Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.HNS49Q Arachis hypogaea HOM05D006467 ORTHO05D008012 8.5e-61 236.9 125 100.0
arahy.Tifrunner.gnm1.ann1.RH0WXQ Arachis hypogaea HOM05D006467 ORTHO05D008012 8.5e-61 236.9 125 100.0
arahy.Tifrunner.gnm1.ann1.VPUZ6C Arachis hypogaea HOM05D006467 ORTHO05D008012 8.5e-61 236.9 125 100.0
Glyma.10G053300 Glycine max HOM05D006467 ORTHO05D008012 1.1e-39 166.8 124 69.4
Glyma.13G140300 Glycine max HOM05D006467 ORTHO05D008012 2.4e-39 165.6 125 67.2
VMungo0720G0455 Vigna mungo HOM05D006467 ORTHO05D008012 7.0e-39 164.1 125 65.6
Lj5g0010745 Lotus japonicus HOM05D006467 ORTHO05D008012 4.5e-38 161.4 129 65.1
Medtr1g064490 Medicago truncatula HOM05D006467 ORTHO05D008012 4.5e-38 161.4 126 66.7
Ca_11474_v3 Cicer arietinum L. HOM05D006467 ORTHO05D008012 6.5e-37 157.5 129 63.6
TPR.G21203 Trifolium pratense HOM05D006467 ORTHO05D008012 8.6e-37 157.1 129 63.6
Phvul.007G220100 Phaseolus vulgaris HOM05D006467 ORTHO05D008012 1.1e-36 156.8 125 64.0
Cfa017565 Carpinus fangiana HOM05D006467 ORTHO05D008012 3.4e-33 145.2 126 58.7
Lalb_Chr21g0314871 Lupinus albus HOM05D006467 ORTHO05D008012 4.4e-33 144.8 129 59.7
Gohir.A04G074100 Gossypium hirsutum HOM05D006467 ORTHO05D008012 5.7e-33 144.4 128 58.6
Gohir.D09G145300 Gossypium hirsutum HOM05D006467 ORTHO05D008012 2.4e-31 139.0 122 57.4
Thecc.05G060700 Theobroma cacao HOM05D006467 ORTHO05D008012 4.1e-31 138.3 128 57.0
Dinv35529 Davidia involucrata HOM05D006467 ORTHO05D008012 7.0e-31 137.5 122 59.8
Migut.J00532 Erythranthe guttata HOM05D006467 ORTHO05D008012 9.2e-31 137.1 133 56.4
Gorai.009G417600 Gossypium raimondii HOM05D006467 ORTHO05D008012 9.2e-31 137.1 140 52.9
Dinv35757 Davidia involucrata HOM05D006467 ORTHO05D008012 2.7e-30 135.6 123 58.5
QL07p044433 Quercus lobata HOM05D006467 ORTHO05D008012 4.5e-30 134.8 125 56.8
CSS0042234 Camellia sinensis var. sinensis HOM05D006467 ORTHO05D008012 5.9e-30 134.4 124 55.6
Oeu059967.1 Olea europaea HOM05D006467 ORTHO05D008012 7.8e-30 134.0 129 55.0
SGA_v2.0_scaffold40G15542 Striga asiatica HOM05D006467 ORTHO05D008012 1.7e-29 132.9 140 52.1
Actinidia19675 Actinidia chinensis HOM05D006467 ORTHO05D008012 2.3e-29 132.5 123 57.7
Hma1.2p1_0614F.1_g189470 Hydrangea macrophylla HOM05D006467 ORTHO05D008012 2.3e-29 132.5 121 56.2
Cpa.g.sc102.12 Carica papaya HOM05D006467 ORTHO05D008012 2.9e-29 132.1 125 53.6
Ciclev10013106m.g Citrus clementina HOM05D006467 ORTHO05D008012 2.9e-29 132.1 128 53.9
Potri.016G090000 Populus trichocarpa HOM05D006467 ORTHO05D008012 5.0e-29 131.3 122 54.9
RcHm_v2.0_Chr3g0469601 Rosa chinensis HOM05D006467 ORTHO05D008012 5.0e-29 131.3 121 53.7
GSVIVG01025685001 Vitis vinifera HOM05D006467 ORTHO05D008012 6.6e-29 131.0 112 58.9
MSTRG.19165 Avicennia marina HOM05D006467 ORTHO05D008012 8.6e-29 130.6 128 53.9
Gohir.A09G149400 Gossypium hirsutum HOM05D006467 ORTHO05D008012 8.6e-29 130.6 129 52.7
MD04G1097300 Malus domestica HOM05D006467 ORTHO05D008012 1.5e-28 129.8 122 54.1
Prupe.6G236600 Prunus persica HOM05D006467 ORTHO05D008012 1.5e-28 129.8 122 54.9
FAN09G2873 Fragaria x ananassa HOM05D006467 ORTHO05D008012 1.9e-28 129.4 120 54.2
Duzib128G1557 Durio zibethinus HOM05D006467 ORTHO05D008012 2.5e-28 129.0 129 53.5
Gorai.006G166500 Gossypium raimondii HOM05D006467 ORTHO05D008012 2.5e-28 129.0 137 51.1
SalBow8G4982 Salvia bowleyana HOM05D006467 ORTHO05D008012 2.5e-28 129.0 128 55.5
Sc02g0001830 Simmondsia chinensis HOM05D006467 ORTHO05D008012 2.5e-28 129.0 125 54.4
COL.COLO4_27023 Corchorus olitorius HOM05D006467 ORTHO05D008012 3.3e-28 128.6 144 50.7
FAN14G3947 Fragaria x ananassa HOM05D006467 ORTHO05D008012 5.6e-28 127.9 120 53.3
TAR369G0155 Trochodendron aralioides HOM05D006467 ORTHO05D008012 5.6e-28 127.9 124 52.4
CiPaw.09G176000 Carya illinoinensis HOM05D006467 ORTHO05D008012 9.5e-28 127.1 126 52.4
Peaxi162Scf00123g00014 Petunia axillaris HOM05D006467 ORTHO05D008012 1.6e-27 126.3 124 53.2
Potri.006G127800 Populus trichocarpa HOM05D006467 ORTHO05D008012 2.8e-27 125.6 122 52.5
TAR623G0732 Trochodendron aralioides HOM05D006467 ORTHO05D008012 2.8e-27 125.6 126 52.4
CANSAT80G0273 Cannabis sativa HOM05D006467 ORTHO05D008012 6.1e-27 124.4 130 50.0
FAN02G4276 Fragaria x ananassa HOM05D006467 ORTHO05D008012 6.1e-27 124.4 120 52.5
HanXRQChr07g0195271 Helianthus annuus HOM05D006467 ORTHO05D008012 6.1e-27 124.4 121 54.5
Lj2A112T40 Lonicera japonica HOM05D006467 ORTHO05D008012 6.1e-27 124.4 123 52.0
Manes.08G007300 Manihot esculenta HOM05D006467 ORTHO05D008012 6.1e-27 124.4 121 53.7
AL4G33560 Arabidopsis lyrata HOM05D006467 ORTHO05D008012 8.0e-27 124.0 123 53.7
MD12G1118700 Malus domestica HOM05D006467 ORTHO05D008012 1.4e-26 123.2 122 50.8
Nitab4.5_0000101g0130 Nicotiana tabacum HOM05D006467 ORTHO05D008012 1.8e-26 122.9 124 52.4
Atru.chr8.1867 Acer truncatum HOM05D006467 ORTHO05D008012 3.0e-26 122.1 126 49.2
CAN.G888.4 Capsicum annuum HOM05D006467 ORTHO05D008012 3.0e-26 122.1 126 52.4
Sopen09g002640 Solanum pennellii HOM05D006467 ORTHO05D008012 4.0e-26 121.7 124 53.2
TWI77G0724 Tripterygium wilfordii HOM05D006467 ORTHO05D008012 4.0e-26 121.7 123 52.0
Sabra16G0095600 Salix brachista HOM05D006467 ORTHO05D008012 5.2e-26 121.3 139 48.2
FvH4_6g15910 Fragaria vesca HOM05D006467 ORTHO05D008012 6.8e-26 120.9 127 50.4
EL10Ac7g16554 Beta vulgaris HOM05D006467 ORTHO05D008012 8.9e-26 120.6 125 49.6
Lsat_1_v5_gn_2_109060 Lactuca sativa HOM05D006467 ORTHO05D008012 8.9e-26 120.6 126 48.4
Nitab4.5_0003923g0010 Nicotiana tabacum HOM05D006467 ORTHO05D008012 8.9e-26 120.6 124 52.4
Solyc09g007800.3 Solanum lycopersicum HOM05D006467 ORTHO05D008012 1.2e-25 120.2 124 52.4
THA.LOC104823447 Tarenaya hassleriana HOM05D006467 ORTHO05D008012 1.2e-25 120.2 121 51.2
PGSC0003DMG400021546 Solanum tuberosum HOM05D006467 ORTHO05D008012 1.5e-25 119.8 124 52.4
Carub.0004s1909 Capsella rubella HOM05D006467 ORTHO05D008012 2.0e-25 119.4 122 51.6
A03p20520 Brassica napus HOM05D006467 ORTHO05D008012 3.4e-25 118.6 125 51.2
BraA03t11294Z Brassica rapa HOM05D006467 ORTHO05D008012 3.4e-25 118.6 125 51.2
Gohir.D04G113200 Gossypium hirsutum HOM05D006467 ORTHO05D008012 3.4e-25 118.6 103 61.2
ECA238G0062 Erigeron canadensis HOM05D006467 ORTHO05D008012 4.4e-25 118.2 127 48.0
AT2G37195 Arabidopsis thaliana HOM05D006467 ORTHO05D008012 5.8e-25 117.9 125 49.6
vmacro20032 Vaccinium macrocarpon HOM05D006467 ORTHO05D008012 5.8e-25 117.9 156 44.9
Thhalv10017389m.g Eutrema salsugineum HOM05D006467 ORTHO05D008012 7.5e-25 117.5 125 51.2
BcaC01g06644 Brassica carinata HOM05D006467 ORTHO05D008012 9.8e-25 117.1 125 49.6
Psat6g070840 Pisum sativum HOM05D006467 ORTHO05D008012 1.3e-24 116.7 79 72.2
C03p24120 Brassica napus HOM05D006467 ORTHO05D008012 2.2e-24 115.9 125 49.6
Sp4g19510 Schrenkiella parvula HOM05D006467 ORTHO05D008012 2.2e-24 115.9 125 49.6
BolC3t14804H Brassica oleracea HOM05D006467 ORTHO05D008012 3.7e-24 115.2 126 50.0
Nn2g13105 Nelumbo nucifera HOM05D006467 ORTHO05D008012 4.9e-24 114.8 126 46.0
Aa31LG5G22520 Aethionema arabicum HOM05D006467 ORTHO05D008012 8.3e-24 114.0 122 52.5
Ah.15g092380 Amaranthus hybridus HOM05D006467 ORTHO05D008012 1.1e-23 113.6 124 49.2
AUR62033514 Chenopodium quinoa HOM05D006467 ORTHO05D008012 1.1e-23 113.6 127 48.0
MBI07_g19293_MAGBIO Magnolia biondii HOM05D006467 ORTHO05D008012 2.4e-23 112.5 131 47.3
PGR142G2369 Punica granatum HOM05D006467 ORTHO05D008012 3.2e-23 112.1 119 52.1
CARHR131710 Cardamine hirsuta HOM05D006467 ORTHO05D008012 5.4e-23 111.3 124 50.8
AUR62028561 Chenopodium quinoa HOM05D006467 ORTHO05D008012 7.0e-23 110.9 126 47.6
Haze_20589 Corylus avellana HOM05D006467 ORTHO05D008012 1.2e-22 110.2 76 65.8
PSO063G5019 Papaver somniferum HOM05D006467 ORTHO05D008012 1.2e-22 110.2 128 46.9
PSO339G1849 Papaver somniferum HOM05D006467 ORTHO05D008012 1.2e-22 110.2 128 46.9
Aqoxy1G01232 Aquilegia oxysepala HOM05D006467 ORTHO05D008012 1.6e-22 109.8 123 46.3
Cc06_g03930 Coffea canephora HOM05D006467 ORTHO05D008012 2.0e-22 109.4 112 50.0
MELO3C009340.2 Cucumis melo HOM05D006467 ORTHO05D008012 7.8e-22 107.5 124 45.2
Dinv37285 Davidia involucrata HOM05D006467 ORTHO05D008012 1.0e-21 107.1 80 65.0
Nn2g10804 Nelumbo nucifera HOM05D006467 ORTHO05D008012 1.0e-21 107.1 118 45.8
CsaV3_3G035800 Cucumis sativus L. HOM05D006467 ORTHO05D008012 3.0e-21 105.5 124 45.2
Sabra06G0100500 Salix brachista HOM05D006467 ORTHO05D008012 6.6e-21 104.4 159 40.3
ClCG10G020300 Citrullus lanatus HOM05D006467 ORTHO05D008012 9.5e-20 100.5 124 42.7
Sed0017827 Sechium edule HOM05D006467 ORTHO05D008012 3.6e-19 98.6 124 43.5
DCAR_009295 Daucus carota HOM05D006467 ORTHO05D008012 6.2e-19 97.8 73 60.3
Eucgr.K03249 Eucalyptus grandis HOM05D006467 ORTHO05D008012 2.6e-17 92.4 101 46.5
Zm00001eb258270 Zea mays HOM05D006467 ORTHO05D008012 7.5e-17 90.9 126 42.9
Hund20246 Selenicereus undatus HOM05D006467 ORTHO05D008012 9.8e-17 90.5 72 56.9
HPP92_022407 Vanilla planifolia HOM05D006467 ORTHO05D008012 2.9e-16 89.0 125 41.6
HPP92_027503 Vanilla planifolia HOM05D006467 ORTHO05D008012 4.9e-16 88.2 122 41.0
Zm00001eb191980 Zea mays HOM05D006467 ORTHO05D008012 3.2e-15 85.5 126 39.7
unitig_27.g25371 Utricularia gibba HOM05D006467 ORTHO05D008012 1.6e-14 83.2 76 51.3
Os02g0805700 Oryza sativa ssp. japonica HOM05D006467 ORTHO05D008012 4.6e-14 81.6 122 39.3
arahy.Tifrunner.gnm1.ann1.Q46SAL Arachis hypogaea HOM05D006467 ORTHO05D008012 2.3e-13 79.3 44 93.2
BcaC03g13318 Brassica carinata HOM05D006467 ORTHO05D008012 1.5e-12 76.6 90 47.8
BcaC03g13319 Brassica carinata HOM05D006467 ORTHO05D008012 1.5e-12 76.6 90 47.8
FvH4_1g27957 Fragaria vesca HOM05D000871 ORTHO05D008012 4.7e-11 71.6 83 48.2
C07p17010 Brassica napus HOM05D006467 ORTHO05D008012 6.2e-11 71.2 83 49.4
C02p04540 Brassica napus HOM05D006467 ORTHO05D008012 1.1e-10 70.5 83 49.4
ATR0048G054 Amborella trichopoda HOM05D006467 ORTHO05D008012 2.3e-10 69.3 99 37.4
BolC1t01590H Brassica oleracea HOM05D006467 ORTHO05D008012 6.8e-10 67.8 83 48.2
C06p12980 Brassica napus HOM05D006467 ORTHO05D008012 8.9e-10 67.4 82 47.6
arahy.Tifrunner.gnm1.ann1.LA4XPU Arachis hypogaea HOM05D006467 ORTHO05D008012 1.3e-08 63.5 33 90.9
FvH4_1g28030 Fragaria vesca HOM05D000871 ORTHO05D008012 1.7e-08 63.2 62 53.2
BcaC08g43911 Brassica carinata HOM05D006467 ORTHO05D008012 2.4e-07 59.3 47 63.8
FAN26G0965 Fragaria x ananassa HOM05D000871 ORTHO05D011596 4.6e-06 55.1 38 60.5
PSO063G7135 Papaver somniferum HOM05D000530 ORTHO05D000621 7.8e-06 54.3 39 61.5


User provided reference genes

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