica granatum HOM05D004699 ORTHO05D005668 1.9e-90 337.4 265 61.9
TWI63G1195 Tripterygium wilfordii HOM05D004699 ORTHO05D005668 3.3e-90 336.7 263 62.4
Dinv11807 Davidia involucrata HOM05D004699 ORTHO05D005668 4.3e-90 336.3 265 63.4
CSS0050516 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 5.6e-90 335.9 265 62.3
Migut.M00004 Erythranthe guttata HOM05D004699 ORTHO05D005668 1.3e-89 334.7 265 61.5
FvH4_7g20140 Fragaria vesca HOM05D004699 ORTHO05D005668 1.3e-89 334.7 264 60.6
FAN06G0847 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.3e-89 334.7 264 60.6
Nitab4.5_0005353g0020 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.3e-89 334.7 265 61.5
Potri.010G217400 Populus trichocarpa HOM05D004699 ORTHO05D005668 1.6e-89 334.3 262 61.8
Ciclev10032131m.g Citrus clementina HOM05D004699 ORTHO05D005668 3.7e-89 333.2 263 57.8
Eucgr.G02801 Eucalyptus grandis HOM05D004699 ORTHO05D005668 3.7e-89 333.2 263 61.6
Nitab4.5_0000219g0050 Nicotiana tabacum HOM05D004699 ORTHO05D005668 3.7e-89 333.2 265 61.5
FAN10G1203 Fragaria x ananassa HOM05D004699 ORTHO05D005668 8.1e-89 332.0 264 59.8
MSTRG.6667 Avicennia marina HOM05D004699 ORTHO05D005668 1.8e-88 330.9 265 60.8
RcHm_v2.0_Chr1g0364111 Rosa chinensis HOM05D004699 ORTHO05D005668 1.8e-88 330.9 263 58.9
PGSC0003DMG400002241 Solanum tuberosum HOM05D004699 ORTHO05D005668 3.1e-88 330.1 265 60.4
PGSC0003DMG400007657 Solanum tuberosum HOM05D004699 ORTHO05D005668 9.0e-88 328.6 267 61.8
AUR62043639 Chenopodium quinoa HOM05D004699 ORTHO05D005668 1.2e-87 328.2 262 61.8
Aqoxy2G00791 Aquilegia oxysepala HOM05D004699 ORTHO05D005668 2.0e-87 327.4 280 57.5
Nn2g10994 Nelumbo nucifera HOM05D004699 ORTHO05D005668 2.6e-87 327.0 280 57.9
Gorai.012G093600 Gossypium raimondii HOM05D004699 ORTHO05D005668 3.4e-87 326.6 263 59.7
Solyc12g017820.2 Solanum lycopersicum HOM05D004699 ORTHO05D005668 3.4e-87 326.6 265 60.4
ATR0661G308 Amborella trichopoda HOM05D004699 ORTHO05D005668 4.5e-87 326.2 263 59.7
AUR62020788 Chenopodium quinoa HOM05D004699 ORTHO05D005668 5.8e-87 325.9 265 61.5
CAN.G50.13 Capsicum annuum HOM05D004699 ORTHO05D005668 7.6e-87 325.5 265 61.1
Sopen08g006240 Solanum pennellii HOM05D004699 ORTHO05D005668 7.6e-87 325.5 267 60.7
Oeu061895.3 Olea europaea HOM05D004699 ORTHO05D005668 1.0e-86 325.1 288 57.3
CAN.G8.39 Capsicum annuum HOM05D004699 ORTHO05D005668 1.7e-86 324.3 265 60.0
CSS0042102 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 2.2e-86 323.9 267 60.7
Nitab4.5_0001070g0040 Nicotiana tabacum HOM05D004699 ORTHO05D005668 2.2e-86 323.9 267 61.0
SalBow8G2974 Salvia bowleyana HOM05D004699 ORTHO05D005668 2.2e-86 323.9 265 59.6
Atru.chr12.635 Acer truncatum HOM05D004699 ORTHO05D005668 3.8e-86 323.2 263 58.6
Solyc08g015990.4 Solanum lycopersicum HOM05D004699 ORTHO05D005668 4.9e-86 322.8 267 59.9
Gohir.A05G344400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.1e-85 321.6 268 57.8
TAR636G2780 Trochodendron aralioides HOM05D004699 ORTHO05D005668 1.4e-85 321.2 247 63.6
Sabra10G0168100 Salix brachista HOM05D004699 ORTHO05D005668 1.9e-85 320.9 263 60.1
Sopen12g008620 Solanum pennellii HOM05D004699 ORTHO05D005668 3.2e-85 320.1 272 58.8
Peaxi162Scf00057g00154 Petunia axillaris HOM05D004699 ORTHO05D005668 1.2e-84 318.2 265 60.0
Nitab4.5_0000348g0090 Nicotiana tabacum HOM05D004699 ORTHO05D005668 2.1e-84 317.4 268 59.7
CDE04G1653 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 1.3e-83 314.7 263 57.4
PSO765G0019 Papaver somniferum HOM05D004699 ORTHO05D005668 3.0e-83 313.5 282 55.7
Cfa019630 Carpinus fangiana HOM05D004699 ORTHO05D005668 1.1e-82 311.6 233 63.5
ECA247G2135 Erigeron canadensis HOM05D004699 ORTHO05D005668 4.3e-82 309.7 265 58.9
PSO349G0185 Papaver somniferum HOM05D004699 ORTHO05D005668 2.1e-81 307.4 282 54.6
Sabra08G0030500 Salix brachista HOM05D004699 ORTHO05D005668 2.8e-81 307.0 310 51.9
HanXRQChr07g0195941 Helianthus annuus HOM05D004699 ORTHO05D005668 6.3e-81 305.8 265 58.9
DCAR_006464 Daucus carota HOM05D004699 ORTHO05D005668 1.8e-80 304.3 264 56.8
THA.LOC104799349 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 3.1e-80 303.5 261 58.2
CDE07G1914 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 5.3e-80 302.8 259 57.5
HPP92_021827 Vanilla planifolia HOM05D004699 ORTHO05D005668 2.0e-79 300.8 259 57.5
Lsat_1_v5_gn_2_110160 Lactuca sativa HOM05D004699 ORTHO05D005668 2.6e-79 300.4 264 58.7
HanXRQChr14g0453411 Helianthus annuus HOM05D004699 ORTHO05D005668 4.5e-79 299.7 266 57.5
Aa31LG1G18760 Aethionema arabicum HOM05D004699 ORTHO05D005668 8.5e-78 295.4 260 55.8
BraA06t25945Z Brassica rapa HOM05D004699 ORTHO05D005668 1.1e-77 295.0 255 55.7
A06p29940 Brassica napus HOM05D004699 ORTHO05D005668 2.1e-76 290.8 260 53.8
THA.LOC104827325 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 3.6e-76 290.0 260 53.8
BcaC01g02566 Brassica carinata HOM05D004699 ORTHO05D005668 7.9e-76 288.9 260 53.5
BolC3t18594H Brassica oleracea HOM05D004699 ORTHO05D005668 7.9e-76 288.9 260 53.5
C03p63420 Brassica napus HOM05D004699 ORTHO05D005668 1.0e-75 288.5 255 54.5
AT5G63220 Arabidopsis thaliana HOM05D004699 ORTHO05D005668 6.7e-75 285.8 260 53.1
Dinv31344 Davidia involucrata HOM05D004699 ORTHO05D005668 6.7e-75 285.8 224 63.8
Thhalv10004594m.g Eutrema salsugineum HOM05D004699 ORTHO05D005668 6.7e-75 285.8 260 52.3
Carub.0008s2397 Capsella rubella HOM05D004699 ORTHO05D005668 1.9e-74 284.3 260 52.3
CARHR277070 Cardamine hirsuta HOM05D004699 ORTHO05D005668 2.5e-74 283.9 260 51.9
Peaxi162Scf01205g00165 Petunia axillaris HOM05D004699 ORTHO05D005668 3.3e-74 283.5 229 60.3
AL8G40300 Arabidopsis lyrata HOM05D004699 ORTHO05D005668 4.3e-74 283.1 260 52.7
TPR.G1830 Trifolium pratense HOM05D004699 ORTHO05D005668 9.7e-74 282.0 216 63.0
Duzib106G1564 Durio zibethinus HOM05D004699 ORTHO05D005668 1.3e-73 281.6 261 55.6
Sp2g26340 Schrenkiella parvula HOM05D004699 ORTHO05D005668 3.7e-73 280.0 260 52.3
BolC9t53837H Brassica oleracea HOM05D004699 ORTHO05D005668 1.4e-72 278.1 260 51.5
BraA09t36470Z Brassica rapa HOM05D004699 ORTHO05D005668 1.2e-71 275.0 260 51.2
Hund19333 Selenicereus undatus HOM05D004699 ORTHO05D005668 1.5e-71 274.6 314 47.8
A09p08190 Brassica napus HOM05D004699 ORTHO05D005668 2.0e-71 274.2 254 52.0
C09p09240 Brassica napus HOM05D004699 ORTHO05D005668 2.6e-71 273.9 260 51.2
Zm00001eb123410 Zea mays HOM05D004699 ORTHO05D005668 2.6e-71 273.9 246 56.5
Gohir.D04G082900 Gossypium hirsutum HOM05D004699 ORTHO05D005668 3.0e-67 260.4 263 51.3
vmacro07089 Vaccinium macrocarpon HOM05D004699 ORTHO05D005668 1.7e-65 254.6 356 43.0
Mapoly0019s0063 Marchantia polymorpha HOM05D004699 ORTHO05D005668 1.8e-64 251.1 262 49.2
FAN01G1284 Fragaria x ananassa HOM05D004699 ORTHO05D005668 2.6e-63 247.3 263 50.2
FAN03G0794 Fragaria x ananassa HOM05D004699 ORTHO05D005668 4.5e-63 246.5 263 49.0
SGA_v2.0_scaffold277G46671 Striga asiatica HOM05D004699 ORTHO05D000105 1.1e-61 241.9 483 34.2
Hund22480 Selenicereus undatus HOM05D004699 ORTHO05D005668 9.4e-61 238.8 227 55.5
Lj8C95T3 Lonicera japonica HOM05D004699 ORTHO05D005668 3.6e-60 236.9 203 56.7
Pp3c7_7450 Physcomitrium patens HOM05D004699 ORTHO05D005668 3.9e-59 233.4 267 44.2
CDE07G0668 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 5.2e-59 233.0 281 45.6
Pp3c11_21230 Physcomitrium patens HOM05D004699 ORTHO05D005668 2.2e-57 227.6 267 43.8
CSS0008535 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 1.6e-55 221.5 174 63.2
Zm00001eb336250 Zea mays HOM05D004699 ORTHO05D005668 3.8e-54 216.9 194 57.7
SMO116G0436 Selaginella moellendorffii HOM05D004699 ORTHO05D005668 3.6e-52 210.3 264 41.3
Rhsim03G0122800 Rhododendron simsii HOM05D004699 ORTHO05D005668 2.2e-46 191.0 149 63.1
GSVIVG01016338001 Vitis vinifera HOM05D004699 ORTHO05D005668 2.5e-45 187.6 625 25.9
CBR_g49532 Chara braunii HOM05D004699 ORTHO05D005668 7.5e-42 176.0 268 36.2
AagrBONN_evm.TU.Sc2ySwM_344.3470 Anthoceros agrestis HOM05D004699 ORTHO05D005668 2.4e-32 144.4 178 39.3
Gorai.009G338200 Gossypium raimondii HOM05D004699 ORTHO05D005668 8.3e-25 119.4 93 57.0
Gohir.D05G316201 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.1e-24 119.0 93 57.0
Hma1.2p1_0904F.1_g235240 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 1.3e-22 112.1 73 65.8
SEGI_20090 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 1.9e-16 91.7 80 57.5
Hma1.2p1_0904F.1_g235250 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 1.2e-15 89.0 70 61.4
arahy.Tifrunner.gnm1.ann1.V5M9Y5 Arachis hypogaea HOM05D005287 ORTHO05D006893 4.6e-15 87.0 220 44.1
Cre06.g282950 Chlamydomonas reinhardtii HOM05D004699 ORTHO05D005668 2.5e-13 81.3 244 27.0
Dinv04679 Davidia involucrata HOM05D004699 ORTHO05D005668 2.5e-13 81.3 66 59.1
Oeu050294.2 Olea europaea HOM05D004699 ORTHO05D005668 9.5e-13 79.3 60 63.3
RcHm_v2.0_Chr2g0153331 Rosa chinensis HOM05D004699 ORTHO05D005668 2.1e-12 78.2 60 56.7
RcHm_v2.0_Chr5g0038701 Rosa chinensis HOM05D004699 ORTHO05D005668 2.1e-12 78.2 60 56.7
arahy.Tifrunner.gnm1.ann1.ZE45ED Arachis hypogaea HOM05D047585 ORTHO05D038821 3.6e-12 77.4 41 85.4
VMungo0251G1192 Vigna mungo HOM05D017878 ORTHO05D018225 3.7e-09 67.4 43 72.1
arahy.Tifrunner.gnm1.ann1.4R3XMY Arachis hypogaea HOM05D005287 ORTHO05D006893 1.4e-08 65.5 94 41.5
arahy.Tifrunner.gnm1.ann1.JQA4UT Arachis hypogaea HOM05D005287 ORTHO05D006893 1.4e-08 65.5 54 63.0
arahy.Tifrunner.gnm1.ann1.NBNI0E Arachis hypogaea HOM05D005287 ORTHO05D006893 1.9e-08 65.1 70 55.7
arahy.Tifrunner.gnm1.ann1.TR9913 Arachis hypogaea HOM05D005287 ORTHO05D006893 3.2e-08 64.3 83 45.8
arahy.Tifrunner.gnm1.ann1.EI05U6 Arachis hypogaea HOM05D005287 ORTHO05D006893 1.2e-07 62.4 54 61.1
arahy.Tifrunner.gnm1.ann1.PUP4D7 Arachis hypogaea HOM05D005287 ORTHO05D006893 1.2e-07 62.4 33 93.9
arahy.Tifrunner.gnm1.ann1.C25YBK Arachis hypogaea HOM05D005287 ORTHO05D006893 2.7e-07 61.2 70 52.9
arahy.Tifrunner.gnm1.ann1.SZH9K7 Arachis hypogaea HOM05D005287 ORTHO05D006893 2.7e-07 61.2 70 52.9
arahy.Tifrunner.gnm1.ann1.HZQS8U Arachis hypogaea HOM05D005287 ORTHO05D006893 6.0e-07 60.1 52 61.5
arahy.Tifrunner.gnm1.ann1.J60LCZ Arachis hypogaea HOM05D005287 ORTHO05D006893 6.0e-07 60.1 70 51.4


User provided reference genes

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