Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.I1BHDP Arachis hypogaea HOM05D003570 ORTHO05D004207 0.0e+00 1234.6 686 100.0
arahy.Tifrunner.gnm1.ann1.8897EQ Arachis hypogaea HOM05D003570 ORTHO05D004207 0.0e+00 1149.4 682 94.7
Phvul.001G256000 Phaseolus vulgaris HOM05D003570 ORTHO05D004207 9.9e-220 767.3 640 71.2
VMungo1383G2895 Vigna mungo HOM05D003570 ORTHO05D004207 2.3e-216 756.1 646 70.6
Glyma.11G244100 Glycine max HOM05D003570 ORTHO05D004207 3.1e-213 745.7 635 69.4
Ca_25131_v3 Cicer arietinum L. HOM05D001269 ORTHO05D001083 6.9e-213 744.6 626 71.1
Psat5g092360 Pisum sativum HOM05D003570 ORTHO05D004207 4.3e-207 725.3 638 68.7
Lalb_Chr08g0230861 Lupinus albus HOM05D003570 ORTHO05D004207 1.9e-202 709.9 555 74.6
Medtr3g086460 Medicago truncatula HOM05D003570 ORTHO05D004207 1.1e-197 694.1 616 68.8
Lj6g0027950 Lotus japonicus HOM05D003570 ORTHO05D004207 1.3e-195 687.2 639 66.0
TPR.G35967 Trifolium pratense HOM05D003570 ORTHO05D004207 9.3e-194 681.0 638 65.2
Lj4g0018208 Lotus japonicus HOM05D003570 ORTHO05D004207 2.1e-193 679.9 637 65.9
Haze_12279 Corylus avellana HOM05D003570 ORTHO05D004207 1.6e-169 600.5 633 58.5
COL.COLO4_23499 Corchorus olitorius HOM05D003570 ORTHO05D004207 3.0e-168 596.3 643 55.7
Duzib248G0757 Durio zibethinus HOM05D003570 ORTHO05D004207 1.7e-166 590.5 635 57.6
CiPaw.06G064800 Carya illinoinensis HOM05D003570 ORTHO05D004207 8.2e-166 588.2 633 58.1
Thecc.02G265200 Theobroma cacao HOM05D003570 ORTHO05D004207 9.1e-165 584.7 645 57.5
Potri.008G183500 Populus trichocarpa HOM05D003570 ORTHO05D004207 1.6e-164 583.9 633 57.2
Ciclev10030923m.g Citrus clementina HOM05D003570 ORTHO05D004207 3.2e-162 576.2 646 53.6
Manes.13G020900 Manihot esculenta HOM05D003570 ORTHO05D004207 2.1e-161 573.5 632 55.9
Eucgr.B03244 Eucalyptus grandis HOM05D003570 ORTHO05D004207 5.2e-160 568.9 651 54.2
Prupe.1G241900 Prunus persica HOM05D003570 ORTHO05D004207 3.1e-157 559.7 631 54.0
QL03p056574 Quercus lobata HOM05D003570 ORTHO05D004207 2.0e-156 557.0 614 56.5
Cpa.g.sc13.88 Carica papaya HOM05D003570 ORTHO05D004207 2.7e-156 556.6 676 51.8
Gohir.D04G180400 Gossypium hirsutum HOM05D003570 ORTHO05D004207 2.9e-155 553.1 631 54.8
Gorai.012G173500 Gossypium raimondii HOM05D003570 ORTHO05D004207 2.9e-155 553.1 635 55.3
CANSAT11G1164 Cannabis sativa HOM05D003570 ORTHO05D004207 5.0e-155 552.4 642 53.0
Gohir.A04G137200 Gossypium hirsutum HOM05D003570 ORTHO05D004207 6.1e-153 545.4 637 54.2
TWI36G1196 Tripterygium wilfordii HOM05D003570 ORTHO05D004207 9.8e-151 538.1 633 52.1
RcHm_v2.0_Chr4g0432651 Rosa chinensis HOM05D003570 ORTHO05D004207 3.7e-150 536.2 638 53.1
THA.LOC104805269 Tarenaya hassleriana HOM05D003570 ORTHO05D004207 1.2e-148 531.2 638 51.7
PGR102G1250 Punica granatum HOM05D003570 ORTHO05D004207 1.7e-147 527.3 632 50.2
FvH4_4g25360 Fragaria vesca HOM05D003570 ORTHO05D004207 1.5e-146 524.2 637 51.0
FAN07G1326 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.5e-146 524.2 648 52.6
FAN12G2286 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.5e-146 524.2 650 48.9
Atru.chr11.2174 Acer truncatum HOM05D003570 ORTHO05D004207 6.1e-145 518.8 636 53.9
FAN22G0389 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.0e-144 518.1 638 50.9
Nn4g22548 Nelumbo nucifera HOM05D003570 ORTHO05D004207 6.4e-142 508.8 667 45.6
GSVIVG01000572001 Vitis vinifera HOM05D003570 ORTHO05D004207 2.4e-141 506.9 644 49.2
TAR622G0746 Trochodendron aralioides HOM05D003570 ORTHO05D004207 9.2e-141 505.0 643 50.4
CsaV3_5G030790 Cucumis sativus L. HOM05D003570 ORTHO05D004207 2.6e-135 486.9 639 48.8
Nitab4.5_0002373g0110 Nicotiana tabacum HOM05D003570 ORTHO05D004207 1.4e-133 481.1 649 46.2
MD13G1104500 Malus domestica HOM05D003570 ORTHO05D004207 9.2e-133 478.4 564 54.1
FAN17G0862 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.2e-132 478.0 645 46.8
Actinidia37450 Actinidia chinensis HOM05D003570 ORTHO05D004207 3.9e-131 473.0 634 48.3
ClCG05G026050 Citrullus lanatus HOM05D003570 ORTHO05D004207 6.6e-131 472.2 635 48.5
QL03p056953 Quercus lobata HOM05D003570 ORTHO05D004207 9.5e-130 468.4 632 50.3
Sed0006332 Sechium edule HOM05D003570 ORTHO05D004207 2.8e-129 466.8 565 52.7
Sc04g0009680 Simmondsia chinensis HOM05D003570 ORTHO05D004207 6.2e-129 465.7 634 47.3
MELO3C011924.2 Cucumis melo HOM05D003570 ORTHO05D004207 3.1e-128 463.4 666 48.0
COL.COLO4_27904 Corchorus olitorius HOM05D003570 ORTHO05D004207 8.9e-128 461.8 694 44.1
AUR62024231 Chenopodium quinoa HOM05D003570 ORTHO05D004207 2.0e-127 460.7 636 46.9
CAN.G1572.8 Capsicum annuum HOM05D003570 ORTHO05D004207 2.2e-126 457.2 630 48.3
Oeu038645.2 Olea europaea HOM05D003570 ORTHO05D004207 1.4e-125 454.5 677 47.0
PSO063G4933 Papaver somniferum HOM05D003570 ORTHO05D004207 5.4e-125 452.6 677 47.0
PSO339G2835 Papaver somniferum HOM05D003570 ORTHO05D004207 7.8e-124 448.7 669 46.0
MBI04_g13681_MAGBIO Magnolia biondii HOM05D003570 ORTHO05D004207 8.6e-123 445.3 630 46.2
HanXRQChr08g0208421 Helianthus annuus HOM05D003570 ORTHO05D004207 5.6e-122 442.6 633 46.4
Peaxi162Scf00128g00550 Petunia axillaris HOM05D003570 ORTHO05D004207 7.3e-122 442.2 635 47.6
Sopen05g008710 Solanum pennellii HOM05D003570 ORTHO05D004207 7.3e-122 442.2 635 46.9
Migut.K00625 Erythranthe guttata HOM05D003570 ORTHO05D004207 2.6e-119 433.7 643 45.4
DCAR_026498 Daucus carota HOM05D003570 ORTHO05D004207 1.2e-116 424.9 638 45.5
MSTRG.553 Avicennia marina HOM05D003570 ORTHO05D004207 8.7e-115 418.7 638 44.0
SGA_v2.0_scaffold22G09799 Striga asiatica HOM05D003570 ORTHO05D004207 5.6e-114 416.0 644 43.8
AL1G24790 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 7.3e-114 415.6 629 43.4
Cc11_g16040 Coffea canephora HOM05D003570 ORTHO05D004207 1.6e-113 414.5 625 45.3
Lsat_1_v5_gn_0_32260 Lactuca sativa HOM05D003570 ORTHO05D004207 4.7e-113 412.9 629 44.5
CiPaw.02G032100 Carya illinoinensis HOM05D003570 ORTHO05D004207 6.2e-113 412.5 627 48.8
Nitab4.5_0004117g0010 Nicotiana tabacum HOM05D003570 ORTHO05D004207 6.9e-112 409.1 646 43.3
BolC8t52217H Brassica oleracea HOM05D003570 ORTHO05D004207 3.4e-111 406.8 625 41.0
AUR62005511 Chenopodium quinoa HOM05D003570 ORTHO05D004207 3.4e-111 406.8 624 43.9
Lj6A815G40 Lonicera japonica HOM05D003570 ORTHO05D004207 5.8e-111 406.0 478 53.3
BraA09t41684Z Brassica rapa HOM05D003570 ORTHO05D004207 3.8e-110 403.3 626 41.4
ATR0824G009 Amborella trichopoda HOM05D003570 ORTHO05D004207 4.2e-109 399.8 617 42.3
Nitab4.5_0001978g0070 Nicotiana tabacum HOM05D003570 ORTHO05D004207 5.4e-109 399.4 684 41.7
Thhalv10007079m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 7.1e-109 399.1 630 44.6
AT1G13120 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 9.3e-109 398.7 629 42.1
CARHR013490 Cardamine hirsuta HOM05D003570 ORTHO05D004207 2.3e-107 394.0 630 44.8
C08p46780 Brassica napus HOM05D003570 ORTHO05D004207 3.3e-106 390.2 625 41.4
ECA233G5166 Erigeron canadensis HOM05D002671 ORTHO05D002985 3.3e-106 390.2 556 45.1
Carub.0001s1286 Capsella rubella HOM05D003570 ORTHO05D004207 4.3e-106 389.8 628 41.7
A09p63350 Brassica napus HOM05D003570 ORTHO05D004207 1.3e-105 388.3 627 44.3
Aqoxy7G03799 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 4.8e-105 386.3 657 44.4
BcaC07g41664 Brassica carinata HOM05D003570 ORTHO05D004207 8.1e-105 385.6 624 39.9
Sabra08G0139700 Salix brachista HOM05D003570 ORTHO05D004207 6.9e-104 382.5 318 61.3
SHI04269 Sapria himalayana HOM05D003570 ORTHO05D004207 2.5e-98 364.0 566 42.0
Aa31LG1G1680 Aethionema arabicum HOM05D003570 ORTHO05D004207 1.3e-97 361.7 643 39.5
Sp1g11650 Schrenkiella parvula HOM05D003570 ORTHO05D004207 2.4e-96 357.5 642 36.6
EL10As2g23162 Beta vulgaris HOM05D003570 ORTHO05D004207 4.0e-96 356.7 497 48.3
PSO063G3251 Papaver somniferum HOM05D003570 ORTHO05D004207 3.3e-90 337.0 648 39.2
SEGI_05718 Sequoiadendron giganteum HOM05D003570 ORTHO05D004207 2.4e-88 330.9 626 38.2
Os02g0596100 Oryza sativa ssp. japonica HOM05D003570 ORTHO05D004207 3.1e-88 330.5 656 39.0
PSO063G1535 Papaver somniferum HOM05D003570 ORTHO05D004207 4.0e-88 330.1 320 54.4
Lj3A151T25 Lonicera japonica HOM05D003570 ORTHO05D004207 9.0e-88 328.9 335 51.9
PSO754G0035 Papaver somniferum HOM05D003570 ORTHO05D004207 5.8e-87 326.2 303 55.8
Oeu038646.1 Olea europaea HOM05D003570 ORTHO05D004207 1.3e-81 308.5 454 45.6
Zm00001eb062020 Zea mays HOM05D003570 ORTHO05D004207 2.6e-79 300.8 577 36.2
vmacro17618 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 1.7e-78 298.1 535 41.7
Zm00001eb212370 Zea mays HOM05D003570 ORTHO05D004207 1.1e-77 295.4 557 36.8
Hma1.2p1_1533F.1_g289360 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 7.9e-76 289.3 261 55.6
AL6G47680 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 3.0e-75 287.3 573 36.3
Rhsim12G0108000 Rhododendron simsii HOM05D003570 ORTHO05D004207 8.8e-75 285.8 266 55.3
Pp3c9_21420 Physcomitrium patens HOM05D003570 ORTHO05D004207 2.5e-74 284.3 664 36.4
PGSC0003DMG400016968 Solanum tuberosum HOM05D003570 ORTHO05D004207 2.4e-72 277.7 253 54.2
Dinv15203 Davidia involucrata HOM05D003570 ORTHO05D004207 2.9e-70 270.8 212 62.7
Dinv11043 Davidia involucrata HOM05D003570 ORTHO05D004207 2.5e-69 267.7 465 42.4
Aqoxy5G03688 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 7.9e-68 262.7 231 58.4
vmacro16171 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 1.8e-67 261.5 237 57.8
Mapoly0004s0250 Marchantia polymorpha HOM05D003570 ORTHO05D004207 2.3e-67 261.2 663 33.9
Aqoxy1G03220 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 5.9e-63 246.5 303 48.2
SMO367G0645 Selaginella moellendorffii HOM05D003570 ORTHO05D004207 3.8e-62 243.8 643 31.4
Thhalv10001133m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 3.6e-60 237.3 606 31.4
FAN08G0154 Fragaria x ananassa HOM05D003570 ORTHO05D004207 3.3e-58 230.7 474 36.1
vmacro16173 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 1.7e-57 228.4 235 52.8
CBR_g38118 Chara braunii HOM05D003570 ORTHO05D004207 1.1e-56 225.7 726 31.8
Haze_20779 Corylus avellana HOM05D003570 ORTHO05D004207 1.4e-56 225.3 288 45.1
Haze_11814 Corylus avellana HOM05D001314 ORTHO05D001165 4.5e-55 220.3 213 54.9
CDE06G1553 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 8.0e-52 209.5 180 55.0
unitig_22.g6426 Utricularia gibba HOM05D003570 ORTHO05D004207 1.0e-46 192.6 182 50.5
CSS0045431 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 3.2e-45 187.6 154 59.7
Rhsim12G0107900 Rhododendron simsii HOM05D003570 ORTHO05D004207 1.0e-43 182.6 370 44.9
Nitab4.5_0000229g0040 Nicotiana tabacum HOM05D003570 ORTHO05D004207 4.4e-42 177.2 295 42.7
vmacro16170 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 3.1e-40 171.0 399 39.1
Medtr7g034350 Medicago truncatula HOM05D003570 ORTHO05D004207 1.6e-39 168.7 182 51.1
FAN13G1935 Fragaria x ananassa HOM05D003570 ORTHO05D004207 5.5e-37 160.2 396 37.6
Sopen04g013730 Solanum pennellii HOM05D003570 ORTHO05D004207 9.5e-37 159.5 122 57.4
EL10Ac8g19584 Beta vulgaris HOM05D003570 ORTHO05D004207 6.1e-36 156.8 173 50.3
Nitab4.5_0000229g0020 Nicotiana tabacum HOM05D003570 ORTHO05D004207 3.7e-33 147.5 296 40.2
AagrBONN_evm.TU.Sc2ySwM_362.2178 Anthoceros agrestis HOM05D003570 ORTHO05D004207 1.6e-31 142.1 169 39.1
vmacro16172 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 5.0e-30 137.1 442 34.8
Glyma.18G013000 Glycine max HOM05D003570 ORTHO05D004207 5.6e-29 133.7 85 75.3
AL2G22720 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 8.0e-28 129.8 141 50.4
Cre06.g300900 Chlamydomonas reinhardtii HOM05D003570 ORTHO05D004207 5.2e-27 127.1 270 32.2
MCO05G059 Micromonas commoda HOM05D003570 ORTHO05D004207 1.5e-26 125.6 322 28.0
Aqoxy5G03687 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 2.9e-25 121.3 248 37.1
Hma1.2p1_0054F.1_g030990 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 1.4e-24 119.0 88 58.0
CSS0031984 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 2.4e-24 118.2 248 33.9
Lj3A151T24 Lonicera japonica HOM05D003570 ORTHO05D004207 4.1e-24 117.5 168 50.0
FAN08G3485 Fragaria x ananassa HOM05D003570 ORTHO05D004207 2.0e-23 115.2 118 52.5
AagrBONN_evm.TU.Sc2ySwM_344.4464 Anthoceros agrestis HOM05D003570 ORTHO05D004207 4.6e-23 114.0 547 30.0
PRCOL_00001147 Prasinoderma coloniale HOM05D003570 ORTHO05D004207 7.8e-23 113.2 275 30.9
TAR374G0522 Trochodendron aralioides HOM05D003570 ORTHO05D004207 1.3e-22 112.5 97 61.9
BolC5t29767H Brassica oleracea HOM05D003570 ORTHO05D004207 5.0e-22 110.5 295 29.5
CDE06G0651 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 1.9e-21 108.6 276 34.8
Hma1.2p1_1533F.1_g289350 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 2.1e-20 105.1 149 40.3
BcaC05g25084 Brassica carinata HOM05D003570 ORTHO05D004207 3.6e-20 104.4 183 36.1
BolC4t26878H Brassica oleracea HOM05D003570 ORTHO05D004207 6.2e-20 103.6 196 37.8
A07p19900 Brassica napus HOM05D003570 ORTHO05D004207 1.5e-18 99.0 194 33.5
C04p53310 Brassica napus HOM05D003570 ORTHO05D004207 1.5e-18 99.0 196 36.2
AT4G05523 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 9.8e-18 96.3 233 32.2
A07p18160 Brassica napus HOM05D003570 ORTHO05D004207 2.2e-17 95.1 187 31.6
BraA01t00580Z Brassica rapa HOM05D003570 ORTHO05D004207 2.2e-17 95.1 187 31.6
TAR374G0931 Trochodendron aralioides HOM05D003570 ORTHO05D004207 3.2e-16 91.3 500 26.2
BcaC06g34341 Brassica carinata HOM05D003570 ORTHO05D004207 7.0e-16 90.1 184 31.0
BcaC05g25085 Brassica carinata HOM05D003570 ORTHO05D004207 1.2e-15 89.4 269 33.8
Sp2g10400 Schrenkiella parvula HOM05D003570 ORTHO05D004207 3.5e-15 87.8 118 43.2
FvH4_5g15750 Fragaria vesca HOM05D003570 ORTHO05D004207 4.6e-15 87.4 71 62.0
EL10As2g23164 Beta vulgaris HOM05D003570 ORTHO05D004207 6.0e-15 87.0 172 32.6
Actinidia15112 Actinidia chinensis HOM05D003570 ORTHO05D004207 7.8e-15 86.7 81 51.9
unitig_22.g6425 Utricularia gibba HOM05D003570 ORTHO05D004207 6.6e-14 83.6 182 39.0
BcaC02g08536 Brassica carinata HOM05D003570 ORTHO05D004207 2.5e-13 81.6 160 35.0
MD05G1151500 Malus domestica HOM05D003570 ORTHO05D004207 2.1e-12 78.6 49 75.5
C05p10220 Brassica napus HOM05D003570 ORTHO05D004207 1.1e-11 76.3 124 35.5
C04p53220 Brassica napus HOM05D003570 ORTHO05D004207 2.3e-11 75.1 142 35.2
EL10Ac1g01653 Beta vulgaris HOM05D003570 ORTHO05D004207 6.8e-11 73.6 59 59.3
FAN18G0384 Fragaria x ananassa HOM05D003570 ORTHO05D004207 4.4e-10 70.9 151 35.1
Actinidia15111 Actinidia chinensis HOM05D003570 ORTHO05D004207 1.7e-09 68.9 76 52.6
FvH4_5g15741 Fragaria vesca HOM05D003570 ORTHO05D004207 2.2e-09 68.6 147 34.7
AL2G22730 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 3.7e-09 67.8 100 41.0
CARHR253470 Cardamine hirsuta HOM05D003570 ORTHO05D004207 4.9e-09 67.4 161 32.3
PSO063G3896 Papaver somniferum HOM05D003570 ORTHO05D004207 4.1e-08 64.3 243 33.7
C07p30170 Brassica napus HOM05D003570 ORTHO05D004207 9.2e-08 63.2 66 45.5
QL93p0107_0801 Quercus lobata HOM05D003570 ORTHO05D004207 7.8e-07 60.1 134 36.6
C03p39130 Brassica napus HOM05D003570 ORTHO05D004207 6.6e-06 57.0 108 32.4


User provided reference genes

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