Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.EWF75K Arachis hypogaea HOM05D006988 ORTHO05D008731 5.2e-122 441.0 218 100.0
arahy.Tifrunner.gnm1.ann1.I2GGUW Arachis hypogaea HOM05D006988 ORTHO05D008731 5.2e-122 441.0 218 100.0
Phvul.008G157000 Phaseolus vulgaris HOM05D006988 ORTHO05D008731 8.9e-98 360.5 214 83.6
Glyma.01G076100 Glycine max HOM05D006988 ORTHO05D008731 3.2e-95 352.1 217 80.6
VMungo1383G3408 Vigna mungo HOM05D006988 ORTHO05D008731 1.6e-94 349.7 218 81.2
Ca_27093_v3 Cicer arietinum L. HOM05D006988 ORTHO05D008731 7.8e-94 347.4 220 79.1
Lj1g0025695 Lotus japonicus HOM05D006988 ORTHO05D008731 1.0e-93 347.1 220 79.5
Glyma.11G164037 Glycine max HOM05D006988 ORTHO05D008731 4.3e-92 341.7 214 78.0
CiPaw.13G030900 Carya illinoinensis HOM05D006988 ORTHO05D008731 7.5e-89 330.9 214 75.7
Potri.014G058400 Populus trichocarpa HOM05D006988 ORTHO05D008731 1.9e-87 326.2 213 74.2
Haze_02728 Corylus avellana HOM05D006988 ORTHO05D008731 5.4e-87 324.7 215 75.3
Sabra14G0042600 Salix brachista HOM05D006988 ORTHO05D008731 6.0e-86 321.2 217 72.8
Manes.01G270400 Manihot esculenta HOM05D006988 ORTHO05D008731 1.9e-84 316.2 210 74.8
Thecc.01G386200 Theobroma cacao HOM05D006988 ORTHO05D008731 2.5e-84 315.8 214 75.2
Duzib133G0505 Durio zibethinus HOM05D006988 ORTHO05D008731 3.3e-84 315.5 218 74.8
FAN03G1007 Fragaria x ananassa HOM05D006988 ORTHO05D008731 3.3e-84 315.5 218 71.6
COL.COLO4_12466 Corchorus olitorius HOM05D006988 ORTHO05D008731 8.1e-83 310.8 227 70.5
FvH4_7g10720 Fragaria vesca HOM05D006988 ORTHO05D008731 1.1e-82 310.5 211 73.0
Gohir.D07G153600 Gossypium hirsutum HOM05D006988 ORTHO05D008731 1.1e-82 310.5 218 71.1
Gorai.001G175700 Gossypium raimondii HOM05D006988 ORTHO05D008731 1.4e-82 310.1 218 70.6
FAN06G3033 Fragaria x ananassa HOM05D006988 ORTHO05D008731 4.0e-82 308.5 188 78.2
QL04p035766 Quercus lobata HOM05D006988 ORTHO05D008731 4.0e-82 308.5 216 72.7
THA.LOC104814078 Tarenaya hassleriana HOM05D006988 ORTHO05D008731 5.2e-82 308.1 188 78.7
CsaV3_6G009120 Cucumis sativus L. HOM05D006988 ORTHO05D008731 8.9e-82 307.4 219 71.2
MELO3C021141.2 Cucumis melo HOM05D006988 ORTHO05D008731 1.2e-81 307.0 219 70.3
Gohir.A07G147500 Gossypium hirsutum HOM05D006988 ORTHO05D008731 1.2e-81 307.0 218 70.6
FAN06G2548 Fragaria x ananassa HOM05D006988 ORTHO05D008731 1.5e-81 306.6 218 70.6
Medtr7g444820 Medicago truncatula HOM05D006988 ORTHO05D008731 1.7e-80 303.1 216 71.3
ClCG06G003000 Citrullus lanatus HOM05D006988 ORTHO05D008731 2.2e-80 302.8 219 68.9
Atru.chr5.214 Acer truncatum HOM05D006988 ORTHO05D008731 4.9e-80 301.6 189 77.2
Sed0016586 Sechium edule HOM05D006988 ORTHO05D008731 8.4e-80 300.8 218 68.8
CARHR248070 Cardamine hirsuta HOM05D006988 ORTHO05D008731 1.4e-79 300.1 188 76.6
Prupe.2G135300 Prunus persica HOM05D006988 ORTHO05D008731 1.9e-79 299.7 218 69.3
MD07G1111900 Malus domestica HOM05D006988 ORTHO05D008731 5.4e-79 298.1 195 74.9
Dinv43657 Davidia involucrata HOM05D006988 ORTHO05D008731 7.1e-79 297.7 223 68.6
CANSAT01G0747 Cannabis sativa HOM05D006988 ORTHO05D008731 3.5e-78 295.4 220 70.0
Cc02_g24580 Coffea canephora HOM05D006988 ORTHO05D008731 1.0e-77 293.9 215 67.4
C09p00070 Brassica napus HOM05D006988 ORTHO05D008731 3.0e-77 292.4 178 78.7
BraA09t35681Z Brassica rapa HOM05D006988 ORTHO05D008731 3.0e-77 292.4 178 78.7
CSS0011747 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 6.6e-77 291.2 222 68.9
BcaB01g02207 Brassica carinata HOM05D006988 ORTHO05D008731 8.6e-77 290.8 202 72.8
Carub.0006s3719 Capsella rubella HOM05D006988 ORTHO05D008731 8.6e-77 290.8 188 73.4
AT4G00030 Arabidopsis thaliana HOM05D006988 ORTHO05D008731 1.1e-76 290.4 187 72.7
Sp6g00080 Schrenkiella parvula HOM05D006988 ORTHO05D008731 1.5e-76 290.0 192 75.5
CSS0001978 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 1.9e-76 289.7 210 70.5
BcaC04g24207 Brassica carinata HOM05D006988 ORTHO05D008731 2.5e-76 289.3 175 79.4
BolC9t52942H Brassica oleracea HOM05D006988 ORTHO05D008731 2.5e-76 289.3 175 79.4
Lj9A563T51 Lonicera japonica HOM05D006988 ORTHO05D008731 3.3e-76 288.9 195 73.3
PGSC0003DMG400011763 Solanum tuberosum HOM05D006988 ORTHO05D008731 4.3e-76 288.5 202 70.3
Aa31LG5G100 Aethionema arabicum HOM05D006988 ORTHO05D008731 7.3e-76 287.7 230 63.9
AL6G53480 Arabidopsis lyrata HOM05D006988 ORTHO05D008731 1.2e-75 287.0 188 72.3
Solyc10g018590.2 Solanum lycopersicum HOM05D006988 ORTHO05D008731 1.2e-75 287.0 202 70.3
Rhsim07G0032500 Rhododendron simsii HOM05D006988 ORTHO05D008731 4.7e-75 285.0 207 70.0
Sopen10g008330 Solanum pennellii HOM05D006988 ORTHO05D008731 4.7e-75 285.0 201 70.1
DCAR_031865 Daucus carota HOM05D006988 ORTHO05D008731 6.2e-75 284.6 219 65.8
SalBow5G4855 Salvia bowleyana HOM05D006988 ORTHO05D008731 1.8e-74 283.1 224 65.2
AUR62004148 Chenopodium quinoa HOM05D006988 ORTHO05D008731 3.1e-74 282.3 223 66.4
Migut.B01575 Erythranthe guttata HOM05D006988 ORTHO05D008731 3.1e-74 282.3 202 67.3
AUR62013709 Chenopodium quinoa HOM05D006988 ORTHO05D008731 4.0e-74 282.0 223 66.4
Lsat_1_v5_gn_7_10320 Lactuca sativa HOM05D006988 ORTHO05D008731 4.0e-74 282.0 224 65.6
Peaxi162Scf00350g00014 Petunia axillaris HOM05D006988 ORTHO05D008731 4.0e-74 282.0 225 65.8
Nitab4.5_0000882g0050 Nicotiana tabacum HOM05D006988 ORTHO05D008731 8.9e-74 280.8 217 65.4
TAR636G1375 Trochodendron aralioides HOM05D006988 ORTHO05D008731 2.0e-73 279.6 212 63.7
CAN.G160.69 Capsicum annuum HOM05D006988 ORTHO05D008731 4.4e-73 278.5 209 66.0
EL10Ac1g00818 Beta vulgaris HOM05D006988 ORTHO05D008731 5.8e-73 278.1 189 71.4
Nn6g33931 Nelumbo nucifera HOM05D006988 ORTHO05D008731 9.9e-73 277.3 213 64.8
Hma1.2p1_0341F.1_g130300 Hydrangea macrophylla HOM05D006988 ORTHO05D008731 1.7e-72 276.6 187 71.7
MBI04_g09512_MAGBIO Magnolia biondii HOM05D006988 ORTHO05D008731 8.4e-72 274.2 224 62.9
Hund17063 Selenicereus undatus HOM05D006988 ORTHO05D008731 1.1e-71 273.9 211 66.4
ECA236G3211 Erigeron canadensis HOM05D006988 ORTHO05D008731 4.2e-71 271.9 193 69.4
COL.COLO4_37993 Corchorus olitorius HOM05D006988 ORTHO05D008731 5.4e-71 271.6 222 64.9
SEGI_39512 Sequoiadendron giganteum HOM05D006988 ORTHO05D008731 2.1e-70 269.6 180 70.6
SGA_v2.0_scaffold153G36954 Striga asiatica HOM05D006988 ORTHO05D008731 1.7e-69 266.5 249 57.8
ATR0317G076 Amborella trichopoda HOM05D006988 ORTHO05D008731 2.3e-69 266.2 216 61.1
Aqoxy7G00790 Aquilegia oxysepala HOM05D006988 ORTHO05D008731 3.9e-69 265.4 212 62.3
Nitab4.5_0001501g0030 Nicotiana tabacum HOM05D006988 ORTHO05D008731 3.9e-69 265.4 194 67.5
RcHm_v2.0_Chr1g0348671 Rosa chinensis HOM05D006988 ORTHO05D008731 5.1e-69 265.0 186 71.0
HanXRQChr06g0168881 Helianthus annuus HOM05D006988 ORTHO05D008731 1.1e-68 263.8 200 66.0
TPR.G39083 Trifolium pratense HOM05D006988 ORTHO05D008731 8.1e-67 257.7 144 84.0
FAN01G2452 Fragaria x ananassa HOM05D006988 ORTHO05D008731 2.4e-66 256.1 184 70.1
PSO170G6265 Papaver somniferum HOM05D006988 ORTHO05D008731 7.6e-65 251.1 177 68.4
Eucgr.D02502 Eucalyptus grandis HOM05D006988 ORTHO05D008731 3.8e-64 248.8 163 76.7
TWI59G0585 Tripterygium wilfordii HOM05D006988 ORTHO05D008731 6.4e-64 248.1 215 62.3
Ciclev10022767m.g Citrus clementina HOM05D006988 ORTHO05D008731 8.4e-64 247.7 141 82.3
Os04g0551700 Oryza sativa ssp. japonica HOM05D006988 ORTHO05D008731 4.2e-63 245.4 173 68.2
GSVIVG01018209001 Vitis vinifera HOM05D006988 ORTHO05D008731 7.1e-63 244.6 141 82.3
Cpa.g.sc620.2 Carica papaya HOM05D006988 ORTHO05D008731 9.3e-63 244.2 181 69.1
Zm00001eb257570 Zea mays HOM05D006988 ORTHO05D008731 3.9e-61 238.8 211 57.8
SMO367G0814 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 9.6e-60 234.2 173 61.8
SMO367G0459 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 4.8e-59 231.9 173 61.3
Mapoly0004s0296 Marchantia polymorpha HOM05D006988 ORTHO05D008731 1.1e-58 230.7 171 63.7
Pp3c14_7270 Physcomitrium patens HOM05D006988 ORTHO05D008731 1.2e-57 227.3 182 60.4
MSTRG.20719 Avicennia marina HOM05D006988 ORTHO05D008731 2.0e-57 226.5 188 65.4
Psat3g157120 Pisum sativum HOM05D006988 ORTHO05D008731 4.9e-56 221.9 166 69.3
Ah.16g110010 Amaranthus hybridus HOM05D006988 ORTHO05D008731 1.9e-55 219.9 151 68.9
Sc23g0003890 Simmondsia chinensis HOM05D006988 ORTHO05D008731 7.1e-55 218.0 164 63.4
Thhalv10028565m.g Eutrema salsugineum HOM05D000447 ORTHO05D000315 1.6e-46 190.3 133 75.2
vmacro13459 Vaccinium macrocarpon HOM05D006988 ORTHO05D008731 2.5e-44 183.0 164 64.6
SMO367G0117 Selaginella moellendorffii HOM05D012767 ORTHO05D008731 1.4e-42 177.2 183 50.8
Cre14.g618050 Chlamydomonas reinhardtii HOM05D006988 ORTHO05D008731 2.9e-40 169.5 180 50.0
C03p91270 Brassica napus HOM05D006988 ORTHO05D008731 1.4e-39 167.2 123 65.9
BcaC03g13893 Brassica carinata HOM05D006988 ORTHO05D008731 1.9e-39 166.8 218 48.6
AagrBONN_evm.TU.Sc2ySwM_362.1347 Anthoceros agrestis HOM05D006988 ORTHO05D008731 3.3e-36 156.0 133 56.4
PRCOL_00005443 Prasinoderma coloniale HOM05D006988 ORTHO05D008731 2.8e-35 152.9 231 40.7
C02p10970 Brassica napus HOM05D006988 ORTHO05D008731 1.1e-34 151.0 85 78.8
BolC2t07167H Brassica oleracea HOM05D006988 ORTHO05D008731 3.1e-34 149.4 85 77.6
BcaC01g03084 Brassica carinata HOM05D006988 ORTHO05D008731 4.6e-30 135.6 168 45.8
MCO12G266 Micromonas commoda HOM05D006988 ORTHO05D008731 3.4e-25 119.4 177 42.4
Lalb_Chr19g0127481 Lupinus albus HOM05D006988 ORTHO05D008731 2.9e-24 116.3 55 92.7
Dinv19490 Davidia involucrata HOM05D006985 ORTHO05D008749 3.2e-23 112.8 91 65.9
A09p00790 Brassica napus HOM05D006988 ORTHO05D008731 2.6e-20 103.2 96 59.4
unitig_26.g9723 Utricularia gibba HOM05D000502 ORTHO05D000356 4.4e-20 102.4 95 55.8
Lalb_Chr19g0127491 Lupinus albus HOM05D006988 ORTHO05D008731 9.1e-18 94.7 86 59.3
Actinidia12175 Actinidia chinensis HOM05D006988 ORTHO05D008731 5.9e-17 92.0 82 54.9
BolC3t17906H Brassica oleracea HOM05D001199 ORTHO05D001013 1.4e-13 80.9 81 53.1
C03p56160 Brassica napus HOM05D001199 ORTHO05D001013 6.7e-13 78.6 83 53.0
Dinv13821 Davidia involucrata HOM05D006988 ORTHO05D008731 9.7e-12 74.7 68 60.3
Pp3c3_12020 Physcomitrium patens HOM05D005663 ORTHO05D007258 5.3e-10 68.9 166 27.7
Mapoly0058s0022 Marchantia polymorpha HOM05D005663 ORTHO05D007258 2.7e-09 66.6 194 28.4
GSVIVG01026586001 Vitis vinifera HOM05D005663 ORTHO05D007258 5.9e-09 65.5 141 27.7
Actinidia22773 Actinidia chinensis HOM05D006988 ORTHO05D008731 2.2e-08 63.5 34 76.5
Cre03.g188650 Chlamydomonas reinhardtii HOM05D003483 ORTHO05D004101 3.8e-08 62.8 174 28.7
Cc07_g17370 Coffea canephora HOM05D005663 ORTHO05D007258 1.1e-07 61.2 141 28.4
PRCOL_00002581 Prasinoderma coloniale HOM05D005663 ORTHO05D002254 1.5e-07 60.8 201 27.9
Solyc11g005340.3 Solanum lycopersicum HOM05D005663 ORTHO05D007258 1.9e-07 60.5 142 26.8
QL06p051868 Quercus lobata HOM05D005663 ORTHO05D007258 3.2e-07 59.7 144 25.7
Medtr8g092680 Medicago truncatula HOM05D005663 ORTHO05D007258 4.2e-07 59.3 144 26.4
TPR.G2176 Trifolium pratense HOM05D005663 ORTHO05D007258 4.2e-07 59.3 144 26.4
CARHR203580 Cardamine hirsuta HOM05D005663 ORTHO05D007258 7.2e-07 58.5 140 28.6
Carub.0006s0824 Capsella rubella HOM05D005663 ORTHO05D007258 9.4e-07 58.2 140 28.6
AT5G09820 Arabidopsis thaliana HOM05D005663 ORTHO05D007258 1.2e-06 57.8 140 28.6
Hund03480 Selenicereus undatus HOM05D005663 ORTHO05D007258 1.2e-06 57.8 249 24.5
Sopen11g001350 Solanum pennellii HOM05D005663 ORTHO05D007258 1.2e-06 57.8 142 26.1
AL6G20230 Arabidopsis lyrata HOM05D005663 ORTHO05D007258 1.6e-06 57.4 140 28.6
Pp3c6_24510 Physcomitrium patens HOM05D006358 ORTHO05D008185 3.6e-06 56.2 200 25.0
Thhalv10014407m.g Eutrema salsugineum HOM05D005663 ORTHO05D007258 4.7e-06 55.8 140 29.3
Psat7g048760 Pisum sativum HOM05D005663 ORTHO05D007258 6.1e-06 55.5 144 25.7


User provided reference genes

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