Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.HXUJ4C Arachis hypogaea HOM05D004765 ORTHO05D005900 0.0e+00 1112.1 565 100.0
arahy.Tifrunner.gnm1.ann1.E8Y1JT Arachis hypogaea HOM05D004765 ORTHO05D005900 0.0e+00 1108.6 565 99.5
Glyma.11G181400 Glycine max HOM05D004765 ORTHO05D005900 2.0e-287 991.9 565 88.0
Glyma.12G091700 Glycine max HOM05D004765 ORTHO05D005900 1.7e-286 988.8 565 87.8
Ca_19442_v3 Cicer arietinum L. HOM05D004765 ORTHO05D005900 1.6e-284 982.2 565 87.1
Phvul.011G096100 Phaseolus vulgaris HOM05D004765 ORTHO05D005900 4.7e-284 980.7 565 86.5
TPR.G17196 Trifolium pratense HOM05D004765 ORTHO05D005900 6.8e-283 976.9 565 86.5
Lj3g0002417 Lotus japonicus HOM05D004765 ORTHO05D005900 3.4e-282 974.5 565 86.4
Lalb_Chr03g0028231 Lupinus albus HOM05D004765 ORTHO05D005900 4.1e-280 967.6 565 85.3
Lalb_Chr01g0004931 Lupinus albus HOM05D004765 ORTHO05D005900 3.5e-279 964.5 565 85.3
Medtr4g052530 Medicago truncatula HOM05D004765 ORTHO05D005900 4.7e-276 954.1 581 82.6
Prupe.6G135800 Prunus persica HOM05D004765 ORTHO05D005900 3.1e-267 924.9 566 82.2
Cfa009988 Carpinus fangiana HOM05D004765 ORTHO05D005900 1.7e-265 919.1 565 81.1
Thecc.09G278900 Theobroma cacao HOM05D004765 ORTHO05D005900 7.8e-263 910.2 565 81.4
CiPaw.14G098100 Carya illinoinensis HOM05D004765 ORTHO05D005900 1.3e-262 909.4 565 80.2
MD03G1149800 Malus domestica HOM05D004765 ORTHO05D005900 3.9e-262 907.9 549 82.3
Ciclev10028115m.g Citrus clementina HOM05D004765 ORTHO05D005900 6.6e-262 907.1 566 81.4
QL01p011857 Quercus lobata HOM05D004765 ORTHO05D005900 1.5e-261 906.0 565 80.7
Manes.11G164300 Manihot esculenta HOM05D004765 ORTHO05D005900 2.5e-261 905.2 566 79.7
Potri.009G160400 Populus trichocarpa HOM05D004765 ORTHO05D005900 9.5e-261 903.3 563 80.3
Haze_23347 Corylus avellana HOM05D004765 ORTHO05D005900 1.2e-258 896.3 633 73.1
Sabra09G0125600 Salix brachista HOM05D004765 ORTHO05D005900 2.0e-258 895.6 566 79.9
Cpa.g.sc195.23 Carica papaya HOM05D004765 ORTHO05D005900 7.6e-258 893.6 566 78.4
Psat7g187280 Pisum sativum HOM05D004765 ORTHO05D005900 2.2e-257 892.1 520 85.2
RcHm_v2.0_Chr5g0045881 Rosa chinensis HOM05D004765 ORTHO05D005900 2.9e-257 891.7 560 80.0
Gorai.009G084100 Gossypium raimondii HOM05D004765 ORTHO05D005900 1.4e-256 889.4 549 81.2
CANSAT54G2137 Cannabis sativa HOM05D004765 ORTHO05D005900 1.9e-256 889.0 569 77.9
COL.COLO4_34006 Corchorus olitorius HOM05D004765 ORTHO05D005900 2.4e-256 888.6 565 79.1
MD11G1168600 Malus domestica HOM05D004765 ORTHO05D005900 2.4e-256 888.6 557 80.6
Gohir.D05G082500 Gossypium hirsutum HOM05D004765 ORTHO05D005900 3.2e-256 888.3 549 81.1
GSVIVG01036081001 Vitis vinifera HOM05D004765 ORTHO05D005900 4.1e-256 887.9 565 78.4
Gohir.A05G079600 Gossypium hirsutum HOM05D004765 ORTHO05D005900 7.1e-256 887.1 549 81.2
Gohir.A09G097000 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.2e-255 886.3 567 78.7
Gorai.006G113500 Gossypium raimondii HOM05D004765 ORTHO05D005900 1.6e-255 885.9 567 78.7
PGR119G0504 Punica granatum HOM05D004765 ORTHO05D005900 1.6e-255 885.9 565 79.5
Dinv22819 Davidia involucrata HOM05D004765 ORTHO05D005900 2.1e-255 885.6 566 77.6
Gohir.D09G096800 Gossypium hirsutum HOM05D004765 ORTHO05D005900 4.6e-255 884.4 567 78.7
TWI31G1403 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 1.3e-254 882.9 559 79.1
Potri.004G198200 Populus trichocarpa HOM05D004765 ORTHO05D005900 1.1e-253 879.8 567 78.3
Actinidia07259 Actinidia chinensis HOM05D004765 ORTHO05D005900 9.6e-253 876.7 564 77.8
TWI79G1303 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 9.6e-253 876.7 559 78.2
Dinv08934 Davidia involucrata HOM05D004765 ORTHO05D005900 8.1e-252 873.6 549 77.8
Actinidia24229 Actinidia chinensis HOM05D004765 ORTHO05D005900 1.8e-251 872.5 564 77.0
Sabra04G0134200 Salix brachista HOM05D004765 ORTHO05D005900 1.8e-251 872.5 557 78.3
FAN11G2377 Fragaria x ananassa HOM05D004765 ORTHO05D005900 2.4e-251 872.1 566 77.0
CSS0013873 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 2.0e-250 869.0 549 78.7
CSS0028820 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 3.4e-250 868.2 549 78.7
FAN16G1441 Fragaria x ananassa HOM05D004765 ORTHO05D005900 4.4e-250 867.8 566 76.7
FAN21G2648 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.1e-248 863.2 581 75.2
CSS0015967 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 7.1e-248 860.5 560 77.3
CSS0022046 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 2.7e-247 858.6 560 77.1
Sed0019641 Sechium edule HOM05D004765 ORTHO05D005900 3.0e-246 855.1 566 75.6
FAN25G0471 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.5e-245 852.8 589 73.7
Atru.chr3.3169 Acer truncatum HOM05D004765 ORTHO05D005900 5.6e-245 850.9 545 79.3
vmacro14340 Vaccinium macrocarpon HOM05D004765 ORTHO05D005900 2.8e-244 848.6 547 76.6
Eucgr.J00522 Eucalyptus grandis HOM05D004765 ORTHO05D005900 1.4e-243 846.3 528 79.7
Sc12g0004610 Simmondsia chinensis HOM05D004765 ORTHO05D005900 1.8e-243 845.9 565 74.9
ClCG01G011820 Citrullus lanatus HOM05D004765 ORTHO05D005900 3.1e-243 845.1 568 75.7
DCAR_006171 Daucus carota HOM05D004765 ORTHO05D005900 4.2e-240 834.7 551 76.0
Duzib170G0619 Durio zibethinus HOM05D004765 ORTHO05D005900 7.1e-240 833.9 565 74.3
MELO3C025589.2 Cucumis melo HOM05D004765 ORTHO05D005900 9.3e-240 833.6 566 74.7
THA.LOC104814781 Tarenaya hassleriana HOM05D004765 ORTHO05D005900 1.2e-239 833.2 571 74.1
CsaV3_1G015080 Cucumis sativus L. HOM05D004765 ORTHO05D005900 4.6e-239 831.2 566 74.6
Rhsim01G0203800 Rhododendron simsii HOM05D004765 ORTHO05D005900 6.0e-239 830.9 600 71.3
AL5G22480 Arabidopsis lyrata HOM05D004765 ORTHO05D005900 2.5e-237 825.5 562 73.5
ECA248G3663 Erigeron canadensis HOM05D004765 ORTHO05D005900 2.5e-237 825.5 559 74.2
Cc01_g08830 Coffea canephora HOM05D004765 ORTHO05D005900 5.6e-237 824.3 562 72.8
Lsat_1_v5_gn_1_77581 Lactuca sativa HOM05D004765 ORTHO05D005900 7.4e-237 823.9 549 74.3
AT3G44330 Arabidopsis thaliana HOM05D004765 ORTHO05D005900 9.6e-237 823.5 562 73.0
Thhalv10010249m.g Eutrema salsugineum HOM05D004765 ORTHO05D005900 1.3e-236 823.2 565 72.9
MSTRG.18770 Avicennia marina HOM05D004765 ORTHO05D005900 2.8e-236 822.0 556 73.7
CARHR104550 Cardamine hirsuta HOM05D004765 ORTHO05D005900 3.6e-236 821.6 548 75.0
Carub.0005s1005 Capsella rubella HOM05D004765 ORTHO05D005900 4.8e-236 821.2 565 72.4
Sp5g16890 Schrenkiella parvula HOM05D004765 ORTHO05D005900 6.2e-236 820.8 565 72.7
Migut.N02474 Erythranthe guttata HOM05D004765 ORTHO05D005900 4.0e-235 818.1 567 73.0
BcaB01g01169 Brassica carinata HOM05D004765 ORTHO05D005900 9.0e-235 817.0 569 71.4
A06p22050 Brassica napus HOM05D004765 ORTHO05D005900 9.0e-235 817.0 567 72.5
BraA06t25294Z Brassica rapa HOM05D004765 ORTHO05D005900 2.0e-234 815.8 570 72.1
Hund20934 Selenicereus undatus HOM05D004765 ORTHO05D005900 9.9e-234 813.5 549 74.0
Nn6g34806 Nelumbo nucifera HOM05D004765 ORTHO05D005900 1.3e-233 813.1 559 74.1
C03p69330 Brassica napus HOM05D004765 ORTHO05D005900 2.9e-233 812.0 570 72.1
BolC3t19191H Brassica oleracea HOM05D004765 ORTHO05D005900 2.9e-233 812.0 570 72.1
PSO801G0028 Papaver somniferum HOM05D004765 ORTHO05D005900 2.9e-233 812.0 549 74.3
HanXRQChr01g0024031 Helianthus annuus HOM05D004765 ORTHO05D005900 4.9e-233 811.2 549 74.0
PSO339G1244 Papaver somniferum HOM05D004765 ORTHO05D005900 4.9e-233 811.2 565 72.6
Peaxi162Scf00345g01023 Petunia axillaris HOM05D004765 ORTHO05D005900 8.4e-233 810.4 556 74.6
HanXRQChr11g0343661 Helianthus annuus HOM05D004765 ORTHO05D005900 1.4e-232 809.7 549 73.2
BcaC01g02031 Brassica carinata HOM05D004765 ORTHO05D005900 1.9e-232 809.3 570 71.8
ATR0081G060 Amborella trichopoda HOM05D004765 ORTHO05D005900 3.5e-231 805.1 549 70.9
BcaC01g02231 Brassica carinata HOM05D004765 ORTHO05D005900 6.7e-230 800.8 566 70.7
Nitab4.5_0003068g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.9e-229 799.3 552 74.6
A06p26850 Brassica napus HOM05D004765 ORTHO05D005900 9.6e-229 797.0 562 70.8
Peaxi162Scf00224g00217 Petunia axillaris HOM05D004765 ORTHO05D005900 1.6e-228 796.2 558 72.8
Nitab4.5_0000227g0370 Nicotiana tabacum HOM05D004765 ORTHO05D005900 8.1e-228 793.9 552 74.1
Solyc01g009380.3 Solanum lycopersicum HOM05D004765 ORTHO05D005900 3.1e-227 792.0 562 72.2
Sopen11g027390 Solanum pennellii HOM05D004765 ORTHO05D005900 4.0e-227 791.6 550 73.1
Solyc11g068670.2 Solanum lycopersicum HOM05D004765 ORTHO05D005900 2.6e-226 788.9 550 72.9
Aa31LG4G13830 Aethionema arabicum HOM05D004765 ORTHO05D005900 4.5e-226 788.1 549 72.5
BcaB02g10755 Brassica carinata HOM05D004765 ORTHO05D005900 1.3e-225 786.6 565 70.1
Duzib168G0312 Durio zibethinus HOM05D004765 ORTHO05D005900 2.9e-225 785.4 565 72.7
Aqoxy2G01052 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 1.4e-224 783.1 565 70.4
SalBow6G2851 Salvia bowleyana HOM05D004765 ORTHO05D005900 3.2e-224 781.9 598 68.4
Nitab4.5_0008177g0070 Nicotiana tabacum HOM05D004765 ORTHO05D005900 5.5e-224 781.2 604 68.2
CDE08G1681 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 1.2e-223 780.0 534 72.1
AUR62020257 Chenopodium quinoa HOM05D004765 ORTHO05D005900 1.2e-223 780.0 537 73.2
Aqoxy4G02718 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 1.6e-223 779.6 597 67.0
SGA_v2.0_scaffold177G39433 Striga asiatica HOM05D004765 ORTHO05D005900 3.5e-223 778.5 556 70.1
Nitab4.5_0000731g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 4.6e-223 778.1 538 73.2
Oeu051604.1 Olea europaea HOM05D004765 ORTHO05D005900 7.9e-223 777.3 568 70.4
EL10Ac7g16329 Beta vulgaris HOM05D004765 ORTHO05D005900 2.3e-222 775.8 636 63.7
CAN.G745.10 Capsicum annuum HOM05D004765 ORTHO05D005900 3.9e-222 775.0 549 70.7
Os08g0102100 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D005900 9.0e-219 763.8 560 66.8
HPP92_006357 Vanilla planifolia HOM05D004765 ORTHO05D005900 1.9e-216 756.1 556 67.3
SGA_v2.0_scaffold295G47508 Striga asiatica HOM05D004765 ORTHO05D005900 3.6e-215 751.9 555 67.0
Zm00001eb259900 Zea mays HOM05D004765 ORTHO05D005900 2.4e-211 739.2 561 65.4
Lj1A257T30 Lonicera japonica HOM05D004765 ORTHO05D005900 7.7e-210 734.2 454 80.0
FvH4_3g25670 Fragaria vesca HOM05D004765 ORTHO05D005900 1.1e-208 730.3 481 74.8
unitig_0.g1473 Utricularia gibba HOM05D004765 ORTHO05D005900 7.4e-205 717.6 571 64.4
CDE02G4012 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 1.5e-197 693.3 566 63.6
Sc12g0004660 Simmondsia chinensis HOM05D004765 ORTHO05D005900 1.3e-196 690.3 482 71.6
Migut.D02363 Erythranthe guttata HOM05D004765 ORTHO05D005900 4.1e-195 685.3 470 71.7
Zm00001eb198750 Zea mays HOM05D004765 ORTHO05D005900 2.2e-193 679.5 509 64.6
Mapoly0185s0020 Marchantia polymorpha HOM05D004765 ORTHO05D005900 1.1e-187 660.6 566 58.3
Pp3c12_11630 Physcomitrium patens HOM05D004765 ORTHO05D005900 4.0e-182 642.1 556 57.9
SMO141G0161 Selaginella moellendorffii HOM05D004765 ORTHO05D005900 6.3e-172 608.2 554 55.6
AUR62001526 Chenopodium quinoa HOM05D004765 ORTHO05D005900 1.4e-171 607.1 417 72.4
TAR633G2468 Trochodendron aralioides HOM05D004765 ORTHO05D005900 2.4e-155 553.1 367 74.1
C03p67600 Brassica napus HOM05D004765 ORTHO05D005900 3.2e-155 552.7 408 66.7
Oeu014468.1 Olea europaea HOM05D004765 ORTHO05D005900 3.2e-155 552.7 359 78.0
BraA06t25618Z Brassica rapa HOM05D004765 ORTHO05D005900 9.2e-155 551.2 404 67.1
BolSC21t60262H Brassica oleracea HOM05D004765 ORTHO05D005900 3.5e-154 549.3 408 66.4
CBR_g17963 Chara braunii HOM05D004765 ORTHO05D005900 8.9e-142 508.1 549 49.0
VMungo1127G1239 Vigna mungo HOM05D004765 ORTHO05D005900 7.1e-139 498.4 272 90.8
AagrBONN_evm.TU.Sc2ySwM_368.2350 Anthoceros agrestis HOM05D004765 ORTHO05D005900 2.9e-132 476.5 533 45.8
Sopen01g004890 Solanum pennellii HOM05D004765 ORTHO05D005900 2.1e-122 443.7 328 68.3
CAN.G226.4 Capsicum annuum HOM05D004765 ORTHO05D005900 1.0e-108 398.3 336 62.2
SEGI_38882 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 4.8e-95 352.8 220 76.4
CAN.G30.1 Capsicum annuum HOM05D004765 ORTHO05D005900 4.8e-79 299.7 194 71.1
Migut.D02428 Erythranthe guttata HOM05D004765 ORTHO05D005900 5.3e-78 296.2 200 77.5
Psat4g157520 Pisum sativum HOM05D004765 ORTHO05D005900 7.2e-75 285.8 195 76.9
SEGI_20304 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 1.7e-52 211.5 141 74.5
CAN.G198.33 Capsicum annuum HOM05D004765 ORTHO05D005900 4.7e-50 203.4 152 65.8
CAN.G1211.3 Capsicum annuum HOM05D004765 ORTHO05D005900 2.6e-48 197.6 147 68.0
CAN.G79.6 Capsicum annuum HOM05D004765 ORTHO05D005900 1.2e-42 178.7 189 52.9
CAN.G79.7 Capsicum annuum HOM05D004765 ORTHO05D005900 1.5e-40 171.8 117 68.4
TAR633G0557 Trochodendron aralioides HOM05D004765 ORTHO05D005900 1.4e-30 138.7 85 87.1
VMungo0251G2550 Vigna mungo HOM05D000107 ORTHO05D000001 1.5e-27 128.6 106 64.2
Lj1C257T9 Lonicera japonica HOM05D004765 ORTHO05D030006 3.6e-26 124.0 101 62.4
QL04p027443 Quercus lobata HOM05D004765 ORTHO05D030006 1.3e-23 115.5 77 76.6
SEGI_24377 Sequoiadendron giganteum HOM05D004765 ORTHO05D030006 2.4e-22 111.3 96 57.3
Sc12g0004650 Simmondsia chinensis HOM05D004765 ORTHO05D030006 2.1e-21 108.2 89 64.0
SEGI_19690 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 1.7e-20 105.1 81 61.7
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 5.3e-09 67.0 239 26.8
Os12g0509400 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D296799 2.0e-08 65.1 55 56.4
Pp3c10_16910 Physcomitrium patens HOM05D004765 ORTHO05D315325 2.2e-07 61.6 112 36.6
Os02g0736500 Oryza sativa ssp. japonica HOM05D002544 ORTHO05D007856 6.4e-07 60.1 218 28.0
VMungo0464G0759 Vigna mungo HOM05D004765 ORTHO05D005900 1.1e-06 59.3 34 79.4


User provided reference genes

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