Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.HL4A43 Arachis hypogaea HOM05D005827 ORTHO05D005864 6.2e-135 484.6 333 100.0
arahy.Tifrunner.gnm1.ann1.M92LVR Arachis hypogaea HOM05D005827 ORTHO05D005864 1.7e-108 396.7 334 73.1
Lalb_Chr21g0308391 Lupinus albus HOM05D005827 ORTHO05D005864 5.8e-40 169.1 155 63.2
arahy.Tifrunner.gnm1.ann1.5875FQ Arachis hypogaea HOM05D005570 ORTHO05D005864 2.9e-31 140.2 77 94.8
Ca_30413_v3 Cicer arietinum L. HOM05D005827 ORTHO05D005864 6.4e-31 139.0 157 54.1
Potri.009G097000 Populus trichocarpa HOM05D005827 ORTHO05D005864 1.1e-30 138.3 156 55.8
arahy.Tifrunner.gnm1.ann1.JXA9IA Arachis hypogaea HOM05D005570 ORTHO05D005864 2.4e-30 137.1 77 93.5
Duzib132G0170 Durio zibethinus HOM05D005827 ORTHO05D005864 2.4e-30 137.1 156 53.2
Glyma.12G113700 Glycine max HOM05D005827 ORTHO05D005864 3.2e-30 136.7 155 56.8
arahy.Tifrunner.gnm1.ann1.3JDG4T Arachis hypogaea HOM05D004210 ORTHO05D005017 4.2e-30 136.3 77 92.2
arahy.Tifrunner.gnm1.ann1.093KP0 Arachis hypogaea HOM05D002360 ORTHO05D006297 5.4e-30 136.0 77 92.2
Thecc.02G106700 Theobroma cacao HOM05D005827 ORTHO05D005864 7.1e-30 135.6 133 57.9
arahy.Tifrunner.gnm1.ann1.TQSI6C Arachis hypogaea HOM05D005570 ORTHO05D005864 9.3e-30 135.2 77 92.2
Manes.10G074300 Manihot esculenta HOM05D005827 ORTHO05D005864 9.3e-30 135.2 153 51.0
arahy.Tifrunner.gnm1.ann1.H72Z00 Arachis hypogaea HOM05D003946 ORTHO05D005257 1.2e-29 134.8 77 92.2
Phvul.007G038800 Phaseolus vulgaris HOM05D005827 ORTHO05D005864 1.6e-29 134.4 155 53.5
arahy.Tifrunner.gnm1.ann1.9489MQ Arachis hypogaea HOM05D006218 ORTHO05D007338 2.7e-29 133.7 77 90.9
arahy.Tifrunner.gnm1.ann1.18Q938 Arachis hypogaea HOM05D005570 ORTHO05D007368 6.0e-29 132.5 86 88.4
Cpa.g.sc246.10 Carica papaya HOM05D005827 ORTHO05D005864 7.9e-29 132.1 154 55.8
arahy.Tifrunner.gnm1.ann1.4MR6LE Arachis hypogaea HOM05D003336 ORTHO05D003807 1.3e-28 131.3 87 82.8
Atru.chr5.2579 Acer truncatum HOM05D005827 ORTHO05D005864 1.7e-28 131.0 155 55.5
arahy.Tifrunner.gnm1.ann1.HN7X2L Arachis hypogaea HOM05D003336 ORTHO05D003807 2.3e-28 130.6 84 84.5
MD15G1423200 Malus domestica HOM05D005827 ORTHO05D005864 5.1e-28 129.4 155 51.6
Haze_10160 Corylus avellana HOM05D005827 ORTHO05D005864 8.7e-28 128.6 133 56.4
Ca_06388_v3 Cicer arietinum L. HOM05D005827 ORTHO05D005864 2.5e-27 127.1 128 58.6
arahy.Tifrunner.gnm1.ann1.TY68CU Arachis hypogaea HOM05D005314 ORTHO05D005864 5.6e-27 125.9 77 87.0
Nitab4.5_0011210g0030 Nicotiana tabacum HOM05D000771 ORTHO05D005864 7.3e-27 125.6 153 47.1
THA.LOC104823732 Tarenaya hassleriana HOM05D005827 ORTHO05D005864 7.3e-27 125.6 153 49.7
Nn1g04717 Nelumbo nucifera HOM05D005827 ORTHO05D005864 1.3e-26 124.8 153 53.6
Peaxi162Scf00880g00322 Petunia axillaris HOM05D005827 ORTHO05D005864 1.3e-26 124.8 154 50.6
ClCG04G002790 Citrullus lanatus HOM05D005827 ORTHO05D005864 1.6e-26 124.4 155 50.3
Nitab4.5_0000209g0220 Nicotiana tabacum HOM05D005827 ORTHO05D005864 1.6e-26 124.4 154 46.1
Gorai.005G235500 Gossypium raimondii HOM05D005827 ORTHO05D005864 2.1e-26 124.0 127 56.7
Eucgr.G01363 Eucalyptus grandis HOM05D005827 ORTHO05D005864 2.8e-26 123.6 152 48.7
Hma1.2p1_0796F.1_g219120 Hydrangea macrophylla HOM05D005827 ORTHO05D005864 2.8e-26 123.6 151 51.0
Sopen12g028550 Solanum pennellii HOM05D005827 ORTHO05D005864 2.8e-26 123.6 154 45.5
arahy.Tifrunner.gnm1.ann1.C5PCA3 Arachis hypogaea HOM05D007788 ORTHO05D008462 3.6e-26 123.2 74 83.8
PGSC0003DMG400005012 Solanum tuberosum HOM05D005827 ORTHO05D005864 3.6e-26 123.2 154 45.5
FAN04G0262 Fragaria x ananassa HOM05D005827 ORTHO05D005864 4.8e-26 122.9 133 50.4
CANSAT11G0172 Cannabis sativa HOM05D005827 ORTHO05D005864 6.2e-26 122.5 122 54.1
TAR625G0497 Trochodendron aralioides HOM05D005827 ORTHO05D005864 6.2e-26 122.5 157 52.9
TAR625G1254 Trochodendron aralioides HOM05D005827 ORTHO05D005864 6.2e-26 122.5 157 52.9
Gohir.A03G186800 Gossypium hirsutum HOM05D005827 ORTHO05D005864 8.1e-26 122.1 127 55.9
Gohir.D02G207600 Gossypium hirsutum HOM05D005827 ORTHO05D005864 8.1e-26 122.1 127 55.9
CiPaw.06G170100 Carya illinoinensis HOM05D005827 ORTHO05D005864 1.4e-25 121.3 143 50.3
Dinv15756 Davidia involucrata HOM05D005827 ORTHO05D005864 1.4e-25 121.3 152 46.1
Nitab4.5_0001647g0080 Nicotiana tabacum HOM05D005827 ORTHO05D005864 1.4e-25 121.3 135 50.4
arahy.Tifrunner.gnm1.ann1.CPK3HX Arachis hypogaea HOM05D005570 ORTHO05D007368 2.4e-25 120.6 83 79.5
Sc08g0001470 Simmondsia chinensis HOM05D005827 ORTHO05D005864 2.4e-25 120.6 130 53.1
Glyma.20G127400 Glycine max HOM05D005827 ORTHO05D005864 4.0e-25 119.8 155 56.1
Solyc12g056030.2 Solanum lycopersicum HOM05D005827 ORTHO05D005864 4.0e-25 119.8 154 44.2
Rhsim11G0160600 Rhododendron simsii HOM05D005827 ORTHO05D005864 5.3e-25 119.4 148 46.6
COL.COLO4_32605 Corchorus olitorius HOM05D005827 ORTHO05D005864 6.9e-25 119.0 159 49.7
Sabra09G0074600 Salix brachista HOM05D005827 ORTHO05D005864 6.9e-25 119.0 155 51.0
C02p49840 Brassica napus HOM05D005827 ORTHO05D005864 9.0e-25 118.6 133 50.4
CSS0006486 Camellia sinensis var. sinensis HOM05D005827 ORTHO05D005864 9.0e-25 118.6 151 47.0
FAN18G4374 Fragaria x ananassa HOM05D005827 ORTHO05D005864 1.2e-24 118.2 124 50.8
Prupe.1G568500 Prunus persica HOM05D005827 ORTHO05D005864 1.2e-24 118.2 155 46.5
CAN.G517.16 Capsicum annuum HOM05D005827 ORTHO05D005864 1.5e-24 117.9 154 44.8
FAN08G1793 Fragaria x ananassa HOM05D005827 ORTHO05D005864 1.5e-24 117.9 124 50.8
BcaC03g17064 Brassica carinata HOM05D005827 ORTHO05D005864 2.6e-24 117.1 133 49.6
FvH4_5g29540 Fragaria vesca HOM05D005827 ORTHO05D005864 2.6e-24 117.1 124 50.8
FAN13G0291 Fragaria x ananassa HOM05D005827 ORTHO05D005864 2.6e-24 117.1 123 51.2
EL10Ac9g22299 Beta vulgaris HOM05D005827 ORTHO05D005864 3.4e-24 116.7 154 48.7
QL11p034047 Quercus lobata HOM05D005827 ORTHO05D005864 3.4e-24 116.7 126 52.4
A02p32240 Brassica napus HOM05D005827 ORTHO05D005864 4.5e-24 116.3 133 49.6
BraA02t08240Z Brassica rapa HOM05D005827 ORTHO05D005864 4.5e-24 116.3 133 49.6
AUR62010278 Chenopodium quinoa HOM05D005827 ORTHO05D005864 4.5e-24 116.3 154 49.4
QL11p033993 Quercus lobata HOM05D005827 ORTHO05D005864 4.5e-24 116.3 127 54.3
Sabra09G0074500 Salix brachista HOM05D005827 ORTHO05D005864 4.5e-24 116.3 191 44.0
Sed0003004 Sechium edule HOM05D005827 ORTHO05D005864 4.5e-24 116.3 157 48.4
Carub.0005s0059 Capsella rubella HOM05D005827 ORTHO05D005864 5.8e-24 115.9 146 47.9
Cc02_g19170 Coffea canephora HOM05D005827 ORTHO05D005864 5.8e-24 115.9 131 48.9
CsaV3_4G029930 Cucumis sativus L. HOM05D005827 ORTHO05D005864 5.8e-24 115.9 132 50.8
BolC2t11063H Brassica oleracea HOM05D005827 ORTHO05D005864 7.6e-24 115.5 133 48.9
PSO170G4182 Papaver somniferum HOM05D005827 ORTHO05D005864 1.3e-23 114.8 153 49.7
vmacro14445 Vaccinium macrocarpon HOM05D005827 ORTHO05D005864 1.3e-23 114.8 150 46.7
Zm00001eb133530 Zea mays HOM05D005827 ORTHO05D005864 1.3e-23 114.8 122 52.5
BcaB07g30381 Brassica carinata HOM05D005827 ORTHO05D005864 2.2e-23 114.0 133 48.9
DCAR_029081 Daucus carota HOM05D005827 ORTHO05D005864 2.2e-23 114.0 152 47.4
Aqoxy5G03364 Aquilegia oxysepala HOM05D005827 ORTHO05D005864 2.9e-23 113.6 155 45.8
RcHm_v2.0_Chr7g0222441 Rosa chinensis HOM05D005827 ORTHO05D005864 2.9e-23 113.6 124 51.6
HPP92_026144 Vanilla planifolia HOM05D005827 ORTHO05D005864 6.4e-23 112.5 149 47.0
MD08G1229200 Malus domestica HOM05D005827 ORTHO05D005864 8.4e-23 112.1 137 48.9
PSO210G1068 Papaver somniferum HOM05D005827 ORTHO05D005864 2.4e-22 110.5 152 46.7
Sp2g13090 Schrenkiella parvula HOM05D005827 ORTHO05D005864 2.4e-22 110.5 148 46.6
ECA234G2840 Erigeron canadensis HOM05D005827 ORTHO05D005864 9.3e-22 108.6 127 49.6
Migut.N01172 Erythranthe guttata HOM05D005827 ORTHO05D005864 9.3e-22 108.6 153 45.8
Lj9A321T79 Lonicera japonica HOM05D005827 ORTHO05D005864 1.2e-21 108.2 191 39.8
Lsat_1_v5_gn_5_114720 Lactuca sativa HOM05D005827 ORTHO05D005864 2.1e-21 107.5 132 49.2
GSVIVG01003168001 Vitis vinifera HOM05D005827 ORTHO05D005864 2.1e-21 107.5 153 49.0
HanXRQChr16g0514881 Helianthus annuus HOM05D005827 ORTHO05D005864 3.5e-21 106.7 148 45.3
Os12g0244500 Oryza sativa ssp. japonica HOM05D005827 ORTHO05D005864 7.9e-21 105.5 118 50.8
arahy.Tifrunner.gnm1.ann1.NQ2DUC Arachis hypogaea HOM05D005570 ORTHO05D005864 1.0e-20 105.1 81 70.4
MSTRG.27741 Avicennia marina HOM05D005827 ORTHO05D005864 1.0e-20 105.1 131 46.6
Psat6g219720 Pisum sativum HOM05D005827 ORTHO05D005864 1.3e-20 104.8 162 43.2
PGR042G1992 Punica granatum HOM05D005827 ORTHO05D005864 2.3e-20 104.0 126 49.2
MELO3C003274.2 Cucumis melo HOM05D005827 ORTHO05D005864 8.7e-20 102.1 137 47.4
Ciclev10030223m.g Citrus clementina HOM05D005827 ORTHO05D005864 1.1e-19 101.7 118 50.8
TWI31G0230 Tripterygium wilfordii HOM05D005827 ORTHO05D005864 1.5e-19 101.3 152 46.1
Thhalv10005665m.g Eutrema salsugineum HOM05D005827 ORTHO05D005864 2.5e-19 100.5 188 39.4
Eucgr.H03226 Eucalyptus grandis HOM05D005827 ORTHO05D005864 7.4e-19 99.0 120 50.8
arahy.Tifrunner.gnm1.ann1.4C0J8W Arachis hypogaea HOM05D000001 ORTHO05D001705 1.6e-18 97.8 84 69.0
AT2G01640 Arabidopsis thaliana HOM05D005827 ORTHO05D005864 2.1e-18 97.4 122 45.9
Aa31LG2G8260 Aethionema arabicum HOM05D005827 ORTHO05D005864 6.2e-18 95.9 120 45.8
TAR381G1673 Trochodendron aralioides HOM05D005827 ORTHO05D005864 6.2e-18 95.9 138 50.7
CDE01G0172 Ceratophyllum demersum HOM05D005827 ORTHO05D005864 8.1e-18 95.5 153 39.9
AL5G10740 Arabidopsis lyrata HOM05D005827 ORTHO05D005864 1.1e-17 95.1 117 46.2
Lj3g0023632 Lotus japonicus HOM05D005827 ORTHO05D005864 1.1e-17 95.1 110 54.5
Lj5g0000760 Lotus japonicus HOM05D005827 ORTHO05D005864 1.1e-17 95.1 110 53.6
Hund00127 Selenicereus undatus HOM05D005827 ORTHO05D005864 3.1e-17 93.6 102 52.0
Medtr1g107495 Medicago truncatula HOM05D005827 ORTHO05D005864 1.2e-16 91.7 114 53.5
Hund00128 Selenicereus undatus HOM05D005827 ORTHO05D005864 1.2e-16 91.7 103 50.5
SGA_v2.0_scaffold393G50707 Striga asiatica HOM05D005827 ORTHO05D005864 7.6e-16 89.0 153 36.6
Actinidia00415 Actinidia chinensis HOM05D005827 ORTHO05D005864 1.3e-15 88.2 90 55.6
SalBow3G3341 Salvia bowleyana HOM05D005827 ORTHO05D005864 2.2e-15 87.4 138 37.7
arahy.Tifrunner.gnm1.ann1.411P2H Arachis hypogaea HOM05D001273 ORTHO05D000023 3.8e-15 86.7 61 82.0
SGA_v2.0_scaffold42G16001 Striga asiatica HOM05D005827 ORTHO05D005864 6.5e-15 85.9 153 37.3
ATR0827G109 Amborella trichopoda HOM05D005827 ORTHO05D005864 7.1e-14 82.4 116 40.5
arahy.Tifrunner.gnm1.ann1.TDW0BY Arachis hypogaea HOM05D005185 ORTHO05D006075 3.5e-13 80.1 49 87.8
Nn2g12688 Nelumbo nucifera HOM05D005827 ORTHO05D005864 3.5e-13 80.1 86 54.7
MELO3C033554.2 Cucumis melo HOM05D005827 ORTHO05D005864 4.6e-13 79.7 140 39.3
arahy.Tifrunner.gnm1.ann1.NDR98S Arachis hypogaea HOM05D000257 ORTHO05D008527 7.9e-13 79.0 72 70.8
arahy.Tifrunner.gnm1.ann1.XZE3L4 Arachis hypogaea HOM05D000001 ORTHO05D001705 3.9e-12 76.6 44 90.9
arahy.Tifrunner.gnm1.ann1.QLC8G3 Arachis hypogaea HOM05D010382 ORTHO05D005864 5.1e-12 76.3 44 88.6
TPR.G13876 Trifolium pratense HOM05D005827 ORTHO05D005864 5.1e-12 76.3 116 40.5
arahy.Tifrunner.gnm1.ann1.N9VQ32 Arachis hypogaea HOM05D002986 ORTHO05D003966 1.5e-11 74.7 49 81.6
arahy.Tifrunner.gnm1.ann1.A2CAGE Arachis hypogaea HOM05D010382 ORTHO05D005864 2.5e-11 73.9 49 81.6
unitig_94.g28296 Utricularia gibba HOM05D005827 ORTHO05D005864 3.3e-11 73.6 149 32.2
unitig_94.g28309 Utricularia gibba HOM05D005827 ORTHO05D005864 3.3e-11 73.6 149 32.2
Aa31sc215G30 Aethionema arabicum HOM05D005827 ORTHO05D005864 4.3e-11 73.2 100 41.0
arahy.Tifrunner.gnm1.ann1.Y9P708 Arachis hypogaea HOM05D000386 ORTHO05D000406 5.7e-11 72.8 101 48.5
arahy.Tifrunner.gnm1.ann1.RXW997 Arachis hypogaea HOM05D003997 ORTHO05D002698 7.4e-11 72.4 85 55.3
arahy.Tifrunner.gnm1.ann1.9VNC38 Arachis hypogaea HOM05D005570 ORTHO05D005864 1.6e-10 71.2 44 88.6
Zm00001eb350190 Zea mays HOM05D005827 ORTHO05D005864 1.6e-10 71.2 128 40.6
SEGI_38856 Sequoiadendron giganteum HOM05D005827 ORTHO05D005864 2.1e-10 70.9 167 32.9
Zm00001eb207600 Zea mays HOM05D005827 ORTHO05D005864 3.7e-10 70.1 104 42.3
AUR62039111 Chenopodium quinoa HOM05D005827 ORTHO05D005864 4.8e-10 69.7 75 48.0
AUR62044681 Chenopodium quinoa HOM05D005827 ORTHO05D005864 4.8e-10 69.7 77 46.8
Zm00001eb006370 Zea mays HOM05D005827 ORTHO05D005864 4.8e-10 69.7 90 46.7
Mapoly0052s0016 Marchantia polymorpha HOM05D005827 ORTHO05D005864 2.4e-09 67.4 149 34.2
arahy.Tifrunner.gnm1.ann1.D5DAI6 Arachis hypogaea HOM05D005980 ORTHO05D007618 4.1e-09 66.6 37 91.9
Zm00001eb324360 Zea mays HOM05D005827 ORTHO05D005864 4.1e-09 66.6 109 39.4
ATR0691G195 Amborella trichopoda HOM05D005827 ORTHO05D005864 9.0e-09 65.5 74 45.9
Zm00001eb259520 Zea mays HOM05D005827 ORTHO05D005864 1.2e-08 65.1 100 43.0
Pp3c21_2370 Physcomitrium patens HOM05D005827 ORTHO05D005864 1.5e-08 64.7 114 37.7
QL11p034007 Quercus lobata HOM05D005827 ORTHO05D005864 1.5e-08 64.7 78 44.9
CiPaw.07G088900 Carya illinoinensis HOM05D005827 ORTHO05D005864 2.6e-08 63.9 89 40.4
arahy.Tifrunner.gnm1.ann1.A4B6B0 Arachis hypogaea HOM05D002504 ORTHO05D007555 7.6e-08 62.4 46 76.1
arahy.Tifrunner.gnm1.ann1.WQI89G Arachis hypogaea HOM05D002504 ORTHO05D007555 7.6e-08 62.4 46 76.1
Zm00001eb324920 Zea mays HOM05D005827 ORTHO05D005864 7.6e-08 62.4 100 44.0
AagrBONN_evm.TU.Sc2ySwM_228.4380 Anthoceros agrestis HOM05D005827 ORTHO05D005864 1.7e-07 61.2 95 45.3
Zm00001eb091410 Zea mays HOM05D005827 ORTHO05D005864 1.7e-07 61.2 124 38.7
SMO364G0308 Selaginella moellendorffii HOM05D005827 ORTHO05D000003 3.8e-07 60.1 123 34.1
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 5.0e-07 59.7 71 56.3
CANSAT25G3357 Cannabis sativa HOM05D005827 ORTHO05D005864 5.0e-07 59.7 59 47.5
arahy.Tifrunner.gnm1.ann1.3317JQ Arachis hypogaea HOM05D006579 ORTHO05D007783 1.4e-06 58.2 53 67.9
arahy.Tifrunner.gnm1.ann1.JHWM2T Arachis hypogaea HOM05D000384 ORTHO05D006260 3.2e-06 57.0 86 46.5
arahy.Tifrunner.gnm1.ann1.HAI34B Arachis hypogaea HOM05D005194 ORTHO05D003357 5.5e-06 56.2 39 82.1


User provided reference genes

Program Settings