Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.I20P02 Arachis hypogaea HOM05D004022 ORTHO05D004090 8.3e-40 167.2 126 100.0
arahy.Tifrunner.gnm1.ann1.NFB54Z Arachis hypogaea HOM05D004022 ORTHO05D004090 8.6e-37 157.1 126 96.8
Lalb_Chr25g0285381 Lupinus albus HOM05D004022 ORTHO05D004090 1.5e-17 93.2 126 46.0
Phvul.005G051400 Phaseolus vulgaris HOM05D004022 ORTHO05D004090 2.2e-16 89.4 120 44.2
Glyma.15G249800 Glycine max HOM05D004022 ORTHO05D004090 2.9e-16 89.0 121 47.1
Glyma.08G176500 Glycine max HOM05D004022 ORTHO05D004090 8.4e-16 87.4 120 45.0
Ca_03390_v3 Cicer arietinum L. HOM05D004022 ORTHO05D004090 2.4e-15 85.9 126 43.7
TPR.G26630 Trifolium pratense HOM05D004022 ORTHO05D004090 1.7e-13 79.7 125 44.0
TPR.G2234 Trifolium pratense HOM05D004022 ORTHO05D004090 1.5e-12 76.6 125 42.4
QL04p070411 Quercus lobata HOM05D004022 ORTHO05D004090 9.6e-12 73.9 117 40.2
Lj3g0000459 Lotus japonicus HOM05D004022 ORTHO05D004090 2.1e-11 72.8 117 42.7
QL04p070436 Quercus lobata HOM05D004022 ORTHO05D004090 2.1e-11 72.8 117 39.3
Medtr2g070550 Medicago truncatula HOM05D004022 ORTHO05D004090 6.2e-11 71.2 119 41.2
Thecc.07G146700 Theobroma cacao HOM05D004022 ORTHO05D004090 6.2e-11 71.2 116 39.7
QL04p070376 Quercus lobata HOM05D004022 ORTHO05D004090 1.1e-10 70.5 117 38.5
Duzib213G0178 Durio zibethinus HOM05D004022 ORTHO05D004090 1.4e-10 70.1 118 36.4
COL.COLO4_17416 Corchorus olitorius HOM05D004022 ORTHO05D004090 1.8e-10 69.7 119 52.1
Haze_08493 Corylus avellana HOM05D004022 ORTHO05D004090 1.8e-10 69.7 113 41.6
Cfa019453 Carpinus fangiana HOM05D004022 ORTHO05D004090 3.1e-10 68.9 116 40.5
FAN16G3013 Fragaria x ananassa HOM05D004022 ORTHO05D004090 1.5e-09 66.6 125 36.0
PGR083G0572 Punica granatum HOM05D004022 ORTHO05D004090 2.6e-09 65.9 111 41.4
FAN21G1087 Fragaria x ananassa HOM05D004022 ORTHO05D004090 3.4e-09 65.5 125 36.0
Lj3g0019101 Lotus japonicus HOM05D004022 ORTHO05D004090 3.4e-09 65.5 112 40.2
Prupe.4G149000 Prunus persica HOM05D004022 ORTHO05D004090 3.4e-09 65.5 123 38.2
FAN25G3340 Fragaria x ananassa HOM05D004022 ORTHO05D004090 4.5e-09 65.1 135 34.8
Psat1g075360 Pisum sativum HOM05D004022 ORTHO05D004090 4.5e-09 65.1 41 82.9
RcHm_v2.0_Chr5g0027761 Rosa chinensis HOM05D004022 ORTHO05D004090 4.5e-09 65.1 125 39.2
TWI38G0355 Tripterygium wilfordii HOM05D004022 ORTHO05D004090 4.5e-09 65.1 115 38.3
Potri.011G095900 Populus trichocarpa HOM05D004022 ORTHO05D004090 5.8e-09 64.7 128 33.6
ECA236G3547 Erigeron canadensis HOM05D004022 ORTHO05D004090 1.7e-08 63.2 122 37.7
Gohir.D01G029300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.7e-08 63.2 115 35.7
Gorai.002G038600 Gossypium raimondii HOM05D004022 ORTHO05D004090 1.7e-08 63.2 115 35.7
CSS0036966 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 2.2e-08 62.8 112 34.8
Eucgr.F01407 Eucalyptus grandis HOM05D004022 ORTHO05D004090 2.2e-08 62.8 39 79.5
Eucgr.F01408 Eucalyptus grandis HOM05D004022 ORTHO05D004090 2.9e-08 62.4 39 79.5
FAN11G3697 Fragaria x ananassa HOM05D004022 ORTHO05D004090 2.9e-08 62.4 125 35.2
Medtr6g042010 Medicago truncatula HOM05D004022 ORTHO05D004090 6.4e-08 61.2 44 70.5
CANSAT56G3333 Cannabis sativa HOM05D004022 ORTHO05D004090 8.4e-08 60.8 116 44.8
DCAR_021057 Daucus carota HOM05D004022 ORTHO05D004090 8.4e-08 60.8 124 34.7
SalBow8G0217 Salvia bowleyana HOM05D004022 ORTHO05D004090 1.1e-07 60.5 37 78.4
SalBow8G5432 Salvia bowleyana HOM05D004022 ORTHO05D004090 1.1e-07 60.5 37 78.4
Medtr6g041990 Medicago truncatula HOM05D004022 ORTHO05D004090 1.4e-07 60.1 46 63.0
Potri.001G378300 Populus trichocarpa HOM05D004022 ORTHO05D004090 1.4e-07 60.1 117 35.0
AUR62027101 Chenopodium quinoa HOM05D004022 ORTHO05D004090 1.9e-07 59.7 122 34.4
Lalb_Chr19g0133591 Lupinus albus HOM05D004022 ORTHO05D004090 1.9e-07 59.7 51 62.7
Nitab4.5_0001924g0010 Nicotiana tabacum HOM05D004022 ORTHO05D004090 1.9e-07 59.7 112 33.0
Peaxi162Scf00000g00573 Petunia axillaris HOM05D004022 ORTHO05D004090 1.9e-07 59.7 33 84.8
Sabra16G0249100 Salix brachista HOM05D004022 ORTHO05D004090 1.9e-07 59.7 116 34.5
TAR627G0510 Trochodendron aralioides HOM05D004022 ORTHO05D004090 1.9e-07 59.7 37 78.4
Duzib268G0389 Durio zibethinus HOM05D004022 ORTHO05D004090 2.4e-07 59.3 114 35.1
RhsimUnG0204300 Rhododendron simsii HOM05D004022 ORTHO05D004090 2.4e-07 59.3 38 76.3
Migut.M00648 Erythranthe guttata HOM05D004022 ORTHO05D004090 3.2e-07 58.9 32 90.6
Sopen07g029950 Solanum pennellii HOM05D004022 ORTHO05D004090 3.2e-07 58.9 32 87.5
PGSC0003DMG400027649 Solanum tuberosum HOM05D004022 ORTHO05D004090 4.2e-07 58.5 32 84.4
Solyc07g056600.1 Solanum lycopersicum HOM05D004022 ORTHO05D004090 5.5e-07 58.2 32 81.2
CAN.G1003.7 Capsicum annuum HOM05D004022 ORTHO05D004090 7.1e-07 57.8 32 84.4
Migut.M00651 Erythranthe guttata HOM05D004022 ORTHO05D004090 7.1e-07 57.8 32 87.5
HanXRQChr15g0492271 Helianthus annuus HOM05D004022 ORTHO05D004090 7.1e-07 57.8 38 78.9
EL10Ac9g22063 Beta vulgaris HOM05D004022 ORTHO05D004090 9.3e-07 57.4 130 31.5
Aa31LG4G2550 Aethionema arabicum HOM05D004022 ORTHO05D004090 1.2e-06 57.0 43 69.8
FvH4_3g16620 Fragaria vesca HOM05D004022 ORTHO05D004090 1.2e-06 57.0 46 69.6
HanXRQChr11g0330361 Helianthus annuus HOM05D004022 ORTHO05D004090 1.2e-06 57.0 38 78.9
Lsat_1_v5_gn_7_101401 Lactuca sativa HOM05D004022 ORTHO05D004090 1.6e-06 56.6 33 78.8
Nitab4.5_0005080g0020 Nicotiana tabacum HOM05D004022 ORTHO05D004090 1.6e-06 56.6 32 75.0
unitig_746.g26690 Utricularia gibba HOM05D004022 ORTHO05D004090 1.6e-06 56.6 38 76.3
Cpa.g.sc2579.1 Carica papaya HOM05D004022 ORTHO05D004090 2.1e-06 56.2 42 71.4
MELO3C016156.2 Cucumis melo HOM05D004022 ORTHO05D004090 2.1e-06 56.2 113 35.4
Lsat_1_v5_gn_7_101361 Lactuca sativa HOM05D004022 ORTHO05D004090 2.7e-06 55.8 31 83.9
THA.LOC104813977 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 2.7e-06 55.8 39 69.2
Carub.0002s2531 Capsella rubella HOM05D004022 ORTHO05D004090 3.5e-06 55.5 42 69.0
Migut.M00647 Erythranthe guttata HOM05D004022 ORTHO05D004090 3.5e-06 55.5 32 84.4
Migut.M00652 Erythranthe guttata HOM05D004022 ORTHO05D004090 3.5e-06 55.5 32 84.4
Peaxi162Scf00111g00083 Petunia axillaris HOM05D004022 ORTHO05D004090 3.5e-06 55.5 31 80.6
AL2G38780 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 4.6e-06 55.1 42 69.0
BcaC03g15811 Brassica carinata HOM05D004022 ORTHO05D004090 4.6e-06 55.1 42 69.0
A02p22170 Brassica napus HOM05D004022 ORTHO05D004090 4.6e-06 55.1 42 69.0
C02p35580 Brassica napus HOM05D004022 ORTHO05D004090 4.6e-06 55.1 42 69.0
BolC2t09573H Brassica oleracea HOM05D004022 ORTHO05D004090 4.6e-06 55.1 42 69.0
BraA02t07221Z Brassica rapa HOM05D004022 ORTHO05D004090 4.6e-06 55.1 42 69.0
CAN.G904.20 Capsicum annuum HOM05D004022 ORTHO05D004090 4.6e-06 55.1 36 72.2
QL05p057789 Quercus lobata HOM05D004022 ORTHO05D004090 4.6e-06 55.1 30 90.0
Sp5g33510 Schrenkiella parvula HOM05D004022 ORTHO05D004090 4.6e-06 55.1 42 69.0
Atru.chr10.1218 Acer truncatum HOM05D004022 ORTHO05D004090 6.0e-06 54.7 37 70.3
C06p52350 Brassica napus HOM05D004022 ORTHO05D004090 6.0e-06 54.7 34 76.5
Dinv26665 Davidia involucrata HOM05D004022 ORTHO05D004090 6.0e-06 54.7 42 66.7
Duzib192G0777 Durio zibethinus HOM05D004022 ORTHO05D004090 6.0e-06 54.7 117 38.5
Sopen12g006680 Solanum pennellii HOM05D004022 ORTHO05D004090 6.0e-06 54.7 35 71.4
THA.LOC104812289 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 6.0e-06 54.7 32 81.2
TPR.G19691 Trifolium pratense HOM05D004022 ORTHO05D004090 6.0e-06 54.7 47 61.7
unitig_899.g15299 Utricularia gibba HOM05D004022 ORTHO05D004090 6.0e-06 54.7 46 63.0
BcaC08g45417 Brassica carinata HOM05D004022 ORTHO05D004090 7.9e-06 54.3 42 69.0
C06p30490 Brassica napus HOM05D004022 ORTHO05D004090 7.9e-06 54.3 42 69.0
BolC6t38212H Brassica oleracea HOM05D004022 ORTHO05D004090 7.9e-06 54.3 42 69.0
CSS0009778 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 7.9e-06 54.3 37 70.3
CAN.G262.11 Capsicum annuum HOM05D004022 ORTHO05D004090 7.9e-06 54.3 36 69.4
AUR62012877 Chenopodium quinoa HOM05D004022 ORTHO05D004090 7.9e-06 54.3 113 34.5
Gohir.A04G046900 Gossypium hirsutum HOM05D004022 ORTHO05D004090 7.9e-06 54.3 114 33.3
Gohir.D10G042200 Gossypium hirsutum HOM05D004022 ORTHO05D004090 7.9e-06 54.3 37 75.7
Gorai.011G044800 Gossypium raimondii HOM05D004022 ORTHO05D004090 7.9e-06 54.3 37 75.7


User provided reference genes

Program Settings