Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.HZ123V Arachis hypogaea HOM05D006189 ORTHO05D007765 4.4e-161 571.2 291 100.0
arahy.Tifrunner.gnm1.ann1.4Q5DUA Arachis hypogaea HOM05D006189 ORTHO05D007765 1.8e-154 549.3 288 97.6
Lalb_Chr18g0058331 Lupinus albus HOM05D006189 ORTHO05D007765 2.3e-133 479.2 282 84.8
Ca_00927_v3 Cicer arietinum L. HOM05D006189 ORTHO05D007765 2.4e-130 469.2 287 83.3
Medtr2g031990 Medicago truncatula HOM05D006189 ORTHO05D007765 4.0e-130 468.4 280 82.9
TPR.G8020 Trifolium pratense HOM05D006189 ORTHO05D007765 6.4e-128 461.1 280 83.2
Glyma.15G135500 Glycine max HOM05D006189 ORTHO05D007765 2.1e-126 456.1 286 79.4
Lj6g0027485 Lotus japonicus HOM05D006189 ORTHO05D007765 3.0e-125 452.2 280 81.1
Phvul.006G123300 Phaseolus vulgaris HOM05D006189 ORTHO05D007765 5.1e-125 451.4 287 79.1
arahy.Tifrunner.gnm1.ann1.5RXD5Y Arachis hypogaea HOM05D006189 ORTHO05D007765 1.9e-124 449.5 288 83.0
VMungo0540G1817 Vigna mungo HOM05D006189 ORTHO05D007765 3.3e-124 448.7 287 79.1
COL.COLO4_26883 Corchorus olitorius HOM05D006189 ORTHO05D007765 4.8e-123 444.9 291 75.3
Potri.011G157300 Populus trichocarpa HOM05D006189 ORTHO05D007765 1.8e-122 443.0 289 74.7
QL04p073052 Quercus lobata HOM05D006189 ORTHO05D007765 1.8e-122 443.0 287 75.6
TAR626G0344 Trochodendron aralioides HOM05D006189 ORTHO05D007765 3.8e-120 435.3 269 77.3
CiPaw.09G147800 Carya illinoinensis HOM05D006189 ORTHO05D007765 6.5e-120 434.5 293 73.4
Manes.14G126200 Manihot esculenta HOM05D006189 ORTHO05D007765 3.2e-119 432.2 282 74.1
Thecc.06G008600 Theobroma cacao HOM05D006189 ORTHO05D007765 1.2e-118 430.3 289 74.0
Duzib235G1073 Durio zibethinus HOM05D006189 ORTHO05D007765 2.7e-118 429.1 273 75.5
Atru.chr10.686 Acer truncatum HOM05D006189 ORTHO05D007765 4.6e-118 428.3 290 73.8
CSS0031891 Camellia sinensis var. sinensis HOM05D006189 ORTHO05D007765 2.3e-117 426.0 266 76.3
Cfa000769 Carpinus fangiana HOM05D006189 ORTHO05D007765 3.0e-117 425.6 279 74.9
Haze_05946 Corylus avellana HOM05D006189 ORTHO05D007765 3.0e-117 425.6 262 77.5
Migut.M01928 Erythranthe guttata HOM05D006189 ORTHO05D007765 3.9e-117 425.2 268 76.9
Prupe.4G101000 Prunus persica HOM05D006189 ORTHO05D007765 5.1e-117 424.9 291 73.9
Actinidia29243 Actinidia chinensis HOM05D006189 ORTHO05D007765 6.7e-117 424.5 266 75.9
GSVIVG01021771001 Vitis vinifera HOM05D006189 ORTHO05D007765 8.7e-117 424.1 291 71.8
vmacro03465 Vaccinium macrocarpon HOM05D006189 ORTHO05D007765 4.3e-116 421.8 256 80.1
FAN21G1916 Fragaria x ananassa HOM05D006189 ORTHO05D007765 1.3e-115 420.2 290 72.4
RcHm_v2.0_Chr5g0018051 Rosa chinensis HOM05D006189 ORTHO05D007765 1.3e-115 420.2 287 73.9
MBI18_g27139_MAGBIO Magnolia biondii HOM05D006189 ORTHO05D007765 1.6e-115 419.9 264 76.1
ClCG03G008560 Citrullus lanatus HOM05D006189 ORTHO05D007765 2.2e-115 419.5 292 71.2
Gohir.D02G105200 Gossypium hirsutum HOM05D006189 ORTHO05D007765 2.2e-115 419.5 264 76.1
PSO541G1785 Papaver somniferum HOM05D006189 ORTHO05D007765 2.8e-115 419.1 291 72.2
FvH4_3g11150 Fragaria vesca HOM05D006189 ORTHO05D007765 4.8e-115 418.3 290 72.4
Rhsim13G0125300 Rhododendron simsii HOM05D006189 ORTHO05D007765 1.1e-114 417.2 294 71.1
Sed0000978 Sechium edule HOM05D006189 ORTHO05D007765 1.1e-114 417.2 291 72.2
Ciclev10016184m.g Citrus clementina HOM05D006189 ORTHO05D007765 1.8e-114 416.4 265 77.0
MELO3C002872.2 Cucumis melo HOM05D006189 ORTHO05D007765 1.8e-114 416.4 292 71.9
Dinv06442 Davidia involucrata HOM05D006189 ORTHO05D007765 1.8e-114 416.4 265 76.2
Eucgr.D01017 Eucalyptus grandis HOM05D006189 ORTHO05D007765 2.4e-114 416.0 295 70.2
FAN16G1953 Fragaria x ananassa HOM05D006189 ORTHO05D007765 2.4e-114 416.0 290 71.7
MD10G1243100 Malus domestica HOM05D006189 ORTHO05D007765 2.4e-114 416.0 291 72.2
ECA234G0756 Erigeron canadensis HOM05D006189 ORTHO05D007765 3.1e-114 415.6 253 78.7
PSO675G7004 Papaver somniferum HOM05D006189 ORTHO05D007765 3.1e-114 415.6 305 69.2
PGSC0003DMG400028033 Solanum tuberosum HOM05D006189 ORTHO05D007765 3.1e-114 415.6 264 73.9
DCAR_005641 Daucus carota HOM05D006189 ORTHO05D007765 6.9e-114 414.5 263 75.7
Gorai.005G119400 Gossypium raimondii HOM05D006189 ORTHO05D007765 6.9e-114 414.5 264 75.4
Sabra11G0142800 Salix brachista HOM05D006189 ORTHO05D007765 6.9e-114 414.5 354 61.6
Nitab4.5_0002819g0010 Nicotiana tabacum HOM05D006189 ORTHO05D007765 9.0e-114 414.1 291 70.1
CAN.G565.1 Capsicum annuum HOM05D006189 ORTHO05D007765 1.2e-113 413.7 256 75.4
Nitab4.5_0010673g0010 Nicotiana tabacum HOM05D006189 ORTHO05D007765 1.5e-113 413.3 293 68.9
FAN25G1707 Fragaria x ananassa HOM05D006189 ORTHO05D007765 3.4e-113 412.1 291 72.2
HanXRQChr10g0296271 Helianthus annuus HOM05D006189 ORTHO05D007765 5.9e-113 411.4 281 70.5
Nn7g37778 Nelumbo nucifera HOM05D006189 ORTHO05D007765 7.7e-113 411.0 277 71.8
SalBow8G0058 Salvia bowleyana HOM05D006189 ORTHO05D007765 1.0e-112 410.6 268 72.8
SalBow8G0354 Salvia bowleyana HOM05D006189 ORTHO05D007765 1.0e-112 410.6 268 72.8
Oeu063153.2 Olea europaea HOM05D006189 ORTHO05D007765 2.2e-112 409.5 272 72.4
Thhalv10025851m.g Eutrema salsugineum HOM05D006189 ORTHO05D007765 3.8e-112 408.7 284 71.1
Solyc02g023990.3 Solanum lycopersicum HOM05D006189 ORTHO05D007765 3.8e-112 408.7 264 72.7
TWI38G1238 Tripterygium wilfordii HOM05D006189 ORTHO05D007765 5.0e-112 408.3 277 71.8
Sopen02g006700 Solanum pennellii HOM05D006189 ORTHO05D007765 8.5e-112 407.5 282 70.2
Aa31LG6G2850 Aethionema arabicum HOM05D006189 ORTHO05D007765 1.4e-111 406.8 265 74.7
A01p12170 Brassica napus HOM05D006189 ORTHO05D007765 1.4e-111 406.8 282 71.3
Cc09_g07340 Coffea canephora HOM05D006189 ORTHO05D007765 1.9e-111 406.4 276 71.4
Glyma.09G029700 Glycine max HOM05D006189 ORTHO05D007765 2.5e-111 406.0 240 81.7
AL7G33390 Arabidopsis lyrata HOM05D006189 ORTHO05D007765 3.2e-111 405.6 265 74.3
Carub.0007s2069 Capsella rubella HOM05D006189 ORTHO05D007765 3.2e-111 405.6 265 74.3
BolC1t01404H Brassica oleracea HOM05D006189 ORTHO05D007765 4.2e-111 405.2 282 71.3
C01p14490 Brassica napus HOM05D006189 ORTHO05D007765 5.5e-111 404.8 282 71.3
Sc24g0002570 Simmondsia chinensis HOM05D006189 ORTHO05D007765 5.5e-111 404.8 283 70.0
BraA01t01159Z Brassica rapa HOM05D006189 ORTHO05D007765 7.2e-111 404.4 282 70.9
BcaC09g51315 Brassica carinata HOM05D006189 ORTHO05D007765 1.2e-110 403.7 282 70.9
MSTRG.16306 Avicennia marina HOM05D006189 ORTHO05D007765 2.1e-110 402.9 270 71.1
BcaNung04155 Brassica carinata HOM05D006189 ORTHO05D007765 3.6e-110 402.1 284 70.4
EL10Ac9g22332 Beta vulgaris HOM05D006189 ORTHO05D007765 1.0e-109 400.6 266 71.8
Sp7g18830 Schrenkiella parvula HOM05D006189 ORTHO05D007765 1.8e-109 399.8 284 70.8
SGA_v2.0_scaffold1G00293 Striga asiatica HOM05D006189 ORTHO05D007765 3.9e-109 398.7 259 73.4
AT4G20760 Arabidopsis thaliana HOM05D006189 ORTHO05D007765 1.7e-107 393.3 265 72.1
Lsat_1_v5_gn_5_148401 Lactuca sativa HOM05D006189 ORTHO05D007765 2.8e-107 392.5 281 67.6
Cpa.g.c30210.1 Carica papaya HOM05D006189 ORTHO05D007765 2.0e-105 386.3 240 76.7
Gohir.A03G088500 Gossypium hirsutum HOM05D006189 ORTHO05D007765 2.2e-104 382.9 262 72.1
CANSAT35G1316 Cannabis sativa HOM05D006189 ORTHO05D007765 2.5e-103 379.4 289 68.9
AUR62030247 Chenopodium quinoa HOM05D006189 ORTHO05D007765 4.2e-103 378.6 240 75.0
AUR62027598 Chenopodium quinoa HOM05D006189 ORTHO05D007765 5.5e-103 378.3 240 75.0
Os12g0609500 Oryza sativa ssp. japonica HOM05D006189 ORTHO05D007765 1.2e-102 377.1 282 66.7
Hma1.2p1_1192F.1_g265520 Hydrangea macrophylla HOM05D006189 ORTHO05D007765 1.8e-101 373.2 267 69.3
Hund17667 Selenicereus undatus HOM05D006189 ORTHO05D007765 1.8e-101 373.2 278 68.3
CDE02G4463 Ceratophyllum demersum HOM05D006189 ORTHO05D007765 3.3e-100 369.0 264 68.2
ATR0763G139 Amborella trichopoda HOM05D006189 ORTHO05D007765 5.7e-100 368.2 243 72.0
CsaV3_1G037630 Cucumis sativus L. HOM05D006189 ORTHO05D007765 8.2e-99 364.4 292 66.1
AagrBONN_evm.TU.Sc2ySwM_228.1434 Anthoceros agrestis HOM05D006189 ORTHO05D007765 3.1e-98 362.5 273 67.0
SEGI_07893 Sequoiadendron giganteum HOM05D006189 ORTHO05D007765 3.1e-98 362.5 265 64.2
Ah.14g085060 Amaranthus hybridus HOM05D006189 ORTHO05D007765 3.8e-96 355.5 262 67.6
arahy.Tifrunner.gnm1.ann1.FHXA43 Arachis hypogaea HOM05D006189 ORTHO05D007765 1.1e-95 354.0 292 68.5
Mapoly0158s0008 Marchantia polymorpha HOM05D006189 ORTHO05D007765 1.0e-93 347.4 260 63.5
SMO116G0118 Selaginella moellendorffii HOM05D006189 ORTHO05D007765 3.3e-92 342.4 257 65.8
Psat1g164320 Pisum sativum HOM05D006189 ORTHO05D007765 1.7e-91 340.1 190 86.3
Pp3c10_7720 Physcomitrium patens HOM05D006189 ORTHO05D007765 4.1e-90 335.5 259 62.9
Lj2A337T31 Lonicera japonica HOM05D006189 ORTHO05D007765 1.9e-87 326.6 283 60.8
TPR.G21393 Trifolium pratense HOM05D006189 ORTHO05D007765 1.9e-87 326.6 188 84.0
PSO541G6221 Papaver somniferum HOM05D006189 ORTHO05D007765 4.0e-85 318.9 225 69.8
Aqoxy1G01513 Aquilegia oxysepala HOM05D006189 ORTHO05D007765 5.2e-77 292.0 258 59.7
CARHR227300 Cardamine hirsuta HOM05D006189 ORTHO05D007765 3.6e-70 269.2 158 79.1
Peaxi162Scf00395g00112 Petunia axillaris HOM05D006189 ORTHO05D007765 1.4e-69 267.3 265 53.2
HPP92_015693 Vanilla planifolia HOM05D006189 ORTHO05D007765 2.4e-66 256.5 146 82.9
MCO04G545 Micromonas commoda HOM05D006189 ORTHO05D007765 6.1e-62 241.9 257 49.4
Zm00001eb031410 Zea mays HOM05D006189 ORTHO05D007765 8.9e-61 238.0 194 61.9
Hma1.2p1_1192F.1_g265540 Hydrangea macrophylla HOM05D006189 ORTHO05D007765 1.5e-60 237.3 130 83.1
PRCOL_00006144 Prasinoderma coloniale HOM05D006189 ORTHO05D007765 4.4e-52 209.1 262 45.0
unitig_92.g28182 Utricularia gibba HOM05D006189 ORTHO05D007765 5.4e-50 202.2 188 59.0
CDE02G2479 Ceratophyllum demersum HOM05D006189 ORTHO05D007765 2.1e-49 200.3 128 72.7
HPP92_015692 Vanilla planifolia HOM05D006189 ORTHO05D007765 7.8e-33 145.2 106 65.1
TPR.G8023 Trifolium pratense HOM05D006189 ORTHO05D007765 7.6e-28 128.6 97 69.1
MCO09G279 Micromonas commoda HOM05D006189 ORTHO05D007765 1.9e-23 114.0 215 35.3
PRCOL_00004206 Prasinoderma coloniale HOM05D006189 ORTHO05D007765 1.4e-21 107.8 318 28.6
MCO08G164 Micromonas commoda HOM05D006189 ORTHO05D007765 5.3e-21 105.9 277 29.6
PRCOL_00006510 Prasinoderma coloniale HOM05D006189 ORTHO05D007765 2.7e-17 93.6 274 28.8
Cre12.g549852 Chlamydomonas reinhardtii HOM05D006189 ORTHO05D007765 1.0e-16 91.7 274 29.9
QL04p073045 Quercus lobata HOM05D006189 ORTHO05D007765 8.7e-16 88.6 51 82.4
Cre16.g675450 Chlamydomonas reinhardtii HOM05D006189 ORTHO05D007765 1.8e-13 80.9 275 26.9
MCO03G468 Micromonas commoda HOM05D006189 ORTHO05D007765 1.8e-13 80.9 250 29.6
MCO02G010 Micromonas commoda HOM05D006189 ORTHO05D007765 3.4e-12 76.6 267 24.7
Potri.007G007300 Populus trichocarpa HOM05D002673 ORTHO05D002766 1.3e-11 74.7 246 26.0
PRCOL_00002389 Prasinoderma coloniale HOM05D006189 ORTHO05D007765 1.4e-10 71.2 212 27.4
SpUn1298_0010 Schrenkiella parvula HOM05D006189 ORTHO05D371427 1.9e-10 70.9 209 26.3
CDE02G4223 Ceratophyllum demersum HOM05D006189 ORTHO05D007765 4.2e-10 69.7 56 55.4
Cfa026333 Carpinus fangiana HOM05D006189 ORTHO05D007765 1.2e-09 68.2 269 26.0
Cfa026914 Carpinus fangiana HOM05D000326 ORTHO05D125651 1.2e-09 68.2 262 27.1
MSTRG.20810 Avicennia marina HOM05D000402 ORTHO05D000263 1.6e-09 67.8 254 27.6
CANSAT01G3180 Cannabis sativa HOM05D002673 ORTHO05D002766 2.7e-09 67.0 218 26.1
Cfa027186 Carpinus fangiana HOM05D001208 ORTHO05D002766 4.6e-09 66.2 209 26.8
COL.COLO4_11618 Corchorus olitorius HOM05D002673 ORTHO05D002766 7.9e-09 65.5 232 25.4
TAR376G0676 Trochodendron aralioides HOM05D002673 ORTHO05D002766 1.3e-08 64.7 248 25.0
Cpa.g.sc673.1 Carica papaya HOM05D002673 ORTHO05D002766 1.8e-08 64.3 209 24.9
ECA248G1442 Erigeron canadensis HOM05D001208 ORTHO05D001593 2.3e-08 63.9 232 26.7
Gorai.001G170400 Gossypium raimondii HOM05D000402 ORTHO05D000263 2.3e-08 63.9 259 28.2
CDE02G4483 Ceratophyllum demersum HOM05D000182 ORTHO05D000112 5.1e-08 62.8 236 23.3
Sed0012472 Sechium edule HOM05D000904 ORTHO05D005281 6.7e-08 62.4 204 23.5
QL06p033478 Quercus lobata HOM05D002673 ORTHO05D002766 8.7e-08 62.0 250 28.4
ECA234G4786 Erigeron canadensis HOM05D000182 ORTHO05D000112 1.1e-07 61.6 233 24.9
Gohir.D07G149000 Gossypium hirsutum HOM05D000402 ORTHO05D000263 1.1e-07 61.6 257 28.0
Glyma.09G279800 Glycine max HOM05D000182 ORTHO05D000112 1.5e-07 61.2 211 27.0
SMO239G0064 Selaginella moellendorffii HOM05D000252 ORTHO05D000307 1.5e-07 61.2 241 24.9
Dinv08911 Davidia involucrata HOM05D000182 ORTHO05D000112 1.9e-07 60.8 222 26.1
Manes.11G164900 Manihot esculenta HOM05D000182 ORTHO05D000112 1.9e-07 60.8 214 27.1
Thecc.01G076600 Theobroma cacao HOM05D002673 ORTHO05D002766 1.9e-07 60.8 203 26.6
Glyma.18G209200 Glycine max HOM05D000182 ORTHO05D000112 2.5e-07 60.5 211 27.0
Aa31LG11G1660 Aethionema arabicum HOM05D000402 ORTHO05D000263 3.3e-07 60.1 163 33.7
Gohir.A07G143200 Gossypium hirsutum HOM05D000402 ORTHO05D000263 3.3e-07 60.1 250 28.8
Actinidia17962 Actinidia chinensis HOM05D001208 ORTHO05D001593 4.3e-07 59.7 213 26.8
VMungo1383G1909 Vigna mungo HOM05D002673 ORTHO05D002766 7.4e-07 58.9 225 28.0
QL07p011698 Quercus lobata HOM05D001208 ORTHO05D001593 9.6e-07 58.5 243 26.3
SMO196G0047 Selaginella moellendorffii HOM05D000252 ORTHO05D000307 9.6e-07 58.5 218 25.7
Duzib264G0564 Durio zibethinus HOM05D002673 ORTHO05D002766 1.3e-06 58.2 203 24.6
Phvul.001G249900 Phaseolus vulgaris HOM05D002673 ORTHO05D002766 1.3e-06 58.2 225 27.6
CiPaw.13G088600 Carya illinoinensis HOM05D000326 ORTHO05D000312 2.8e-06 57.0 236 28.0
Duzib192G0673 Durio zibethinus HOM05D000904 ORTHO05D005281 2.8e-06 57.0 240 22.9
Sabra04G0135100 Salix brachista HOM05D000182 ORTHO05D000112 2.8e-06 57.0 184 25.5
SMO347G0650 Selaginella moellendorffii HOM05D000402 ORTHO05D000263 2.8e-06 57.0 134 32.8
SEGI_32428 Sequoiadendron giganteum HOM05D000402 ORTHO05D000263 2.8e-06 57.0 86 40.7
Haze_25004 Corylus avellana HOM05D002673 ORTHO05D002766 3.7e-06 56.6 209 27.3
SMO049G0001 Selaginella moellendorffii HOM05D000402 ORTHO05D000263 4.8e-06 56.2 222 26.1
TWI77G1039 Tripterygium wilfordii HOM05D002673 ORTHO05D002766 4.8e-06 56.2 182 30.8
BcaC01g02439 Brassica carinata HOM05D000402 ORTHO05D000263 6.2e-06 55.8 89 38.2
C03p65280 Brassica napus HOM05D000402 ORTHO05D000263 6.2e-06 55.8 89 38.2
BolC3t18781H Brassica oleracea HOM05D000402 ORTHO05D000263 6.2e-06 55.8 89 38.2
MELO3C009506.2 Cucumis melo HOM05D000182 ORTHO05D000112 6.2e-06 55.8 246 26.8
Peaxi162Scf00204g00614 Petunia axillaris HOM05D002673 ORTHO05D002766 6.2e-06 55.8 242 26.9
PGR031G3097 Punica granatum HOM05D000182 ORTHO05D000112 6.2e-06 55.8 200 26.0
Atru.chr8.2038 Acer truncatum HOM05D000326 ORTHO05D000312 8.2e-06 55.5 247 25.1
HanXRQChr01g0008551 Helianthus annuus HOM05D001208 ORTHO05D001593 8.2e-06 55.5 248 26.6
Manes.12G139300 Manihot esculenta HOM05D002673 ORTHO05D002766 8.2e-06 55.5 240 28.3


User provided reference genes

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