Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.I1PATR Arachis hypogaea HOM05D000452 ORTHO05D005748 6.5e-285 983.4 510 100.0
arahy.Tifrunner.gnm1.ann1.S7ZFT4 Arachis hypogaea HOM05D000452 ORTHO05D005748 3.2e-271 937.9 510 95.5
arahy.Tifrunner.gnm1.ann1.AXM315 Arachis hypogaea HOM05D000452 ORTHO05D005748 5.0e-269 930.6 510 94.7
arahy.Tifrunner.gnm1.ann1.WEDN33 Arachis hypogaea HOM05D000452 ORTHO05D005748 3.9e-261 904.4 522 92.3
Lalb_Chr01g0004351 Lupinus albus HOM05D000452 ORTHO05D005748 4.9e-216 754.6 492 78.3
Lj3g0027876 Lotus japonicus HOM05D000452 ORTHO05D005748 1.1e-207 726.9 490 78.4
Glyma.11G145300 Glycine max HOM05D000452 ORTHO05D005748 9.3e-207 723.8 511 75.3
Lalb_Chr19g0137171 Lupinus albus HOM05D000452 ORTHO05D005748 1.6e-203 713.0 485 76.5
Medtr4g058890 Medicago truncatula HOM05D000452 ORTHO05D005748 6.3e-203 711.1 488 75.6
VMungo1127G0723 Vigna mungo HOM05D000452 ORTHO05D005748 7.2e-199 697.6 511 73.4
Phvul.011G080300 Phaseolus vulgaris HOM05D000452 ORTHO05D005748 1.6e-198 696.4 511 73.2
Psat7g192440 Pisum sativum HOM05D000452 ORTHO05D005748 6.3e-187 657.9 484 73.3
Haze_23811 Corylus avellana HOM05D000452 ORTHO05D005748 3.2e-183 645.6 514 66.5
RcHm_v2.0_Chr5g0058721 Rosa chinensis HOM05D000452 ORTHO05D005748 1.4e-181 640.2 517 66.2
FAN21G3667 Fragaria x ananassa HOM05D000452 ORTHO05D005748 3.0e-181 639.0 517 65.4
FvH4_3g31960 Fragaria vesca HOM05D000452 ORTHO05D005748 2.0e-180 636.3 517 65.2
FAN11G0834 Fragaria x ananassa HOM05D000452 ORTHO05D005748 2.6e-180 636.0 517 65.2
FAN25G3410 Fragaria x ananassa HOM05D000452 ORTHO05D005748 3.7e-179 632.1 516 64.9
CiPaw.13G114400 Carya illinoinensis HOM05D000452 ORTHO05D005748 7.0e-178 627.9 471 69.6
Cfa011305 Carpinus fangiana HOM05D000452 ORTHO05D005748 1.1e-175 620.5 438 72.1
GSVIVG01025200001 Vitis vinifera HOM05D000452 ORTHO05D005748 3.0e-173 612.5 520 63.7
Ca_19270_v3 Cicer arietinum L. HOM05D000452 ORTHO05D005748 1.2e-172 610.5 484 68.4
CANSAT54G2994 Cannabis sativa HOM05D000452 ORTHO05D005748 2.8e-171 605.9 493 65.1
Thecc.09G342400 Theobroma cacao HOM05D000452 ORTHO05D005748 1.4e-170 603.6 514 64.6
QL01p021907 Quercus lobata HOM05D000452 ORTHO05D005748 1.8e-170 603.2 609 55.8
Prupe.6G103100 Prunus persica HOM05D000452 ORTHO05D005748 1.2e-169 600.5 515 64.7
MD03G1119900 Malus domestica HOM05D000452 ORTHO05D005748 4.5e-169 598.6 512 63.7
Manes.04G019700 Manihot esculenta HOM05D000452 ORTHO05D005748 1.7e-168 596.7 513 62.4
MD11G1137500 Malus domestica HOM05D000452 ORTHO05D005748 3.8e-168 595.5 513 63.7
COL.COLO4_18319 Corchorus olitorius HOM05D000452 ORTHO05D002419 1.5e-167 593.6 487 64.9
Potri.009G011400 Populus trichocarpa HOM05D000452 ORTHO05D005748 1.5e-167 593.6 513 61.8
TWI79G0017 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 9.5e-167 590.9 486 64.0
TWI31G0927 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 3.6e-166 589.0 518 61.8
Gorai.003G142700 Gossypium raimondii HOM05D000452 ORTHO05D005748 1.0e-165 587.4 492 64.8
CSS0006947 Camellia sinensis var. sinensis HOM05D000452 ORTHO05D005748 3.0e-165 585.9 497 62.0
Gohir.A03G032800 Gossypium hirsutum HOM05D000452 ORTHO05D005748 8.9e-165 584.3 492 64.6
Actinidia03722 Actinidia chinensis HOM05D000452 ORTHO05D005748 3.1e-162 575.9 458 66.2
Gohir.D03G135600 Gossypium hirsutum HOM05D000452 ORTHO05D005748 5.9e-161 571.6 493 63.7
Hma1.2p1_0307F.1_g119780 Hydrangea macrophylla HOM05D000452 ORTHO05D005748 1.0e-160 570.9 516 60.9
Nitab4.5_0005742g0010 Nicotiana tabacum HOM05D000452 ORTHO05D005748 1.0e-160 570.9 498 59.4
TAR636G2205 Trochodendron aralioides HOM05D000452 ORTHO05D005748 2.9e-160 569.3 517 61.1
TPR.G6153 Trifolium pratense HOM05D000452 ORTHO05D005748 2.1e-158 563.1 488 64.8
Nitab4.5_0000602g0100 Nicotiana tabacum HOM05D000452 ORTHO05D005748 4.7e-158 562.0 497 58.6
Peaxi162Scf00270g00311 Petunia axillaris HOM05D000452 ORTHO05D005748 4.7e-158 562.0 499 58.9
Solyc11g069520.2 Solanum lycopersicum HOM05D000452 ORTHO05D005748 5.2e-157 558.5 495 59.4
Cc01_g11000 Coffea canephora HOM05D000452 ORTHO05D005748 1.2e-156 557.4 495 59.8
Rhsim13G0095000 Rhododendron simsii HOM05D000452 ORTHO05D005748 1.5e-156 557.0 509 61.3
Sopen11g028230 Solanum pennellii HOM05D000452 ORTHO05D005748 7.5e-156 554.7 495 59.2
Eucgr.B02508 Eucalyptus grandis HOM05D000452 ORTHO05D005748 2.9e-155 552.7 519 59.7
TAR633G0246 Trochodendron aralioides HOM05D000452 ORTHO05D005748 2.9e-155 552.7 513 60.6
vmacro03204 Vaccinium macrocarpon HOM05D000452 ORTHO05D005748 2.9e-155 552.7 479 62.2
PGSC0003DMG400008083 Solanum tuberosum HOM05D000452 ORTHO05D005748 3.7e-155 552.4 489 59.1
Ciclev10028288m.g Citrus clementina HOM05D000452 ORTHO05D005748 8.3e-155 551.2 490 59.6
MELO3C004897.2 Cucumis melo HOM05D000452 ORTHO05D005748 5.4e-154 548.5 516 57.4
PSO339G2396 Papaver somniferum HOM05D000452 ORTHO05D005748 3.5e-153 545.8 491 59.7
CsaV3_1G013960 Cucumis sativus L. HOM05D000452 ORTHO05D005748 3.0e-152 542.7 472 60.8
Sed0009159 Sechium edule HOM05D000452 ORTHO05D005748 8.6e-152 541.2 513 57.3
Migut.D02233 Erythranthe guttata HOM05D000452 ORTHO05D005748 1.5e-151 540.4 496 59.5
Sc06g0010310 Simmondsia chinensis HOM05D000452 ORTHO05D005748 3.3e-151 539.3 441 63.3
ClCG01G013590 Citrullus lanatus HOM05D000452 ORTHO05D005748 9.5e-151 537.7 478 58.8
Lj2C1024T12 Lonicera japonica HOM05D000452 ORTHO05D005748 9.5e-151 537.7 410 66.8
Nn2g10818 Nelumbo nucifera HOM05D000452 ORTHO05D005748 8.0e-150 534.6 491 58.9
MSTRG.21118 Avicennia marina HOM05D000452 ORTHO05D005748 1.4e-149 533.9 494 58.1
BcaC05g24718 Brassica carinata HOM05D000452 ORTHO05D005748 2.3e-149 533.1 492 60.0
BolC5t29365H Brassica oleracea HOM05D000452 ORTHO05D005748 2.3e-149 533.1 492 60.0
PGR102G2372 Punica granatum HOM05D000452 ORTHO05D005748 5.8e-148 528.5 509 58.9
AT1G08030 Arabidopsis thaliana HOM05D000452 ORTHO05D005748 4.9e-147 525.4 501 55.5
HanXRQChr01g0019321 Helianthus annuus HOM05D000452 ORTHO05D005748 6.4e-147 525.0 488 58.8
AL1G18360 Arabidopsis lyrata HOM05D000452 ORTHO05D005748 1.1e-146 524.2 480 58.3
A06p05090 Brassica napus HOM05D000452 ORTHO05D005748 1.9e-146 523.5 417 66.2
Thhalv10007441m.g Eutrema salsugineum HOM05D000452 ORTHO05D005748 5.4e-146 521.9 494 56.9
Dinv02128 Davidia involucrata HOM05D000452 ORTHO05D005748 7.0e-146 521.5 513 57.1
CARHR007800 Cardamine hirsuta HOM05D000452 ORTHO05D005748 1.2e-145 520.8 500 55.6
Oeu030194.1 Olea europaea HOM05D000452 ORTHO05D005748 2.0e-145 520.0 478 56.9
AUR62042196 Chenopodium quinoa HOM05D000452 ORTHO05D005748 3.5e-145 519.2 431 64.5
EL10Ac9g22533 Beta vulgaris HOM05D000452 ORTHO05D005748 6.0e-145 518.5 460 62.0
AUR62024960 Chenopodium quinoa HOM05D000452 ORTHO05D005748 6.0e-145 518.5 438 63.2
Carub.0001s0737 Capsella rubella HOM05D000452 ORTHO05D005748 2.3e-144 516.5 475 58.1
C05p06050 Brassica napus HOM05D000452 ORTHO05D005748 3.0e-144 516.2 430 62.8
THA.LOC104826371 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 3.9e-144 515.8 471 58.2
SGA_v2.0_scaffold180G39657 Striga asiatica HOM05D000452 ORTHO05D005748 6.6e-144 515.0 482 56.8
Cpa.g.sc279.1 Carica papaya HOM05D000452 ORTHO05D005748 8.6e-144 514.6 455 62.0
ECA248G3240 Erigeron canadensis HOM05D000452 ORTHO05D005748 1.1e-143 514.2 485 57.3
BraA06t23716Z Brassica rapa HOM05D000452 ORTHO05D005748 3.3e-143 512.7 476 58.6
DCAR_022745 Daucus carota HOM05D000452 ORTHO05D005748 4.3e-143 512.3 413 62.7
Oeu014003.1 Olea europaea HOM05D000452 ORTHO05D005748 1.6e-142 510.4 446 59.0
THA.LOC104800598 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 2.8e-142 509.6 470 57.0
CsaV3_1G013970 Cucumis sativus L. HOM05D000452 ORTHO05D005748 8.1e-142 508.1 516 54.3
Aqoxy1G01223 Aquilegia oxysepala HOM05D000452 ORTHO05D005748 3.1e-141 506.1 437 59.7
BcaB02g06693 Brassica carinata HOM05D000452 ORTHO05D005748 8.9e-141 504.6 477 56.4
Sp1g06650 Schrenkiella parvula HOM05D000452 ORTHO05D005748 2.6e-140 503.1 470 56.8
CsaV3_1G013990 Cucumis sativus L. HOM05D000452 ORTHO05D005748 8.3e-139 498.0 512 53.7
HanXRQChr07g0195801 Helianthus annuus HOM05D000452 ORTHO05D005748 7.1e-138 495.0 510 54.1
CiPaw.14G081900 Carya illinoinensis HOM05D000452 ORTHO05D005748 3.5e-137 492.7 440 60.9
PSO384G2013 Papaver somniferum HOM05D000452 ORTHO05D005748 7.8e-137 491.5 410 62.0
Zm00001eb271200 Zea mays HOM05D000452 ORTHO05D005748 1.3e-136 490.7 498 54.4
Lsat_1_v5_gn_1_64080 Lactuca sativa HOM05D000452 ORTHO05D005748 8.6e-136 488.0 475 57.3
Zm00001eb376480 Zea mays HOM05D000452 ORTHO05D005748 1.9e-135 486.9 436 60.1
A08p35370 Brassica napus HOM05D000452 ORTHO05D005748 1.2e-134 484.2 489 54.2
BolC8t47149H Brassica oleracea HOM05D000452 ORTHO05D005748 2.1e-134 483.4 487 55.0
BcaB03g13356 Brassica carinata HOM05D000452 ORTHO05D005748 3.6e-134 482.6 491 55.0
BraA08t35443Z Brassica rapa HOM05D000452 ORTHO05D005748 4.7e-134 482.3 487 54.0
PSO339G5930 Papaver somniferum HOM05D000452 ORTHO05D005748 1.1e-133 481.1 452 58.2
C08p03470 Brassica napus HOM05D000452 ORTHO05D005748 5.2e-133 478.8 484 54.5
CDE02G3238 Ceratophyllum demersum HOM05D000452 ORTHO05D005748 6.8e-133 478.4 495 52.7
unitig_736.g22410 Utricularia gibba HOM05D000452 ORTHO05D005748 1.5e-132 477.2 486 55.1
Oeu037301.1 Olea europaea HOM05D000452 ORTHO05D005748 2.2e-131 473.4 507 53.1
ECA238G2818 Erigeron canadensis HOM05D000452 ORTHO05D005748 2.9e-131 473.0 484 54.3
Aa31sc122G10 Aethionema arabicum HOM05D000452 ORTHO05D005748 1.6e-126 457.2 461 53.8
Lj1C203G7 Lonicera japonica HOM05D000452 ORTHO05D005748 4.7e-126 455.7 456 57.5
ATR0048G028 Amborella trichopoda HOM05D000452 ORTHO05D005748 1.9e-122 443.7 423 57.4
SEGI_04235 Sequoiadendron giganteum HOM05D000452 ORTHO05D005748 1.1e-119 434.5 512 49.0
Lsat_1_v5_gn_2_100281 Lactuca sativa HOM05D000452 ORTHO05D005748 2.5e-119 433.3 400 57.5
Atru.chr3.3611 Acer truncatum HOM05D000452 ORTHO05D005748 9.3e-114 414.8 416 56.7
PSO063G2649 Papaver somniferum HOM05D000452 ORTHO05D005748 2.3e-112 410.2 394 58.1
HPP92_008616 Vanilla planifolia HOM05D000452 ORTHO05D005748 4.3e-111 406.0 309 63.4
MBI07_g26020_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 2.8e-110 403.3 409 56.5
CsaV3_1G013980 Cucumis sativus L. HOM05D000452 ORTHO05D005748 5.8e-108 395.6 476 49.4
Peaxi162Scf00034g00107 Petunia axillaris HOM05D000452 ORTHO05D005748 9.9e-108 394.8 500 47.0
Oeu001281.1 Olea europaea HOM05D000452 ORTHO05D005748 7.4e-103 378.6 382 56.3
Lsat_1_v5_gn_9_37660 Lactuca sativa HOM05D000452 ORTHO05D005748 2.4e-101 373.6 329 59.9
SalBow3G4114 Salvia bowleyana HOM05D000452 ORTHO05D005748 3.2e-98 363.2 337 56.7
RhsimUnG0046400 Rhododendron simsii HOM05D000452 ORTHO05D005748 6.7e-96 355.5 467 48.4
Mapoly0061s0093 Marchantia polymorpha HOM05D000452 ORTHO05D005748 2.8e-94 350.1 444 44.6
AagrBONN_evm.TU.Sc2ySwM_117.3844 Anthoceros agrestis HOM05D000452 ORTHO05D005748 4.1e-93 346.3 518 41.7
Hund08167 Selenicereus undatus HOM05D000452 ORTHO05D005748 8.5e-91 338.6 367 55.6
Lsat_1_v5_gn_2_91861 Lactuca sativa HOM05D000452 ORTHO05D005748 7.2e-90 335.5 326 55.5
Pp3c16_24250 Physcomitrium patens HOM05D000452 ORTHO05D005748 2.7e-89 333.6 481 43.2
Dinv01781 Davidia involucrata HOM05D000452 ORTHO05D005748 2.0e-76 290.8 216 67.1
SMO134G0053 Selaginella moellendorffii HOM05D000452 ORTHO05D005748 1.7e-75 287.7 321 48.6
SHI19559 Sapria himalayana HOM05D000452 ORTHO05D005748 3.8e-75 286.6 240 57.1
DCAR_018802 Daucus carota HOM05D000452 ORTHO05D005748 5.0e-75 286.2 293 52.2
Os06g0158200 Oryza sativa ssp. japonica HOM05D000452 ORTHO05D005748 3.5e-68 263.5 189 69.3
CBR_g51944 Chara braunii HOM05D000452 ORTHO05D005748 1.7e-67 261.2 514 34.8
MBI10_g19822_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 5.2e-64 249.6 304 49.3
Dinv32733 Davidia involucrata HOM05D000452 ORTHO05D005748 2.2e-62 244.2 227 62.6
TPR.G26833 Trifolium pratense HOM05D000452 ORTHO05D005748 2.2e-54 217.6 132 79.5
Lsat_1_v5_gn_5_88800 Lactuca sativa HOM05D000452 ORTHO05D005748 1.4e-48 198.4 209 53.1
Cre01.g022600 Chlamydomonas reinhardtii HOM05D000452 ORTHO05D005748 2.2e-38 164.5 298 34.2
PRCOL_00001963 Prasinoderma coloniale HOM05D000452 ORTHO05D005748 3.0e-35 154.1 435 29.4
Lsat_1_v5_gn_3_50740 Lactuca sativa HOM05D000452 ORTHO05D005748 3.6e-33 147.1 122 61.5
SHI19558 Sapria himalayana HOM05D000452 ORTHO05D000031 3.4e-31 140.6 203 40.9
Hund08166 Selenicereus undatus HOM05D000452 ORTHO05D005748 3.3e-26 124.0 93 62.4
C04p54260 Brassica napus HOM05D000452 ORTHO05D005748 5.6e-26 123.2 83 69.9
MD11G1150200 Malus domestica HOM05D000452 ORTHO05D005748 5.2e-24 116.7 80 66.2
BcaC02g08433 Brassica carinata HOM05D000452 ORTHO05D005748 3.3e-18 97.4 67 68.7
BolC4t23229H Brassica oleracea HOM05D000452 ORTHO05D005748 4.7e-17 93.6 63 69.8
BolC2t09709H Brassica oleracea HOM05D000452 ORTHO05D005748 2.4e-16 91.3 63 68.3
MBI15_g38533_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 6.8e-16 89.7 129 48.8
HPP92_008615 Vanilla planifolia HOM05D000452 ORTHO05D005748 1.4e-13 82.0 105 44.8
Lsat_1_v5_gn_4_22460 Lactuca sativa HOM05D000344 ORTHO05D005714 1.7e-11 75.1 57 64.9
C07p54990 Brassica napus HOM05D000452 ORTHO05D005748 1.5e-10 72.0 46 69.6
PRCOL_00002815 Prasinoderma coloniale HOM05D000452 ORTHO05D333388 1.2e-07 62.4 392 24.0
BcaC02g07555 Brassica carinata HOM05D000452 ORTHO05D005748 1.5e-07 62.0 66 50.0


User provided reference genes

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