Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.HZTZ4X Arachis hypogaea HOM05D003956 ORTHO05D004850 1.2e-253 879.4 457 100.0
arahy.Tifrunner.gnm1.ann1.I3NY02 Arachis hypogaea HOM05D003956 ORTHO05D004850 1.3e-103 380.9 259 78.8
Glyma.17G020600 Glycine max HOM05D003956 ORTHO05D004850 4.6e-96 355.9 258 72.5
arahy.Tifrunner.gnm1.ann1.EQKV61 Arachis hypogaea HOM05D003956 ORTHO05D004850 1.7e-95 354.0 253 73.9
Glyma.07G253700 Glycine max HOM05D003956 ORTHO05D004850 1.7e-95 354.0 258 72.5
arahy.Tifrunner.gnm1.ann1.YQ8C5N Arachis hypogaea HOM05D003956 ORTHO05D004850 8.7e-95 351.7 253 73.5
VMungo1215G0684 Vigna mungo HOM05D003956 ORTHO05D004850 1.5e-94 350.9 258 71.7
Lalb_Chr13g0303991 Lupinus albus HOM05D003956 ORTHO05D004850 1.9e-94 350.5 258 71.3
Lj4g0014830 Lotus japonicus HOM05D003956 ORTHO05D004850 5.6e-94 349.0 258 70.9
Thecc.04G272600 Theobroma cacao HOM05D003956 ORTHO05D004850 8.1e-93 345.1 275 68.0
Ciclev10006837m.g Citrus clementina HOM05D003956 ORTHO05D004850 1.8e-92 344.0 258 70.5
Gohir.D10G162900 Gossypium hirsutum HOM05D003956 ORTHO05D004850 6.9e-92 342.0 264 69.7
Gorai.011G181800 Gossypium raimondii HOM05D003956 ORTHO05D004850 6.9e-92 342.0 264 69.7
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 1.2e-91 341.3 258 69.8
TPR.G28132 Trifolium pratense HOM05D003956 ORTHO05D004850 1.2e-91 341.3 258 69.4
Psat0ss7919g0200 Pisum sativum HOM05D003956 ORTHO05D004850 2.6e-91 340.1 258 69.0
ECA240G3955 Erigeron canadensis HOM05D003956 ORTHO05D004850 9.9e-91 338.2 258 69.4
Atru.chr4.2704 Acer truncatum HOM05D003956 ORTHO05D004850 1.3e-90 337.8 258 69.8
Duzib212G0153 Durio zibethinus HOM05D003956 ORTHO05D004850 1.3e-90 337.8 258 69.4
QL06p006231 Quercus lobata HOM05D003956 ORTHO05D004850 1.3e-90 337.8 276 65.6
Phvul.003G098200 Phaseolus vulgaris HOM05D003956 ORTHO05D004850 1.7e-90 337.4 258 69.8
TAR365G1004 Trochodendron aralioides HOM05D003956 ORTHO05D004850 1.7e-90 337.4 258 68.2
Haze_01011 Corylus avellana HOM05D003956 ORTHO05D004850 2.2e-90 337.0 259 68.0
Dinv44455 Davidia involucrata HOM05D003956 ORTHO05D004850 2.9e-90 336.7 258 69.0
MD13G1177400 Malus domestica HOM05D003956 ORTHO05D004850 2.9e-90 336.7 253 68.4
MELO3C006585.2 Cucumis melo HOM05D003956 ORTHO05D004850 3.8e-90 336.3 264 67.8
Lsat_1_v5_gn_5_51481 Lactuca sativa HOM05D003956 ORTHO05D004850 6.4e-90 335.5 259 67.6
PGR004G0287 Punica granatum HOM05D003956 ORTHO05D004850 6.4e-90 335.5 258 68.6
Actinidia23451 Actinidia chinensis HOM05D003956 ORTHO05D004850 8.4e-90 335.1 258 68.2
MD16G1179300 Malus domestica HOM05D003956 ORTHO05D004850 8.4e-90 335.1 253 68.4
SGA_v2.0_scaffold142G35643 Striga asiatica HOM05D003956 ORTHO05D004850 8.4e-90 335.1 253 69.2
MD16G1179400 Malus domestica HOM05D003956 ORTHO05D004850 1.1e-89 334.7 253 68.0
CsaV3_3G013930 Cucumis sativus L. HOM05D003956 ORTHO05D004850 1.4e-89 334.3 264 67.4
Duzib151G0049 Durio zibethinus HOM05D003956 ORTHO05D004850 1.4e-89 334.3 258 68.6
Oeu032695.1 Olea europaea HOM05D003956 ORTHO05D004850 1.4e-89 334.3 266 66.9
CiPaw.01G156600 Carya illinoinensis HOM05D003956 ORTHO05D004850 1.9e-89 334.0 266 67.3
Cpa.g.sc16.74 Carica papaya HOM05D003956 ORTHO05D004850 2.4e-89 333.6 264 67.0
Prupe.1G146600 Prunus persica HOM05D003956 ORTHO05D004850 2.4e-89 333.6 258 68.6
Manes.03G188300 Manihot esculenta HOM05D003956 ORTHO05D004850 3.2e-89 333.2 260 67.7
Sc25g0004550 Simmondsia chinensis HOM05D003956 ORTHO05D004850 7.1e-89 332.0 258 67.4
MD16G1179500 Malus domestica HOM05D003956 ORTHO05D004850 1.2e-88 331.3 253 68.0
ClCG05G005590 Citrullus lanatus HOM05D003956 ORTHO05D004850 1.6e-88 330.9 281 64.1
TWI09G0935 Tripterygium wilfordii HOM05D003956 ORTHO05D004850 1.6e-88 330.9 258 67.4
Actinidia32373 Actinidia chinensis HOM05D003956 ORTHO05D004850 2.1e-88 330.5 253 68.0
GSVIVG01017850001 Vitis vinifera HOM05D003956 ORTHO05D004850 2.1e-88 330.5 258 67.8
Nn3g21184 Nelumbo nucifera HOM05D003956 ORTHO05D004850 2.7e-88 330.1 260 65.8
Rhsim04G0213100 Rhododendron simsii HOM05D003956 ORTHO05D004850 2.7e-88 330.1 275 65.1
Aa31LG9G1910 Aethionema arabicum HOM05D003956 ORTHO05D004850 4.6e-88 329.3 264 66.7
CSS0033563 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 7.8e-88 328.6 264 66.3
THA.LOC104820228 Tarenaya hassleriana HOM05D003956 ORTHO05D004850 7.8e-88 328.6 264 65.9
CANSAT78G1736 Cannabis sativa HOM05D003956 ORTHO05D004850 1.0e-87 328.2 264 65.9
Peaxi162Scf00095g00414 Petunia axillaris HOM05D003956 ORTHO05D004850 1.3e-87 327.8 260 65.8
Lj3C806G12 Lonicera japonica HOM05D003956 ORTHO05D004850 1.7e-87 327.4 276 64.9
Sed0002405 Sechium edule HOM05D003956 ORTHO05D004850 1.7e-87 327.4 264 65.9
vmacro08238 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 2.3e-87 327.0 276 63.8
Actinidia40209 Actinidia chinensis HOM05D003956 ORTHO05D004850 3.0e-87 326.6 264 66.3
Cfa015539 Carpinus fangiana HOM05D003956 ORTHO05D004850 3.0e-87 326.6 264 66.3
Migut.G00280 Erythranthe guttata HOM05D003956 ORTHO05D004850 3.0e-87 326.6 264 65.5
Migut.G00282 Erythranthe guttata HOM05D003956 ORTHO05D004850 3.0e-87 326.6 264 65.5
Nitab4.5_0010477g0010 Nicotiana tabacum HOM05D003956 ORTHO05D004850 3.0e-87 326.6 260 66.2
Aqoxy2G03183 Aquilegia oxysepala HOM05D003956 ORTHO05D004850 3.9e-87 326.2 258 65.9
Nn4g26122 Nelumbo nucifera HOM05D003956 ORTHO05D004850 3.9e-87 326.2 258 65.5
CAN.G889.10 Capsicum annuum HOM05D003956 ORTHO05D004850 5.1e-87 325.9 260 66.2
Eucgr.H03642 Eucalyptus grandis HOM05D003956 ORTHO05D004850 5.1e-87 325.9 258 66.3
QL06p005921 Quercus lobata HOM05D003956 ORTHO05D004850 8.7e-87 325.1 264 65.9
Duzib151G0209 Durio zibethinus HOM05D003956 ORTHO05D004850 1.1e-86 324.7 275 64.0
Hund20662 Selenicereus undatus HOM05D003956 ORTHO05D004850 1.1e-86 324.7 269 64.7
Hma1.2p1_0511F.1_g169230 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 1.5e-86 324.3 259 67.6
Potri.010G027800 Populus trichocarpa HOM05D003956 ORTHO05D004850 2.5e-86 323.6 260 65.8
Solyc01g080460.3 Solanum lycopersicum HOM05D003956 ORTHO05D004850 4.3e-86 322.8 274 63.5
Sopen01g032260 Solanum pennellii HOM05D003956 ORTHO05D004850 4.3e-86 322.8 274 63.5
RcHm_v2.0_Chr4g0420131 Rosa chinensis HOM05D003956 ORTHO05D004850 5.6e-86 322.4 280 61.8
ATR0626G228 Amborella trichopoda HOM05D003956 ORTHO05D004850 7.3e-86 322.0 264 64.8
Cc03_g02730 Coffea canephora HOM05D003956 ORTHO05D004850 9.6e-86 321.6 264 65.2
PGSC0003DMG400032107 Solanum tuberosum HOM05D003956 ORTHO05D004850 9.6e-86 321.6 274 63.5
FvH4_4g16670 Fragaria vesca HOM05D003956 ORTHO05D004850 1.6e-85 320.9 280 61.4
FAN12G0499 Fragaria x ananassa HOM05D003956 ORTHO05D004850 1.6e-85 320.9 280 61.4
FAN12G2270 Fragaria x ananassa HOM05D003956 ORTHO05D004850 1.6e-85 320.9 280 61.4
CSS0013368 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 2.1e-85 320.5 258 64.7
FAN17G1489 Fragaria x ananassa HOM05D003956 ORTHO05D004850 2.1e-85 320.5 274 62.0
FAN22G1243 Fragaria x ananassa HOM05D003956 ORTHO05D004850 2.1e-85 320.5 258 64.3
MD13G1177500 Malus domestica HOM05D003956 ORTHO05D004850 2.1e-85 320.5 287 60.6
Sabra10G0012900 Salix brachista HOM05D003956 ORTHO05D004850 2.1e-85 320.5 257 65.8
FAN07G1911 Fragaria x ananassa HOM05D003956 ORTHO05D004850 2.8e-85 320.1 274 62.0
MSTRG.10031 Avicennia marina HOM05D003956 ORTHO05D004850 4.8e-85 319.3 266 63.5
Eucgr.B01186 Eucalyptus grandis HOM05D003956 ORTHO05D004850 4.8e-85 319.3 275 62.5
Thecc.04G272800 Theobroma cacao HOM05D003956 ORTHO05D004850 1.4e-84 317.8 258 65.5
MSTRG.10030 Avicennia marina HOM05D003956 ORTHO05D004850 1.8e-84 317.4 266 63.5
Nitab4.5_0000059g0230 Nicotiana tabacum HOM05D003956 ORTHO05D004850 6.9e-84 315.5 272 62.9
CDE08G0632 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 9.0e-84 315.1 266 63.2
unitig_749.g14056 Utricularia gibba HOM05D003956 ORTHO05D004850 9.0e-84 315.1 260 62.3
Psat4g028880 Pisum sativum HOM05D003956 ORTHO05D004850 4.5e-83 312.8 258 62.4
Rhsim02G0016700 Rhododendron simsii HOM05D003956 ORTHO05D004850 4.5e-83 312.8 253 64.8
PGR031G3666 Punica granatum HOM05D003956 ORTHO05D004850 5.8e-83 312.4 260 63.8
SalBow2G1708 Salvia bowleyana HOM05D003956 ORTHO05D004850 9.9e-83 311.6 255 64.3
vmacro15287 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 9.9e-83 311.6 265 63.4
Sp7g13780 Schrenkiella parvula HOM05D003956 ORTHO05D004850 1.3e-82 311.2 264 63.3
AL7G39990 Arabidopsis lyrata HOM05D003956 ORTHO05D004850 2.2e-82 310.5 258 63.2
CSS0018237 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 2.2e-82 310.5 259 64.5
AagrBONN_evm.TU.Sc2ySwM_228.3276 Anthoceros agrestis HOM05D003956 ORTHO05D004850 3.8e-82 309.7 264 62.9
AT4G15530 Arabidopsis thaliana HOM05D003956 ORTHO05D004850 4.9e-82 309.3 258 63.2
CARHR222330 Cardamine hirsuta HOM05D003956 ORTHO05D004850 6.4e-82 308.9 260 62.3
PSO170G3340 Papaver somniferum HOM05D003956 ORTHO05D004850 1.9e-81 307.4 280 59.3
SMO351G0542 Selaginella moellendorffii HOM05D003956 ORTHO05D004850 1.9e-81 307.4 258 62.4
Thhalv10024330m.g Eutrema salsugineum HOM05D003956 ORTHO05D004850 7.1e-81 305.4 258 63.2
PSO302G0065 Papaver somniferum HOM05D003956 ORTHO05D004850 7.1e-81 305.4 280 58.9
Zm00001eb287770 Zea mays HOM05D003956 ORTHO05D004850 7.1e-81 305.4 258 62.4
Carub.0007s2635 Capsella rubella HOM05D003956 ORTHO05D004850 9.3e-81 305.1 280 60.0
Hund19586 Selenicereus undatus HOM05D003956 ORTHO05D004850 9.3e-81 305.1 274 59.5
Os05g0405000 Oryza sativa ssp. japonica HOM05D003956 ORTHO05D004850 1.2e-80 304.7 258 62.0
Zm00001eb349810 Zea mays HOM05D003956 ORTHO05D004850 6.0e-80 302.4 258 61.6
Pp3c5_22540 Physcomitrium patens HOM05D003956 ORTHO05D004850 1.0e-79 301.6 258 60.9
BcaC06g32940 Brassica carinata HOM05D003956 ORTHO05D004850 1.3e-79 301.2 280 58.9
CDE02G0811 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 1.3e-79 301.2 283 58.7
A03p49170 Brassica napus HOM05D003956 ORTHO05D004850 3.0e-79 300.1 280 58.9
BraA03t14011Z Brassica rapa HOM05D003956 ORTHO05D004850 3.0e-79 300.1 280 58.9
Mapoly0009s0124 Marchantia polymorpha HOM05D003956 ORTHO05D004850 3.9e-79 299.7 258 61.6
BcaC06g33414 Brassica carinata HOM05D003956 ORTHO05D004850 6.7e-79 298.9 263 61.2
C07p47210 Brassica napus HOM05D003956 ORTHO05D004850 1.5e-78 297.7 280 58.6
BolC7t45243H Brassica oleracea HOM05D003956 ORTHO05D004850 1.5e-78 297.7 280 58.6
BcaC09g50248 Brassica carinata HOM05D003956 ORTHO05D004850 2.5e-78 297.0 258 60.9
BolC1t02682H Brassica oleracea HOM05D003956 ORTHO05D004850 2.5e-78 297.0 258 60.9
BcaNung00266 Brassica carinata HOM05D003956 ORTHO05D004850 3.3e-78 296.6 258 60.9
arahy.Tifrunner.gnm1.ann1.DC6B04 Arachis hypogaea HOM05D003956 ORTHO05D004850 4.3e-78 296.2 259 64.9
C01p27430 Brassica napus HOM05D003956 ORTHO05D004850 4.3e-78 296.2 258 60.9
A01p22040 Brassica napus HOM05D003956 ORTHO05D004850 5.6e-78 295.8 258 60.5
BraA01t02110Z Brassica rapa HOM05D003956 ORTHO05D004850 5.6e-78 295.8 258 60.5
arahy.Tifrunner.gnm1.ann1.9WT78J Arachis hypogaea HOM05D003956 ORTHO05D004850 4.0e-76 289.7 253 65.2
arahy.Tifrunner.gnm1.ann1.989M5Y Arachis hypogaea HOM05D003956 ORTHO05D004850 9.0e-76 288.5 207 75.4
BcaC09g50243 Brassica carinata HOM05D003956 ORTHO05D004850 2.0e-75 287.3 264 58.3
DCAR_023283 Daucus carota HOM05D003956 ORTHO05D004850 5.8e-75 285.8 253 61.3
AUR62035456 Chenopodium quinoa HOM05D003956 ORTHO05D004850 7.1e-73 278.9 234 66.2
unitig_26.g8936 Utricularia gibba HOM05D003956 ORTHO05D004850 4.6e-72 276.2 228 62.7
Medtr4g118355 Medicago truncatula HOM05D003956 ORTHO05D004850 5.6e-70 269.2 215 67.9
arahy.Tifrunner.gnm1.ann1.7LSJ4G Arachis hypogaea HOM05D003956 ORTHO05D004850 6.2e-69 265.8 210 70.5
Gohir.A10G105700 Gossypium hirsutum HOM05D003956 ORTHO05D004850 1.2e-67 261.5 189 70.9
MCO12G211 Micromonas commoda HOM05D003956 ORTHO05D004850 1.0e-66 258.5 274 53.6
Cre17.g734548 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 9.3e-65 251.9 258 54.3
Ah.11g043140 Amaranthus hybridus HOM05D003956 ORTHO05D004850 6.7e-63 245.7 255 54.1
EL10Ac1g01820 Beta vulgaris HOM05D003956 ORTHO05D004850 1.5e-62 244.6 270 54.8
SGA_v2.0_scaffold86G26866 Striga asiatica HOM05D003956 ORTHO05D004850 4.3e-62 243.0 205 63.9
AUR62034949 Chenopodium quinoa HOM05D003956 ORTHO05D004850 5.3e-60 236.1 253 54.9
SGA_v2.0_scaffold86G26865 Striga asiatica HOM05D003956 ORTHO05D004850 8.8e-55 218.8 253 52.2
Cre10.g424750 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 3.4e-51 206.8 261 46.4
MCO01G687 Micromonas commoda HOM05D003956 ORTHO05D004850 3.2e-49 200.3 263 43.0
Hma1.2p1_2025F.1_g311530 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 2.6e-35 154.1 266 42.5
CBR_g50184 Chara braunii HOM05D003956 ORTHO05D004850 1.5e-33 148.3 143 54.5
arahy.Tifrunner.gnm1.ann1.G5444S Arachis hypogaea HOM05D003956 ORTHO05D004850 3.1e-28 130.6 82 80.5
arahy.Tifrunner.gnm1.ann1.S9XVUY Arachis hypogaea HOM05D003956 ORTHO05D004850 4.5e-27 126.7 111 65.8
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 4.7e-24 116.7 101 58.4
TPR.G28133 Trifolium pratense HOM05D003956 ORTHO05D004850 7.0e-20 102.8 109 56.0
AUR62034328 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.9e-17 94.7 101 56.4
arahy.Tifrunner.gnm1.ann1.57CL3B Arachis hypogaea HOM05D003956 ORTHO05D004850 9.8e-06 55.8 48 60.4


User provided reference genes

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