Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.HYZ2KB Arachis hypogaea HOM05D006138 ORTHO05D007778 5.5e-226 787.3 409 100.0
arahy.Tifrunner.gnm1.ann1.3M33GA Arachis hypogaea HOM05D006138 ORTHO05D007778 1.7e-222 775.8 409 98.3
Lj6g0009885 Lotus japonicus HOM05D006138 ORTHO05D007778 2.3e-115 419.9 401 59.4
Glyma.11G255500 Glycine max HOM05D006138 ORTHO05D007778 9.1e-112 407.9 403 58.3
Ca_16395_v3 Cicer arietinum L. HOM05D006138 ORTHO05D007778 2.5e-109 399.8 393 57.8
VMungo1383G1063 Vigna mungo HOM05D000127 ORTHO05D000243 3.8e-102 375.9 395 54.9
Phvul.001G267400 Phaseolus vulgaris HOM05D006138 ORTHO05D007778 1.1e-101 374.4 387 54.5
Psat5g102360 Pisum sativum HOM05D006138 ORTHO05D007778 2.7e-100 369.8 403 53.6
CiPaw.02G065100 Carya illinoinensis HOM05D006138 ORTHO05D007778 2.1e-92 343.6 400 46.8
Cfa014952 Carpinus fangiana HOM05D006138 ORTHO05D007778 3.6e-92 342.8 399 48.1
Lalb_Chr23g0278421 Lupinus albus HOM05D006138 ORTHO05D007778 8.0e-92 341.7 406 51.7
Thecc.04G198400 Theobroma cacao HOM05D006138 ORTHO05D007778 3.7e-89 332.8 413 44.1
MD04G1014100 Malus domestica HOM05D006138 ORTHO05D007778 1.4e-88 330.9 390 44.9
Gohir.A05G323100 Gossypium hirsutum HOM05D006138 ORTHO05D007778 2.5e-85 320.1 413 42.6
Gorai.009G350500 Gossypium raimondii HOM05D006138 ORTHO05D007778 2.5e-85 320.1 413 42.9
CANSAT78G1344 Cannabis sativa HOM05D006138 ORTHO05D007778 1.0e-83 314.7 406 44.6
CANSAT78G2425 Cannabis sativa HOM05D006138 ORTHO05D007778 1.0e-83 314.7 406 44.6
Gohir.D05G326000 Gossypium hirsutum HOM05D006138 ORTHO05D007778 3.1e-83 313.2 413 42.4
CsaV3_3G010820 Cucumis sativus L. HOM05D006138 ORTHO05D007778 1.2e-82 311.2 399 45.6
Dinv27208 Davidia involucrata HOM05D006138 ORTHO05D007778 9.8e-82 308.1 414 42.5
Manes.15G055900 Manihot esculenta HOM05D006138 ORTHO05D007778 2.2e-81 307.0 363 45.7
GSVIVG01020999001 Vitis vinifera HOM05D006138 ORTHO05D007778 5.4e-80 302.4 412 43.7
Cpa.g.sc83.29 Carica papaya HOM05D006138 ORTHO05D007778 1.6e-79 300.8 413 41.4
Actinidia38756 Actinidia chinensis HOM05D006138 ORTHO05D007778 1.1e-75 288.1 414 42.0
Potri.001G317900 Populus trichocarpa HOM05D006138 ORTHO05D007778 2.3e-75 287.0 415 39.8
TAR362G0162 Trochodendron aralioides HOM05D006138 ORTHO05D007778 2.3e-75 287.0 411 40.4
TWI53G0419 Tripterygium wilfordii HOM05D006138 ORTHO05D007778 3.1e-75 286.6 410 41.7
ClCG05G003180 Citrullus lanatus HOM05D006138 ORTHO05D007778 4.0e-75 286.2 399 42.4
TWI09G0334 Tripterygium wilfordii HOM05D006138 ORTHO05D007778 6.8e-75 285.4 411 40.6
Sed0019269 Sechium edule HOM05D006138 ORTHO05D007778 2.6e-74 283.5 409 42.5
COL.COLO4_20197 Corchorus olitorius HOM05D006138 ORTHO05D007778 4.4e-74 282.7 417 39.1
Atru.chr4.1604 Acer truncatum HOM05D006138 ORTHO05D007778 1.3e-73 281.2 376 42.3
Cc03_g08330 Coffea canephora HOM05D006138 ORTHO05D007778 1.4e-72 277.7 416 39.9
THA.LOC104804805 Tarenaya hassleriana HOM05D006138 ORTHO05D007778 3.2e-72 276.6 407 40.8
Carub.0003s2421 Capsella rubella HOM05D006138 ORTHO05D007778 6.0e-71 272.3 411 39.7
Sp3g21610 Schrenkiella parvula HOM05D006138 ORTHO05D007778 1.7e-70 270.8 412 40.3
QL10p052654 Quercus lobata HOM05D006138 ORTHO05D007778 1.5e-69 267.7 533 35.8
Oeu025031.1 Olea europaea HOM05D006138 ORTHO05D007778 1.9e-69 267.3 408 38.5
AL3G38900 Arabidopsis lyrata HOM05D006138 ORTHO05D007778 1.1e-67 261.5 413 39.2
TPR.G24162 Trifolium pratense HOM05D006138 ORTHO05D007778 1.4e-67 261.2 287 53.0
AT3G23910 Arabidopsis thaliana HOM05D006138 ORTHO05D007778 1.8e-67 260.8 403 39.0
Lj6A392G25 Lonicera japonica HOM05D006138 ORTHO05D007778 4.0e-67 259.6 446 36.1
Nn1g07955 Nelumbo nucifera HOM05D006138 ORTHO05D007778 5.2e-67 259.2 403 38.2
Lsat_1_v5_gn_6_60661 Lactuca sativa HOM05D006138 ORTHO05D007778 6.8e-67 258.8 414 38.2
MSTRG.9735 Avicennia marina HOM05D006138 ORTHO05D007778 1.2e-66 258.1 402 38.3
Peaxi162Scf00047g00230 Petunia axillaris HOM05D006138 ORTHO05D007778 1.2e-66 258.1 404 38.6
DCAR_026640 Daucus carota HOM05D006138 ORTHO05D007778 1.3e-65 254.6 408 38.5
Glyma.18G001700 Glycine max HOM05D006138 ORTHO05D007778 1.3e-65 254.6 240 59.6
vmacro15557 Vaccinium macrocarpon HOM05D006138 ORTHO05D007778 2.2e-65 253.8 414 39.4
Thhalv10002763m.g Eutrema salsugineum HOM05D006138 ORTHO05D007778 8.3e-65 251.9 351 43.0
Migut.G00745 Erythranthe guttata HOM05D006138 ORTHO05D007778 1.4e-64 251.1 408 36.3
Aa31LG8G10490 Aethionema arabicum HOM05D006138 ORTHO05D007778 5.4e-64 249.2 418 37.3
C07p13230 Brassica napus HOM05D006138 ORTHO05D007778 5.4e-64 249.2 411 38.2
BcaC06g35587 Brassica carinata HOM05D006138 ORTHO05D007778 7.1e-64 248.8 411 38.0
Nitab4.5_0000401g0220 Nicotiana tabacum HOM05D006138 ORTHO05D007778 9.2e-64 248.4 410 37.3
A07p08490 Brassica napus HOM05D006138 ORTHO05D007778 2.7e-63 246.9 411 37.7
HanXRQChr07g0185891 Helianthus annuus HOM05D006138 ORTHO05D007778 1.0e-62 245.0 415 37.1
AT3G24255 Arabidopsis thaliana HOM05D006138 ORTHO05D007778 1.7e-62 244.2 410 37.3
Solyc09g092180.3 Solanum lycopersicum HOM05D006138 ORTHO05D007778 1.7e-62 244.2 403 37.5
Lj6A407G21 Lonicera japonica HOM05D006138 ORTHO05D007778 2.3e-62 243.8 446 35.0
Sc13g0000300 Simmondsia chinensis HOM05D006138 ORTHO05D007778 3.9e-62 243.0 405 38.5
Sopen09g035050 Solanum pennellii HOM05D006138 ORTHO05D007778 6.6e-62 242.3 403 37.0
CAN.G1565.12 Capsicum annuum HOM05D006138 ORTHO05D007778 8.6e-62 241.9 364 39.3
PGSC0003DMG400026422 Solanum tuberosum HOM05D006138 ORTHO05D007778 8.6e-62 241.9 364 39.6
BolC7t41815H Brassica oleracea HOM05D006138 ORTHO05D007778 2.5e-61 240.4 389 38.8
SalBow8G0822 Salvia bowleyana HOM05D006138 ORTHO05D007778 1.6e-60 237.7 426 35.4
PGR004G2157 Punica granatum HOM05D006138 ORTHO05D007778 2.8e-60 236.9 400 37.8
RhsimUnG0035600 Rhododendron simsii HOM05D006138 ORTHO05D007778 8.1e-60 235.3 543 31.3
SalBow8G2056 Salvia bowleyana HOM05D006138 ORTHO05D007778 8.1e-60 235.3 426 35.2
SGA_v2.0_scaffold19G08768 Striga asiatica HOM05D006138 ORTHO05D007778 1.4e-59 234.6 408 35.0
AUR62020846 Chenopodium quinoa HOM05D006138 ORTHO05D007778 4.0e-59 233.0 408 36.5
BraA07t28634Z Brassica rapa HOM05D006138 ORTHO05D007778 5.2e-59 232.6 418 36.6
BcaB06g26554 Brassica carinata HOM05D006138 ORTHO05D007778 8.9e-59 231.9 412 37.4
Sabra16G0201200 Salix brachista HOM05D006138 ORTHO05D007778 8.9e-59 231.9 520 31.7
Eucgr.H00039 Eucalyptus grandis HOM05D006138 ORTHO05D007778 1.5e-58 231.1 367 37.9
Rhsim02G0060900 Rhododendron simsii HOM05D006138 ORTHO05D007778 7.6e-58 228.8 560 29.8
CSS0014339 Camellia sinensis var. sinensis HOM05D006138 ORTHO05D007778 1.0e-54 218.4 261 46.7
PSO017G1394 Papaver somniferum HOM05D006138 ORTHO05D007778 8.7e-54 215.3 398 35.4
Nitab4.5_0003101g0010 Nicotiana tabacum HOM05D006138 ORTHO05D007778 1.1e-53 214.9 408 34.3
Eucgr.L02926 Eucalyptus grandis HOM05D006138 ORTHO05D007778 5.6e-53 212.6 367 36.2
Ah.04g149320 Amaranthus hybridus HOM05D006138 ORTHO05D007778 1.3e-52 211.5 401 35.9
CSS0015025 Camellia sinensis var. sinensis HOM05D006138 ORTHO05D007778 1.3e-52 211.5 261 46.0
vmacro15559 Vaccinium macrocarpon HOM05D006138 ORTHO05D007778 2.1e-52 210.7 428 34.3
Aqoxy360s001 Aquilegia oxysepala HOM05D006138 ORTHO05D007778 1.1e-51 208.4 356 37.6
Aqoxy2G04005 Aquilegia oxysepala HOM05D006138 ORTHO05D007778 1.4e-51 208.0 399 35.3
ECA233G3278 Erigeron canadensis HOM05D006138 ORTHO05D007778 3.1e-51 206.8 398 34.7
CDE05G2116 Ceratophyllum demersum HOM05D006138 ORTHO05D007778 1.7e-49 201.1 357 35.6
EL10Ac3g07466 Beta vulgaris HOM05D006138 ORTHO05D007778 1.4e-48 198.0 364 35.4
RcHm_v2.0_Chr4g0414021 Rosa chinensis HOM05D006138 ORTHO05D007778 1.0e-46 191.8 288 37.8
AUR62018570 Chenopodium quinoa HOM05D006138 ORTHO05D007778 1.9e-45 187.6 364 32.7
Gohir.A12G078622 Gossypium hirsutum HOM05D006138 ORTHO05D007778 1.9e-45 187.6 267 38.2
PSO063G4547 Papaver somniferum HOM05D006138 ORTHO05D007778 3.6e-44 183.3 364 34.6
FAN12G1205 Fragaria x ananassa HOM05D006138 ORTHO05D007778 5.3e-43 179.5 282 37.2
FvH4_4g13460 Fragaria vesca HOM05D006138 ORTHO05D007778 2.0e-42 177.6 282 36.9
FAN22G1553 Fragaria x ananassa HOM05D006138 ORTHO05D007778 3.4e-42 176.8 288 36.1
HPP92_023190 Vanilla planifolia HOM05D006138 ORTHO05D007778 8.4e-41 172.2 392 33.2
Prupe.1G161100 Prunus persica HOM05D006138 ORTHO05D007778 2.4e-40 170.6 253 39.5
Ciclev10005758m.g Citrus clementina HOM05D006138 ORTHO05D007778 3.9e-38 163.3 170 51.2
Haze_11642 Corylus avellana HOM05D006138 ORTHO05D007778 6.7e-38 162.5 292 36.6
unitig_37.g12032 Utricularia gibba HOM05D006138 ORTHO05D007778 4.3e-37 159.8 246 37.8
MELO3C006299.2 Cucumis melo HOM05D006138 ORTHO05D007778 3.1e-35 153.7 251 38.2
Gohir.D12G210200 Gossypium hirsutum HOM05D006138 ORTHO05D007778 3.4e-34 150.2 226 37.6
Os04g0379800 Oryza sativa ssp. japonica HOM05D006138 ORTHO05D007778 6.5e-33 146.0 403 31.5
Hma1.2p1_0017F.1_g011170 Hydrangea macrophylla HOM05D006138 ORTHO05D007778 3.2e-32 143.7 246 38.2
Hund24401 Selenicereus undatus HOM05D006138 ORTHO05D007778 3.1e-27 127.1 251 33.9
Oeu025032.1 Olea europaea HOM05D006138 ORTHO05D007778 1.0e-25 122.1 128 50.0
Duzib268G1255 Durio zibethinus HOM05D006138 ORTHO05D007778 6.5e-25 119.4 132 49.2
FAN07G2199 Fragaria x ananassa HOM05D006138 ORTHO05D007778 1.6e-23 114.8 249 32.9
RcHm_v2.0_Chr4g0414071 Rosa chinensis HOM05D006138 ORTHO05D007778 5.7e-21 106.3 120 45.0
Phvul.001G135400 Phaseolus vulgaris HOM05D006138 ORTHO05D007778 9.0e-19 99.0 129 45.7
Zm00001eb085830 Zea mays HOM05D006138 ORTHO05D007778 1.0e-17 95.5 402 26.1
Mapoly0008s0044 Marchantia polymorpha HOM05D006138 ORTHO05D007778 3.0e-14 84.0 377 23.9
Duzib268G0147 Durio zibethinus HOM05D006138 ORTHO05D007778 1.3e-12 78.6 134 35.8
Duzib268G0476 Durio zibethinus HOM05D006138 ORTHO05D007778 6.3e-12 76.3 131 35.9
Nitab4.5_0001652g0120 Nicotiana tabacum HOM05D006138 ORTHO05D007778 1.1e-11 75.5 208 28.4
Actinidia16488 Actinidia chinensis HOM05D006138 ORTHO05D007778 3.1e-11 73.9 85 44.7
Hund29337 Selenicereus undatus HOM05D006138 ORTHO05D007778 1.9e-08 64.7 100 32.0
Hund29338 Selenicereus undatus HOM05D006138 ORTHO05D007778 1.9e-08 64.7 100 32.0
Nn1g00061 Nelumbo nucifera HOM05D006138 ORTHO05D007778 1.2e-07 62.0 113 30.1
FAN17G0457 Fragaria x ananassa HOM05D006138 ORTHO05D007778 4.7e-07 60.1 133 27.8


User provided reference genes

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