Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.I2HDTW Arachis hypogaea HOM05D007890 ORTHO05D009945 6.5e-73 277.3 144 100.0
arahy.Tifrunner.gnm1.ann1.SWS7SX Arachis hypogaea HOM05D007890 ORTHO05D009945 7.2e-72 273.9 144 98.6
Glyma.08G336100 Glycine max HOM05D007890 ORTHO05D009945 5.8e-37 157.9 147 62.6
Lalb_Chr15g0082521 Lupinus albus HOM05D007890 ORTHO05D009945 9.9e-37 157.1 147 60.5
Lj6g0024098 Lotus japonicus HOM05D007890 ORTHO05D009945 3.5e-34 148.7 158 55.7
TPR.G14719 Trifolium pratense HOM05D005961 ORTHO05D007391 1.0e-33 147.1 146 55.5
Phvul.006G062000 Phaseolus vulgaris HOM05D007890 ORTHO05D009945 5.1e-33 144.8 153 57.5
Medtr3g061480 Medicago truncatula HOM05D007890 ORTHO05D009945 7.3e-32 141.0 143 56.6
VMungo0540G1907 Vigna mungo HOM05D007890 ORTHO05D009945 6.2e-31 137.9 153 56.9
Psat5g163960 Pisum sativum HOM05D007890 ORTHO05D009945 4.9e-28 128.3 141 52.5
Gohir.D05G072500 Gossypium hirsutum HOM05D007890 ORTHO05D009945 1.0e-25 120.6 116 53.4
Gorai.009G073500 Gossypium raimondii HOM05D007890 ORTHO05D009945 1.0e-25 120.6 116 53.4
Gohir.A05G069600 Gossypium hirsutum HOM05D007890 ORTHO05D009945 3.0e-25 119.0 116 52.6
QL01p004625 Quercus lobata HOM05D007890 ORTHO05D009945 4.3e-24 115.2 155 47.7
Cfa009778 Carpinus fangiana HOM05D007890 ORTHO05D009945 1.8e-22 109.8 146 45.2
Potri.001G257400 Populus trichocarpa HOM05D007890 ORTHO05D009945 5.2e-22 108.2 98 55.1
Thecc.09G234600 Theobroma cacao HOM05D007890 ORTHO05D009945 9.0e-22 107.5 101 54.5
Duzib170G0138 Durio zibethinus HOM05D007890 ORTHO05D009945 1.5e-21 106.7 120 47.5
Eucgr.B03690 Eucalyptus grandis HOM05D007890 ORTHO05D009945 1.5e-21 106.7 101 55.4
Ciclev10016956m.g Citrus clementina HOM05D007890 ORTHO05D009945 1.3e-20 103.6 122 45.1
MSTRG.17595 Avicennia marina HOM05D007890 ORTHO05D009945 2.2e-20 102.8 96 58.3
GSVIVG01025250001 Vitis vinifera HOM05D007890 ORTHO05D009945 8.4e-20 100.9 139 45.3
Manes.13G093240 Manihot esculenta HOM05D007890 ORTHO05D009945 1.9e-19 99.8 122 45.9
TWI32G0791 Tripterygium wilfordii HOM05D007890 ORTHO05D009945 1.9e-19 99.8 98 56.1
CiPaw.13G159700 Carya illinoinensis HOM05D007890 ORTHO05D009945 2.4e-19 99.4 150 44.0
ClCG02G023170 Citrullus lanatus HOM05D007890 ORTHO05D009945 9.3e-19 97.4 97 54.6
MELO3C014589.2 Cucumis melo HOM05D007890 ORTHO05D009945 6.0e-18 94.7 102 52.9
CsaV3_6G039340 Cucumis sativus L. HOM05D007890 ORTHO05D009945 6.0e-18 94.7 101 52.5
PGSC0003DMG400033336 Solanum tuberosum HOM05D007890 ORTHO05D009945 1.0e-17 94.0 97 53.6
Sed0013757 Sechium edule HOM05D007890 ORTHO05D009945 1.3e-17 93.6 96 52.1
Lj1P329T66 Lonicera japonica HOM05D007890 ORTHO05D009945 1.7e-17 93.2 96 54.2
Nitab4.5_0002741g0090 Nicotiana tabacum HOM05D007890 ORTHO05D009945 1.7e-17 93.2 97 51.5
Peaxi162Scf00004g02526 Petunia axillaris HOM05D007890 ORTHO05D009945 1.7e-17 93.2 113 48.7
Solyc11g065680.1 Solanum lycopersicum HOM05D007890 ORTHO05D009945 1.7e-17 93.2 96 54.2
Sopen11g025420 Solanum pennellii HOM05D007890 ORTHO05D009945 1.7e-17 93.2 96 54.2
Sabra16G0157400 Salix brachista HOM05D007890 ORTHO05D009945 3.0e-17 92.4 135 41.5
Dinv36254 Davidia involucrata HOM05D007890 ORTHO05D009945 5.1e-17 91.7 98 52.0
Atru.chr3.2706 Acer truncatum HOM05D007890 ORTHO05D009945 1.5e-16 90.1 119 41.2
MD11G1192200 Malus domestica HOM05D007890 ORTHO05D009945 2.5e-16 89.4 104 47.1
SalBow5G2971 Salvia bowleyana HOM05D007890 ORTHO05D009945 9.6e-16 87.4 117 42.7
MD03G1174000 Malus domestica HOM05D007890 ORTHO05D009945 2.1e-15 86.3 101 46.5
TAR633G1231 Trochodendron aralioides HOM05D007890 ORTHO05D009945 2.1e-15 86.3 111 48.6
Oeu025872.1 Olea europaea HOM05D007890 ORTHO05D009945 4.8e-15 85.1 110 46.4
vmacro04152 Vaccinium macrocarpon HOM05D007890 ORTHO05D009945 1.1e-14 84.0 92 50.0
THA.LOC104801952 Tarenaya hassleriana HOM05D007890 ORTHO05D009945 1.8e-14 83.2 98 49.0
RcHm_v2.0_Chr5g0052301 Rosa chinensis HOM05D007890 ORTHO05D009945 2.4e-14 82.8 99 47.5
Actinidia06910 Actinidia chinensis HOM05D007890 ORTHO05D009945 4.0e-14 82.0 115 44.3
Hma1.2p1_0606F.1_g188050 Hydrangea macrophylla HOM05D007890 ORTHO05D009945 5.3e-14 81.6 102 47.1
Rhsim13G0220700 Rhododendron simsii HOM05D007890 ORTHO05D009945 1.2e-13 80.5 92 47.8
EL10Ac4g10243 Beta vulgaris HOM05D007890 ORTHO05D009945 3.4e-13 79.0 96 47.9
Migut.N02322 Erythranthe guttata HOM05D007890 ORTHO05D009945 7.6e-13 77.8 97 44.3
Aqoxy2G00189 Aquilegia oxysepala HOM05D007890 ORTHO05D009945 2.2e-12 76.3 126 42.1
FvH4_3g28750 Fragaria vesca HOM05D007890 ORTHO05D009945 2.2e-12 76.3 125 40.8
FAN11G2622 Fragaria x ananassa HOM05D007890 ORTHO05D009945 2.2e-12 76.3 125 40.8
FAN21G3432 Fragaria x ananassa HOM05D007890 ORTHO05D009945 2.2e-12 76.3 131 40.5
Ah.06g194130 Amaranthus hybridus HOM05D007890 ORTHO05D009945 2.9e-12 75.9 96 45.8
FAN16G0819 Fragaria x ananassa HOM05D007890 ORTHO05D009945 3.8e-12 75.5 99 43.4
AL5G10980 Arabidopsis lyrata HOM05D007890 ORTHO05D009945 2.4e-11 72.8 124 41.9
CARHR144430 Cardamine hirsuta HOM05D007890 ORTHO05D009945 3.2e-11 72.4 114 42.1
Duzib170G0703 Durio zibethinus HOM05D007890 ORTHO05D009945 9.3e-11 70.9 76 50.0
BcaC06g31267 Brassica carinata HOM05D007890 ORTHO05D009945 3.5e-10 68.9 126 39.7
BcaC06g34102 Brassica carinata HOM05D007890 ORTHO05D009945 3.5e-10 68.9 130 40.8
C07p32670 Brassica napus HOM05D001297 ORTHO05D001135 3.5e-10 68.9 130 40.8
BolC7t43788H Brassica oleracea HOM05D001297 ORTHO05D001135 4.6e-10 68.6 131 40.5
Aa31LG2G8040 Aethionema arabicum HOM05D007890 ORTHO05D009945 7.9e-10 67.8 97 44.3
HanXRQChr08g0209341 Helianthus annuus HOM05D007890 ORTHO05D009945 7.9e-10 67.8 109 38.5
Thhalv10005015m.g Eutrema salsugineum HOM05D007890 ORTHO05D009945 1.0e-09 67.4 95 46.3
A06p43960 Brassica napus HOM05D001297 ORTHO05D001135 1.8e-09 66.6 95 45.3
BraA06t27271Z Brassica rapa HOM05D001297 ORTHO05D001135 1.8e-09 66.6 95 45.3
AT2G01870 Arabidopsis thaliana HOM05D007890 ORTHO05D009945 2.3e-09 66.2 118 41.5
Carub.0005s0083 Capsella rubella HOM05D007890 ORTHO05D009945 3.0e-09 65.9 102 44.1
Sp2g13290 Schrenkiella parvula HOM05D007890 ORTHO05D009945 3.9e-09 65.5 106 45.3
PGR102G2636 Punica granatum HOM05D007890 ORTHO05D009945 1.1e-08 63.9 91 40.7
unitig_22.g5692 Utricularia gibba HOM05D007890 ORTHO05D009945 1.5e-08 63.5 96 38.5
Cpa.g.sc84.47 Carica papaya HOM05D007890 ORTHO05D009945 1.9e-08 63.2 124 34.7
ECA233G3563 Erigeron canadensis HOM05D000013 ORTHO05D004590 2.5e-08 62.8 94 45.7
Prupe.4G250100 Prunus persica HOM05D007890 ORTHO05D009945 2.5e-08 62.8 96 37.5
Lsat_1_v5_gn_2_29200 Lactuca sativa HOM05D007890 ORTHO05D009945 7.4e-08 61.2 95 44.2
PSO423G0105 Papaver somniferum HOM05D007890 ORTHO05D009945 6.9e-06 54.7 145 33.8


User provided reference genes

Program Settings