Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.I0E60T Arachis hypogaea HOM05D006548 ORTHO05D008064 9.8e-81 303.5 165 100.0
arahy.Tifrunner.gnm1.ann1.C7NXRU Arachis hypogaea HOM05D006548 ORTHO05D008064 2.7e-78 295.4 165 97.6
Phvul.008G137800 Phaseolus vulgaris HOM05D006548 ORTHO05D008064 1.1e-63 246.9 166 77.7
Lj1g0008534 Lotus japonicus HOM05D006548 ORTHO05D008064 4.1e-63 245.0 166 79.5
VMungo1383G2587 Vigna mungo HOM05D006548 ORTHO05D008064 2.0e-62 242.7 166 76.5
Glyma.08G343100 Glycine max HOM05D006548 ORTHO05D008064 5.0e-61 238.0 166 73.5
Potri.002G239000 Populus trichocarpa HOM05D006548 ORTHO05D008064 1.1e-60 236.9 159 76.1
Psat3g151760 Pisum sativum HOM05D006548 ORTHO05D008064 1.9e-60 236.1 161 75.2
Lalb_Chr01g0021941 Lupinus albus HOM05D006548 ORTHO05D008064 1.2e-59 233.4 166 79.5
Sabra02G0182000 Salix brachista HOM05D006548 ORTHO05D008064 1.6e-59 233.0 159 75.5
TPR.G26806 Trifolium pratense HOM05D006548 ORTHO05D008064 3.6e-59 231.9 167 74.3
Glyma.18G153900 Glycine max HOM05D006548 ORTHO05D008064 1.8e-58 229.6 166 71.7
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 2.3e-58 229.2 162 73.5
Manes.12G059600 Manihot esculenta HOM05D006548 ORTHO05D008064 2.3e-58 229.2 163 72.4
Potri.014G177100 Populus trichocarpa HOM05D006548 ORTHO05D008064 5.2e-58 228.0 163 73.6
Sabra14G0135300 Salix brachista HOM05D006548 ORTHO05D008064 5.2e-58 228.0 163 73.6
TWI36G0698 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 5.2e-58 228.0 163 71.2
Ciclev10017030m.g Citrus clementina HOM05D006548 ORTHO05D008064 6.8e-58 227.6 164 73.8
PGR083G0463 Punica granatum HOM05D006548 ORTHO05D008064 6.8e-58 227.6 163 70.6
Ca_07442_v3 Cicer arietinum L. HOM05D006548 ORTHO05D008064 8.9e-58 227.3 161 70.8
Rhsim13G0053600 Rhododendron simsii HOM05D006548 ORTHO05D008064 8.9e-58 227.3 159 72.3
TWI75G1339 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 1.2e-57 226.9 163 70.6
Atru.chr6.3534 Acer truncatum HOM05D006548 ORTHO05D008064 2.6e-57 225.7 158 72.2
Hma1.2p1_0161F.1_g071510 Hydrangea macrophylla HOM05D006548 ORTHO05D008064 2.6e-57 225.7 163 77.3
vmacro02826 Vaccinium macrocarpon HOM05D006548 ORTHO05D008064 2.6e-57 225.7 158 71.5
RcHm_v2.0_Chr6g0282621 Rosa chinensis HOM05D006548 ORTHO05D008064 4.4e-57 224.9 160 70.6
TAR362G1118 Trochodendron aralioides HOM05D006548 ORTHO05D008064 9.8e-57 223.8 163 70.6
Manes.13G055300 Manihot esculenta HOM05D006548 ORTHO05D008064 1.3e-56 223.4 163 71.2
FAN27G0042 Fragaria x ananassa HOM05D006548 ORTHO05D008064 2.2e-56 222.6 160 69.4
FAN27G0390 Fragaria x ananassa HOM05D006548 ORTHO05D008064 2.2e-56 222.6 160 69.4
Nn3g18599 Nelumbo nucifera HOM05D006548 ORTHO05D008064 2.9e-56 222.2 163 71.8
FvH4_2g17650 Fragaria vesca HOM05D006548 ORTHO05D008064 6.4e-56 221.1 160 68.8
Lalb_Chr03g0040981 Lupinus albus HOM05D006548 ORTHO05D008064 8.3e-56 220.7 161 73.9
TWI18G0731 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 8.3e-56 220.7 163 69.3
Cfa010631 Carpinus fangiana HOM05D006548 ORTHO05D008064 2.4e-55 219.2 162 75.9
PSO017G5831 Papaver somniferum HOM05D006548 ORTHO05D008064 2.4e-55 219.2 163 70.6
CSS0032607 Camellia sinensis var. sinensis HOM05D006548 ORTHO05D008064 4.1e-55 218.4 164 77.4
COL.COLO4_06931 Corchorus olitorius HOM05D006548 ORTHO05D008064 5.4e-55 218.0 163 68.1
PSO675G8742 Papaver somniferum HOM05D006548 ORTHO05D008064 7.0e-55 217.6 163 69.3
FAN24G3284 Fragaria x ananassa HOM05D006548 ORTHO05D008064 1.2e-54 216.9 160 68.8
Medtr7g051230 Medicago truncatula HOM05D006548 ORTHO05D008064 4.6e-54 214.9 166 68.1
Haze_03573 Corylus avellana HOM05D006548 ORTHO05D008064 6.0e-54 214.5 165 75.2
Gohir.D07G202600 Gossypium hirsutum HOM05D006548 ORTHO05D008064 6.0e-54 214.5 163 68.1
Gorai.001G228000 Gossypium raimondii HOM05D006548 ORTHO05D008064 6.0e-54 214.5 163 68.1
Lj2P1115T39 Lonicera japonica HOM05D006548 ORTHO05D008064 6.0e-54 214.5 163 68.1
MBI08_g14954_MAGBIO Magnolia biondii HOM05D006659 ORTHO05D008064 6.0e-54 214.5 164 67.7
Gorai.007G160300 Gossypium raimondii HOM05D006548 ORTHO05D008064 7.8e-54 214.2 163 68.7
Aqoxy2G04054 Aquilegia oxysepala HOM05D006548 ORTHO05D008064 1.0e-53 213.8 161 66.5
CiPaw.13G058400 Carya illinoinensis HOM05D006548 ORTHO05D008064 1.0e-53 213.8 160 69.4
Gohir.A11G143200 Gossypium hirsutum HOM05D006548 ORTHO05D008064 1.0e-53 213.8 163 68.7
Ah.11g050830 Amaranthus hybridus HOM05D006548 ORTHO05D008064 1.3e-53 213.4 164 69.5
MSTRG.17967 Avicennia marina HOM05D006548 ORTHO05D008064 1.3e-53 213.4 163 68.1
Gohir.D11G149500 Gossypium hirsutum HOM05D006548 ORTHO05D008064 1.7e-53 213.0 159 69.2
Prupe.8G188900 Prunus persica HOM05D006548 ORTHO05D008064 3.0e-53 212.2 150 72.0
CSS0021481 Camellia sinensis var. sinensis HOM05D006548 ORTHO05D008064 5.0e-53 211.5 163 69.9
Thhalv10021677m.g Eutrema salsugineum HOM05D006548 ORTHO05D008064 1.1e-52 210.3 162 66.0
Peaxi162Scf00372g00041 Petunia axillaris HOM05D006548 ORTHO05D008064 1.1e-52 210.3 163 68.1
MD10G1150500 Malus domestica HOM05D006548 ORTHO05D008064 1.5e-52 209.9 150 72.7
CANSAT01G2941 Cannabis sativa HOM05D006548 ORTHO05D008064 1.9e-52 209.5 165 71.5
Sp3g06390 Schrenkiella parvula HOM05D006548 ORTHO05D008064 1.9e-52 209.5 162 65.4
Sed0004612 Sechium edule HOM05D006548 ORTHO05D008064 2.5e-52 209.1 163 69.9
AL3G18800 Arabidopsis lyrata HOM05D006548 ORTHO05D008064 3.3e-52 208.8 162 66.0
AT3G07480 Arabidopsis thaliana HOM05D006548 ORTHO05D008064 3.3e-52 208.8 162 66.0
Nitab4.5_0011925g0010 Nicotiana tabacum HOM05D006548 ORTHO05D008064 3.3e-52 208.8 163 68.7
Duzib211G0675 Durio zibethinus HOM05D006548 ORTHO05D008064 7.3e-52 207.6 164 64.6
Nn4g25121 Nelumbo nucifera HOM05D006548 ORTHO05D008064 7.3e-52 207.6 163 68.1
THA.LOC104819003 Tarenaya hassleriana HOM05D006548 ORTHO05D008064 7.3e-52 207.6 168 65.5
Nitab4.5_0002311g0090 Nicotiana tabacum HOM05D006548 ORTHO05D008064 9.5e-52 207.2 163 68.1
A05p40730 Brassica napus HOM05D006548 ORTHO05D008064 1.2e-51 206.8 162 67.3
BraA05t22804Z Brassica rapa HOM05D006548 ORTHO05D008064 1.2e-51 206.8 162 67.3
Carub.0003s0703 Capsella rubella HOM05D006548 ORTHO05D008064 1.6e-51 206.5 162 66.0
ClCG09G007890 Citrullus lanatus HOM05D006548 ORTHO05D008064 1.6e-51 206.5 160 68.8
BcaC05g29539 Brassica carinata HOM05D006548 ORTHO05D008064 2.1e-51 206.1 162 65.4
Nitab4.5_0001348g0010 Nicotiana tabacum HOM05D006548 ORTHO05D008064 2.1e-51 206.1 163 66.3
Nitab4.5_0007144g0040 Nicotiana tabacum HOM05D006548 ORTHO05D008064 2.1e-51 206.1 163 66.3
BolC5t34638H Brassica oleracea HOM05D006548 ORTHO05D008064 2.8e-51 205.7 162 66.7
Aa31LG5G18040 Aethionema arabicum HOM05D006548 ORTHO05D008064 3.6e-51 205.3 165 66.1
Duzib138G0849 Durio zibethinus HOM05D006548 ORTHO05D008064 3.6e-51 205.3 163 66.9
HanXRQChr08g0231851 Helianthus annuus HOM05D006548 ORTHO05D008064 6.2e-51 204.5 164 65.2
QL09p047049 Quercus lobata HOM05D006548 ORTHO05D008064 6.2e-51 204.5 156 66.0
C05p59840 Brassica napus HOM05D006548 ORTHO05D008064 8.1e-51 204.1 162 66.7
Cc01_g16030 Coffea canephora HOM05D006548 ORTHO05D008064 8.1e-51 204.1 159 66.0
CARHR082130 Cardamine hirsuta HOM05D006548 ORTHO05D008064 1.4e-50 203.4 165 63.6
AUR62028648 Chenopodium quinoa HOM05D006548 ORTHO05D008064 2.3e-50 202.6 163 63.8
DCAR_030798 Daucus carota HOM05D006548 ORTHO05D008064 3.1e-50 202.2 154 66.9
HPP92_002744 Vanilla planifolia HOM05D006548 ORTHO05D008064 3.1e-50 202.2 119 78.2
PGSC0003DMG400020639 Solanum tuberosum HOM05D006548 ORTHO05D008064 8.9e-50 200.7 118 78.8
Oeu051515.1 Olea europaea HOM05D006548 ORTHO05D008064 2.6e-49 199.1 159 63.5
Solyc06g007630.1 Solanum lycopersicum HOM05D006548 ORTHO05D008064 2.6e-49 199.1 118 78.0
Sopen06g002520 Solanum pennellii HOM05D006548 ORTHO05D008064 2.6e-49 199.1 118 78.0
SGA_v2.0_scaffold95G28706 Striga asiatica HOM05D006548 ORTHO05D008064 2.6e-49 199.1 159 63.5
BcaB03g14699 Brassica carinata HOM05D006548 ORTHO05D008064 4.4e-49 198.4 162 63.0
PGSC0003DMG400027686 Solanum tuberosum HOM05D006548 ORTHO05D008064 4.4e-49 198.4 163 65.0
CAN.G874.34 Capsicum annuum HOM05D006548 ORTHO05D008064 5.8e-49 198.0 163 65.6
ATR0824G029 Amborella trichopoda HOM05D006548 ORTHO05D008064 7.5e-49 197.6 151 66.2
MELO3C015717.2 Cucumis melo HOM05D006548 ORTHO05D008064 7.5e-49 197.6 165 64.2
ECA247G0922 Erigeron canadensis HOM05D006548 ORTHO05D008064 7.5e-49 197.6 164 62.2
Migut.N00670 Erythranthe guttata HOM05D006548 ORTHO05D008064 7.5e-49 197.6 164 61.6
Sopen06g034400 Solanum pennellii HOM05D006548 ORTHO05D008064 7.5e-49 197.6 163 65.0
GSVIVG01003797001 Vitis vinifera HOM05D006548 ORTHO05D008064 1.1e-47 193.7 138 65.2
Thecc.01G209700 Theobroma cacao HOM05D006548 ORTHO05D008064 6.0e-46 188.0 150 67.3
Os09g0514600 Oryza sativa ssp. japonica HOM05D006548 ORTHO05D008064 5.1e-45 184.9 118 74.6
unitig_61.g26345 Utricularia gibba HOM05D006548 ORTHO05D008064 1.1e-44 183.7 160 58.1
Lsat_1_v5_gn_9_16480 Lactuca sativa HOM05D006548 ORTHO05D008064 2.5e-44 182.6 169 59.8
Zm00001eb102720 Zea mays HOM05D006548 ORTHO05D008064 3.3e-44 182.2 162 61.7
Zm00001eb318350 Zea mays HOM05D006548 ORTHO05D008064 2.8e-43 179.1 150 67.3
CsaV3_7G027180 Cucumis sativus L. HOM05D006548 ORTHO05D008064 2.6e-41 172.6 152 62.5
EL10Ac5g10597 Beta vulgaris HOM05D006548 ORTHO05D008064 7.6e-41 171.0 148 67.6
Sc05g0001680 Simmondsia chinensis HOM05D006548 ORTHO05D008064 6.4e-40 167.9 105 74.3
Gohir.A07G196200 Gossypium hirsutum HOM05D006548 ORTHO05D008064 2.3e-37 159.5 91 82.4
Pp3c2_31000 Physcomitrium patens HOM05D006548 ORTHO05D008064 3.1e-34 149.1 119 56.3
Ciclev10013747m.g Citrus clementina HOM05D006548 ORTHO05D008064 2.7e-30 136.0 82 82.9
AagrBONN_evm.TU.Sc2ySwM_362.984 Anthoceros agrestis HOM05D006548 ORTHO05D008064 6.6e-29 131.3 160 42.5
CDE12G0850 Ceratophyllum demersum HOM05D006548 ORTHO05D008064 7.3e-28 127.9 74 73.0
Mapoly0085s0036 Marchantia polymorpha HOM05D006548 ORTHO05D008064 1.1e-26 124.0 167 44.3
BcaC05g29538 Brassica carinata HOM05D006548 ORTHO05D008064 2.4e-26 122.9 113 61.9
C03p67920 Brassica napus HOM05D006548 ORTHO05D008064 1.9e-23 113.2 89 61.8
BcaC01g02172 Brassica carinata HOM05D006548 ORTHO05D008064 9.3e-23 110.9 89 60.7
SEGI_16405 Sequoiadendron giganteum HOM05D002489 ORTHO05D002653 8.1e-19 97.8 106 57.5
Actinidia30005 Actinidia chinensis HOM05D006548 ORTHO05D008064 3.9e-13 79.0 165 38.8
CBR_g34314 Chara braunii HOM05D006548 ORTHO05D008064 5.1e-13 78.6 162 30.9
SMO119G0279 Selaginella moellendorffii HOM05D006548 ORTHO05D008064 1.9e-12 76.6 118 33.9
BolC3t19017H Brassica oleracea HOM05D006548 ORTHO05D008064 1.3e-11 73.9 48 66.7
BraA03t13759Z Brassica rapa HOM05D006548 ORTHO05D008064 2.8e-11 72.8 48 68.8
Mapoly0113s0043 Marchantia polymorpha HOM05D006548 ORTHO05D008064 1.2e-09 67.4 129 32.6


User provided reference genes

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