Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.HR4B5C Arachis hypogaea HOM05D004306 ORTHO05D005055 3.4e-180 634.8 304 100.0
arahy.Tifrunner.gnm1.ann1.GV60EB Arachis hypogaea HOM05D004306 ORTHO05D005055 1.9e-178 629.0 304 98.7
Gohir.A11G216400 Gossypium hirsutum HOM05D004306 ORTHO05D005055 3.4e-164 581.6 298 91.6
Gohir.D11G207000 Gossypium hirsutum HOM05D004306 ORTHO05D005055 3.4e-164 581.6 298 91.6
Gorai.007G222100 Gossypium raimondii HOM05D004306 ORTHO05D005055 3.4e-164 581.6 298 91.6
Duzib264G0002 Durio zibethinus HOM05D004306 ORTHO05D005055 1.3e-163 579.7 297 92.3
Thecc.01G070200 Theobroma cacao HOM05D004306 ORTHO05D005055 8.4e-163 577.0 297 91.6
Duzib187G0102 Durio zibethinus HOM05D004306 ORTHO05D005055 1.4e-162 576.2 297 91.2
Lalb_Chr16g0389191 Lupinus albus HOM05D004306 ORTHO05D005055 1.4e-162 576.2 297 90.9
Manes.12G110500 Manihot esculenta HOM05D004306 ORTHO05D005055 1.9e-162 575.9 297 90.6
Dinv26913 Davidia involucrata HOM05D004306 ORTHO05D005055 2.7e-161 572.0 297 90.6
Rhsim10G0101200 Rhododendron simsii HOM05D004306 ORTHO05D005055 2.7e-161 572.0 294 91.5
GSVIVG01000140001 Vitis vinifera HOM05D004306 ORTHO05D005055 4.6e-161 571.2 297 90.6
Medtr4g095660 Medicago truncatula HOM05D004306 ORTHO05D005055 7.9e-161 570.5 298 89.3
Haze_15301 Corylus avellana HOM05D004306 ORTHO05D005055 1.0e-160 570.1 298 89.3
TAR628G0028 Trochodendron aralioides HOM05D004306 ORTHO05D005055 1.8e-160 569.3 297 89.9
Cfa004112 Carpinus fangiana HOM05D004306 ORTHO05D005055 2.3e-160 568.9 298 89.3
TPR.G23896 Trifolium pratense HOM05D004306 ORTHO05D005055 2.3e-160 568.9 298 88.3
CiPaw.02G003700 Carya illinoinensis HOM05D004306 ORTHO05D005055 8.7e-160 567.0 298 88.3
GSVIVG01000135001 Vitis vinifera HOM05D004306 ORTHO05D005055 8.7e-160 567.0 294 90.1
GSVIVG01000137001 Vitis vinifera HOM05D004306 ORTHO05D005055 8.7e-160 567.0 297 90.2
Cpa.g.sc6.39 Carica papaya HOM05D004306 ORTHO05D005055 1.1e-159 566.6 297 89.2
AUR62003989 Chenopodium quinoa HOM05D004306 ORTHO05D005055 1.1e-159 566.6 298 89.3
Ca_13922_v3 Cicer arietinum L. HOM05D004306 ORTHO05D005055 1.1e-159 566.6 297 88.9
HanXRQChr14g0449471 Helianthus annuus HOM05D004306 ORTHO05D005055 1.1e-159 566.6 297 88.9
Lj4A160T62 Lonicera japonica HOM05D004306 ORTHO05D005055 1.5e-159 566.2 298 88.6
Psat0ss839g0200 Pisum sativum HOM05D004306 ORTHO05D005055 2.5e-159 565.5 298 87.6
CANSAT01G0675 Cannabis sativa HOM05D004306 ORTHO05D005055 4.3e-159 564.7 298 87.6
Hma1.2p1_0730F.1_g209845 Hydrangea macrophylla HOM05D004306 ORTHO05D005055 4.3e-159 564.7 297 88.9
Potri.005G145400 Populus trichocarpa HOM05D004306 ORTHO05D005055 4.3e-159 564.7 297 89.9
TWI09G0703 Tripterygium wilfordii HOM05D004306 ORTHO05D005055 4.3e-159 564.7 297 88.9
ECA238G2426 Erigeron canadensis HOM05D004306 ORTHO05D005055 5.6e-159 564.3 297 88.2
Actinidia11991 Actinidia chinensis HOM05D004306 ORTHO05D005055 7.4e-159 563.9 294 89.5
CSS0001342 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 7.4e-159 563.9 294 88.4
FAN26G3311 Fragaria x ananassa HOM05D004306 ORTHO05D005055 7.4e-159 563.9 298 88.6
Glyma.17G161900 Glycine max HOM05D004306 ORTHO05D005055 7.4e-159 563.9 297 89.2
Phvul.003G236000 Phaseolus vulgaris HOM05D004306 ORTHO05D005055 7.4e-159 563.9 296 89.5
Lsat_1_v5_gn_2_82860 Lactuca sativa HOM05D004306 ORTHO05D005055 9.6e-159 563.5 301 87.4
Nn1g04599 Nelumbo nucifera HOM05D004306 ORTHO05D005055 9.6e-159 563.5 294 89.1
MD15G1294800 Malus domestica HOM05D004306 ORTHO05D005055 1.6e-158 562.8 298 87.9
VMungo0251G0785 Vigna mungo HOM05D004306 ORTHO05D005055 1.6e-158 562.8 296 88.2
FAN28G1176 Fragaria x ananassa HOM05D004306 ORTHO05D005055 2.1e-158 562.4 298 88.3
Atru.chr3.158 Acer truncatum HOM05D004306 ORTHO05D005055 4.8e-158 561.2 297 89.2
Atru.chr3.187 Acer truncatum HOM05D004306 ORTHO05D005055 4.8e-158 561.2 297 89.2
FvH4_1g17390 Fragaria vesca HOM05D004306 ORTHO05D005055 4.8e-158 561.2 298 87.9
RcHm_v2.0_Chr2g0107581 Rosa chinensis HOM05D004306 ORTHO05D005055 4.8e-158 561.2 298 87.6
FAN23G0931 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.8e-157 559.3 298 87.6
AUR62040257 Chenopodium quinoa HOM05D004306 ORTHO05D005055 2.4e-157 558.9 298 88.3
Prupe.6G223000 Prunus persica HOM05D004306 ORTHO05D005055 5.3e-157 557.8 298 87.6
ClCG01G017440 Citrullus lanatus HOM05D004306 ORTHO05D005055 9.0e-157 557.0 297 87.2
Lj4g0006645 Lotus japonicus HOM05D004306 ORTHO05D005055 2.0e-156 555.8 297 88.2
Aqoxy6G02701 Aquilegia oxysepala HOM05D004306 ORTHO05D005055 2.6e-156 555.4 298 86.6
Eucgr.H02295 Eucalyptus grandis HOM05D004306 ORTHO05D005055 4.5e-156 554.7 297 88.2
Sed0025668 Sechium edule HOM05D004306 ORTHO05D005055 4.5e-156 554.7 297 87.2
CsaV3_6G043980 Cucumis sativus L. HOM05D004306 ORTHO05D005055 7.6e-156 553.9 298 86.2
FAN19G2263 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.3e-155 553.1 308 85.1
MBI16_g09132_MAGBIO Magnolia biondii HOM05D004306 ORTHO05D005055 1.7e-155 552.7 297 86.9
Oeu014230.2 Olea europaea HOM05D004306 ORTHO05D005055 1.7e-155 552.7 297 86.5
vmacro05397 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 1.7e-155 552.7 290 89.7
PGR102G2907 Punica granatum HOM05D004306 ORTHO05D005055 4.9e-155 551.2 298 86.6
Ciclev10025794m.g Citrus clementina HOM05D004306 ORTHO05D005055 1.1e-154 550.1 297 86.5
PSO541G4466 Papaver somniferum HOM05D004306 ORTHO05D005055 1.9e-154 549.3 298 85.2
CDE04G2054 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 3.2e-154 548.5 301 85.7
Sc16g0000140 Simmondsia chinensis HOM05D004306 ORTHO05D005055 4.2e-154 548.1 302 84.8
Oeu040626.2 Olea europaea HOM05D004306 ORTHO05D005055 5.5e-154 547.7 297 85.5
Cc07_g06920 Coffea canephora HOM05D004306 ORTHO05D005055 1.6e-153 546.2 297 84.8
PGSC0003DMG400024965 Solanum tuberosum HOM05D004306 ORTHO05D005055 3.5e-153 545.0 296 86.1
EL10Ac6g15639 Beta vulgaris HOM05D004306 ORTHO05D005055 1.0e-152 543.5 298 86.9
AL7G13210 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 2.3e-152 542.3 298 85.2
Sabra05G0116200 Salix brachista HOM05D004306 ORTHO05D005055 2.3e-152 542.3 351 75.8
CAN.G1075.22 Capsicum annuum HOM05D004306 ORTHO05D005055 5.1e-152 541.2 294 86.1
Solyc02g092530.4 Solanum lycopersicum HOM05D004306 ORTHO05D005055 5.1e-152 541.2 294 86.4
THA.LOC104819873 Tarenaya hassleriana HOM05D004306 ORTHO05D005055 5.1e-152 541.2 335 78.2
Sc16g0000120 Simmondsia chinensis HOM05D004306 ORTHO05D005055 8.7e-152 540.4 298 85.6
Nitab4.5_0000651g0100 Nicotiana tabacum HOM05D004306 ORTHO05D005055 1.1e-151 540.0 296 85.5
Hund13938 Selenicereus undatus HOM05D004306 ORTHO05D005055 1.1e-151 540.0 321 81.0
Carub.0007s0271 Capsella rubella HOM05D004306 ORTHO05D005055 1.5e-151 539.7 298 84.9
Migut.L00204 Erythranthe guttata HOM05D004306 ORTHO05D005055 1.5e-151 539.7 299 84.6
Sopen02g037110 Solanum pennellii HOM05D004306 ORTHO05D005055 1.5e-151 539.7 294 86.1
Peaxi162Scf00264g00117 Petunia axillaris HOM05D004306 ORTHO05D005055 1.9e-151 539.3 294 85.7
BolC1t00152H Brassica oleracea HOM05D004306 ORTHO05D005055 2.5e-151 538.9 298 84.6
Thhalv10025180m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 2.5e-151 538.9 296 85.8
Lj4g0023143 Lotus japonicus HOM05D004306 ORTHO05D005055 2.5e-151 538.9 297 84.8
SGA_v2.0_scaffold21G09395 Striga asiatica HOM05D004306 ORTHO05D005055 2.5e-151 538.9 297 84.2
C01p01570 Brassica napus HOM05D004306 ORTHO05D005055 3.3e-151 538.5 298 84.9
CARHR245950 Cardamine hirsuta HOM05D004306 ORTHO05D005055 3.3e-151 538.5 298 84.6
AT4G37550 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 5.7e-151 537.7 298 84.6
A01p01390 Brassica napus HOM05D004306 ORTHO05D005055 5.7e-151 537.7 298 84.6
BraA01t00135Z Brassica rapa HOM05D004306 ORTHO05D005055 5.7e-151 537.7 298 84.6
Aa31LG6G14430 Aethionema arabicum HOM05D004306 ORTHO05D005055 9.7e-151 537.0 298 84.2
BraA01t00136Z Brassica rapa HOM05D004306 ORTHO05D005055 1.3e-150 536.6 298 84.6
A01p01400 Brassica napus HOM05D004306 ORTHO05D005055 1.6e-150 536.2 298 84.2
BolC1t00153H Brassica oleracea HOM05D004306 ORTHO05D005055 2.2e-150 535.8 298 84.2
Thhalv10025178m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 2.2e-150 535.8 294 85.7
Nitab4.5_0006069g0040 Nicotiana tabacum HOM05D004306 ORTHO05D005055 2.2e-150 535.8 294 85.4
BcaNung05904 Brassica carinata HOM05D004306 ORTHO05D005055 2.8e-150 535.4 298 84.2
C01p01580 Brassica napus HOM05D004306 ORTHO05D005055 2.8e-150 535.4 298 84.2
AT4G37560 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 3.7e-150 535.0 298 85.2
CARHR245960 Cardamine hirsuta HOM05D004306 ORTHO05D005055 4.8e-150 534.6 298 84.2
SalBow5G1134 Salvia bowleyana HOM05D004306 ORTHO05D005055 4.8e-150 534.6 297 84.2
SalBow5G1710 Salvia bowleyana HOM05D004306 ORTHO05D005055 8.2e-150 533.9 297 84.2
AL7G13200 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 1.1e-149 533.5 298 83.9
MSTRG.15357 Avicennia marina HOM05D004306 ORTHO05D005055 1.1e-149 533.5 294 84.7
Sp7g35230 Schrenkiella parvula HOM05D004306 ORTHO05D005055 1.1e-149 533.5 294 85.0
Sp7g35240 Schrenkiella parvula HOM05D004306 ORTHO05D005055 3.1e-149 531.9 298 84.2
Os01g0764900 Oryza sativa ssp. japonica HOM05D004306 ORTHO05D005055 2.7e-145 518.8 296 79.7
unitig_748.g8394 Utricularia gibba HOM05D004306 ORTHO05D005055 3.6e-145 518.5 297 80.1
Zm00001eb370290 Zea mays HOM05D004306 ORTHO05D005055 3.0e-144 515.4 296 79.1
BcaNung05905 Brassica carinata HOM05D004306 ORTHO05D005055 2.2e-139 499.2 298 80.5
MELO3C007621.2 Cucumis melo HOM05D004306 ORTHO05D005055 5.0e-139 498.0 259 89.6
BcaNung05906 Brassica carinata HOM05D004306 ORTHO05D005055 6.5e-139 497.7 298 80.2
DCAR_025786 Daucus carota HOM05D004306 ORTHO05D005055 2.5e-138 495.7 268 85.4
Pp3c3_32950 Physcomitrium patens HOM05D004306 ORTHO05D005055 1.7e-134 483.0 298 74.2
CSS0047878 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 3.5e-132 475.3 273 81.0
SMO141G0231 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 2.9e-131 472.2 296 74.3
Cre16.g691750 Chlamydomonas reinhardtii HOM05D004306 ORTHO05D005055 7.2e-130 467.6 294 75.5
COL.COLO4_11552 Corchorus olitorius HOM05D004306 ORTHO05D005055 4.1e-125 451.8 232 90.9
Ah.02g125510 Amaranthus hybridus HOM05D004306 ORTHO05D005055 9.1e-125 450.7 283 77.4
Cfa004110 Carpinus fangiana HOM05D004306 ORTHO05D005055 8.5e-123 444.1 309 72.8
HPP92_014148 Vanilla planifolia HOM05D004306 ORTHO05D005055 2.4e-117 426.0 235 83.8
CSS0039286 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 5.3e-117 424.9 294 71.1
ATR0019G017 Amborella trichopoda HOM05D004306 ORTHO05D005055 2.7e-113 412.5 223 84.8
CSS0041574 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 8.0e-113 411.0 221 86.9
HPP92_014166 Vanilla planifolia HOM05D004306 ORTHO05D005055 1.0e-91 340.9 271 64.9
DCAR_000330 Daucus carota HOM05D004306 ORTHO05D005055 5.4e-77 292.0 160 83.1
Zm00001eb152190 Zea mays HOM05D004306 ORTHO05D005055 1.6e-76 290.4 163 79.8
SMO170G0023 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 3.0e-75 286.2 230 60.4
Oeu013288.2 Olea europaea HOM05D004306 ORTHO05D005055 2.8e-73 279.6 286 53.5
EL10Ac5g12500 Beta vulgaris HOM05D004306 ORTHO05D005055 1.1e-69 267.7 140 90.0
DCAR_025787 Daucus carota HOM05D004306 ORTHO05D005055 6.0e-68 261.9 143 83.9
SEGI_23023 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 2.8e-65 253.1 143 79.0
MD00G1015600 Malus domestica HOM05D004306 ORTHO05D005055 1.5e-63 247.3 196 63.3
SEGI_32720 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.1e-61 241.1 142 77.5
SEGI_27901 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.4e-61 240.7 145 77.2
COL.COLO4_11551 Corchorus olitorius HOM05D004306 ORTHO05D005055 8.4e-54 214.9 135 77.0
TPR.G23871 Trifolium pratense HOM05D004306 ORTHO05D005055 5.8e-47 192.2 111 81.1
ATR0019G021 Amborella trichopoda HOM05D004306 ORTHO05D005055 3.2e-37 159.8 127 63.0
Cfa025028 Carpinus fangiana HOM05D004306 ORTHO05D005055 5.3e-24 115.9 123 51.2
ATR0515G001 Amborella trichopoda HOM05D004306 ORTHO05D005055 2.0e-23 114.0 55 90.9
MD00G1015700 Malus domestica HOM05D004306 ORTHO05D005055 2.2e-14 84.0 46 76.1
SEGI_03818 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.9e-13 80.9 64 56.2
PRCOL_00001243 Prasinoderma coloniale HOM05D004306 ORTHO05D005055 1.4e-08 64.7 168 28.0
RcHm_v2.0_Chr2g0107621 Rosa chinensis HOM05D004306 ORTHO05D005055 1.3e-06 58.2 33 75.8


User provided reference genes

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