Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.HKF9H0 Arachis hypogaea HOM05D001695 ORTHO05D002735 2.8e-129 465.3 237 100.0
arahy.Tifrunner.gnm1.ann1.AGX1S0 Arachis hypogaea HOM05D001695 ORTHO05D002735 1.9e-69 266.5 258 65.1
Ca_16296_v3 Cicer arietinum L. HOM05D001695 ORTHO05D002735 3.6e-60 235.7 275 53.8
Glyma.13G001100 Glycine max HOM05D001695 ORTHO05D002735 9.8e-58 227.6 274 52.2
Lj6g0013848 Lotus japonicus HOM05D001695 ORTHO05D002735 1.3e-57 227.3 275 53.8
QL02p027749 Quercus lobata HOM05D001695 ORTHO05D002735 1.7e-57 226.9 273 51.6
Glyma.02G088200 Glycine max HOM05D001695 ORTHO05D002735 2.2e-57 226.5 274 51.8
PGR031G0821 Punica granatum HOM05D001695 ORTHO05D002735 6.3e-57 224.9 243 55.1
Psat5g110120 Pisum sativum HOM05D001695 ORTHO05D002735 8.3e-57 224.6 276 52.9
Medtr3g080840 Medicago truncatula HOM05D001695 ORTHO05D002735 1.4e-56 223.8 287 53.0
TPR.G21319 Trifolium pratense HOM05D001695 ORTHO05D002735 3.1e-56 222.6 276 52.5
Ciclev10021724m.g Citrus clementina HOM05D001695 ORTHO05D002735 4.1e-56 222.2 275 52.0
FvH4_5g10820 Fragaria vesca HOM05D001695 ORTHO05D002735 2.7e-55 219.5 274 50.0
FAN18G1376 Fragaria x ananassa HOM05D001695 ORTHO05D002735 7.7e-55 218.0 274 49.6
FAN13G1073 Fragaria x ananassa HOM05D001695 ORTHO05D002735 1.3e-54 217.2 274 49.6
VMungo0540G1432 Vigna mungo HOM05D001695 ORTHO05D002735 1.7e-54 216.9 272 50.0
FAN04G1351 Fragaria x ananassa HOM05D001695 ORTHO05D002735 3.8e-54 215.7 274 49.3
Phvul.006G009940 Phaseolus vulgaris HOM05D001695 ORTHO05D002735 3.8e-54 215.7 238 54.6
Prupe.5G131200 Prunus persica HOM05D001695 ORTHO05D002735 3.8e-54 215.7 274 50.7
Nn1g00413 Nelumbo nucifera HOM05D001695 ORTHO05D002735 1.1e-53 214.2 274 51.1
FAN08G2153 Fragaria x ananassa HOM05D001695 ORTHO05D002735 1.5e-53 213.8 274 48.9
RcHm_v2.0_Chr7g0187341 Rosa chinensis HOM05D001695 ORTHO05D002735 2.5e-53 213.0 274 48.9
Lalb_Chr24g0402771 Lupinus albus HOM05D001695 ORTHO05D002735 1.2e-52 210.7 274 48.9
MD14G1137300 Malus domestica HOM05D001695 ORTHO05D002735 1.2e-52 210.7 275 49.1
Haze_09183 Corylus avellana HOM05D001695 ORTHO05D002735 4.7e-52 208.8 274 50.7
Oeu010736.1 Olea europaea HOM05D001695 ORTHO05D002735 4.7e-52 208.8 274 49.3
Rhsim07G0077100 Rhododendron simsii HOM05D001695 ORTHO05D002735 3.0e-51 206.1 280 50.0
CiPaw.12G076600 Carya illinoinensis HOM05D001695 ORTHO05D002735 4.0e-51 205.7 274 50.0
Lj2A156T52 Lonicera japonica HOM05D001695 ORTHO05D002735 4.0e-51 205.7 278 50.0
vmacro13844 Vaccinium macrocarpon HOM05D001695 ORTHO05D002735 6.8e-51 204.9 274 49.6
TAR629G0227 Trochodendron aralioides HOM05D001695 ORTHO05D002735 8.9e-51 204.5 274 48.2
Thecc.03G219900 Theobroma cacao HOM05D001695 ORTHO05D002735 1.5e-50 203.8 274 49.3
AUR62019928 Chenopodium quinoa HOM05D001695 ORTHO05D002735 2.0e-50 203.4 278 47.8
Eucgr.D01676 Eucalyptus grandis HOM05D001695 ORTHO05D002735 2.0e-50 203.4 243 51.4
HanXRQChr03g0085241 Helianthus annuus HOM05D001695 ORTHO05D002735 5.7e-50 201.8 279 47.7
COL.COLO4_10808 Corchorus olitorius HOM05D001695 ORTHO05D002735 9.8e-50 201.1 243 51.9
Nitab4.5_0000673g0210 Nicotiana tabacum HOM05D001695 ORTHO05D002735 1.3e-49 200.7 261 49.4
Aqoxy7G00010 Aquilegia oxysepala HOM05D001695 ORTHO05D002735 1.7e-49 200.3 274 48.5
DCAR_006556 Daucus carota HOM05D001695 ORTHO05D002735 2.8e-49 199.5 256 49.6
Lsat_1_v5_gn_6_81741 Lactuca sativa HOM05D001695 ORTHO05D002735 4.9e-49 198.7 277 47.7
PGSC0003DMG402005859 Solanum tuberosum HOM05D001695 ORTHO05D002735 4.9e-49 198.7 237 51.1
Actinidia27283 Actinidia chinensis HOM05D001695 ORTHO05D002735 8.3e-49 198.0 275 47.3
ClCG10G000790 Citrullus lanatus HOM05D001695 ORTHO05D002735 8.3e-49 198.0 237 49.4
Manes.02G002100 Manihot esculenta HOM05D001695 ORTHO05D002735 8.3e-49 198.0 274 47.1
Solyc08g008630.4 Solanum lycopersicum HOM05D001695 ORTHO05D002735 8.3e-49 198.0 281 46.6
CANSAT21G0810 Cannabis sativa HOM05D001695 ORTHO05D002735 1.4e-48 197.2 274 48.9
CAN.G792.21 Capsicum annuum HOM05D001695 ORTHO05D002735 1.4e-48 197.2 237 51.1
AUR62007063 Chenopodium quinoa HOM05D001695 ORTHO05D002735 1.8e-48 196.8 276 46.0
Sp2g00880 Schrenkiella parvula HOM05D001695 ORTHO05D002735 1.8e-48 196.8 247 49.4
TWI60G1658 Tripterygium wilfordii HOM05D001695 ORTHO05D002735 2.4e-48 196.4 268 49.6
Sopen08g004470 Solanum pennellii HOM05D001695 ORTHO05D002735 3.2e-48 196.1 237 50.6
Potri.001G083300 Populus trichocarpa HOM05D001695 ORTHO05D002735 4.1e-48 195.7 238 51.3
Sc01g0010750 Simmondsia chinensis HOM05D001695 ORTHO05D002735 4.1e-48 195.7 278 48.2
Atru.chr9.1867 Acer truncatum HOM05D001695 ORTHO05D002735 1.6e-47 193.7 275 47.6
PSO135G0900 Papaver somniferum HOM05D001695 ORTHO05D002735 1.6e-47 193.7 248 48.8
MSTRG.13709 Avicennia marina HOM05D001695 ORTHO05D002735 4.5e-47 192.2 276 49.3
BcaC04g22681 Brassica carinata HOM05D001695 ORTHO05D002735 4.5e-47 192.2 246 48.4
C09p16720 Brassica napus HOM05D001695 ORTHO05D002735 4.5e-47 192.2 246 48.4
BolC9t54572H Brassica oleracea HOM05D001695 ORTHO05D002735 4.5e-47 192.2 246 48.4
CSS0020159 Camellia sinensis var. sinensis HOM05D001695 ORTHO05D002735 4.5e-47 192.2 284 48.2
A09p13940 Brassica napus HOM05D001695 ORTHO05D002735 5.9e-47 191.8 246 48.0
Thhalv10023652m.g Eutrema salsugineum HOM05D001695 ORTHO05D002735 5.9e-47 191.8 244 48.8
THA.LOC104817401 Tarenaya hassleriana HOM05D001695 ORTHO05D002735 5.9e-47 191.8 238 49.2
BcaB07g31412 Brassica carinata HOM05D001695 ORTHO05D002735 7.8e-47 191.4 261 46.7
BraA09t37040Z Brassica rapa HOM05D001695 ORTHO05D002735 7.8e-47 191.4 246 48.0
Cpa.g.sc15.141 Carica papaya HOM05D001695 ORTHO05D002735 1.0e-46 191.0 272 47.8
BcaB07g31548 Brassica carinata HOM05D001695 ORTHO05D002735 1.3e-46 190.7 246 48.0
BraA09t37174Z Brassica rapa HOM05D001695 ORTHO05D002735 1.3e-46 190.7 248 47.6
Cfa011915 Carpinus fangiana HOM05D001695 ORTHO05D002735 1.3e-46 190.7 240 51.7
CsaV3_3G000840 Cucumis sativus L. HOM05D001695 ORTHO05D002735 1.3e-46 190.7 272 46.7
A09p15280 Brassica napus HOM05D001695 ORTHO05D002735 2.3e-46 189.9 248 48.0
CARHR046210 Cardamine hirsuta HOM05D001695 ORTHO05D002735 2.9e-46 189.5 244 47.5
CDE11G0902 Ceratophyllum demersum HOM05D001695 ORTHO05D002735 2.9e-46 189.5 239 49.8
Carub.0002s0005 Capsella rubella HOM05D001695 ORTHO05D002735 3.9e-46 189.1 244 48.0
Hund02284 Selenicereus undatus HOM05D001695 ORTHO05D002735 6.6e-46 188.3 272 46.7
AL2G10080 Arabidopsis lyrata HOM05D001695 ORTHO05D002735 1.1e-45 187.6 244 48.8
Aa31LG2G1720 Aethionema arabicum HOM05D001695 ORTHO05D002735 1.5e-45 187.2 235 48.9
Gohir.D03G085266 Gossypium hirsutum HOM05D001695 ORTHO05D002735 3.3e-45 186.0 243 50.6
Gorai.003G077200 Gossypium raimondii HOM05D001695 ORTHO05D002735 3.3e-45 186.0 243 50.6
Nitab4.5_0005544g0020 Nicotiana tabacum HOM05D001695 ORTHO05D002735 4.3e-45 185.7 231 49.4
AT1G64680 Arabidopsis thaliana HOM05D001695 ORTHO05D002735 9.5e-45 184.5 244 48.0
Gohir.A02G098400 Gossypium hirsutum HOM05D001695 ORTHO05D002735 1.2e-44 184.1 243 49.4
BcaC04g22506 Brassica carinata HOM05D001695 ORTHO05D002735 2.1e-44 183.3 248 48.0
BolC9t54752H Brassica oleracea HOM05D001695 ORTHO05D002735 2.1e-44 183.3 248 48.0
Hma1.2p1_0456F.1_g156720 Hydrangea macrophylla HOM05D001695 ORTHO05D002735 2.1e-44 183.3 245 50.6
Sed0011976 Sechium edule HOM05D001695 ORTHO05D002735 2.8e-44 183.0 276 46.4
C09p18560 Brassica napus HOM05D001695 ORTHO05D002735 8.0e-44 181.4 248 48.0
Sabra01G0059900 Salix brachista HOM05D001695 ORTHO05D002735 1.0e-43 181.0 281 43.1
EL10Ac5g12416 Beta vulgaris HOM05D001695 ORTHO05D002735 2.3e-43 179.9 293 41.6
Peaxi162Scf01257g00030 Petunia axillaris HOM05D001695 ORTHO05D002735 4.0e-43 179.1 258 47.7
ATR0579G157 Amborella trichopoda HOM05D001695 ORTHO05D002735 1.5e-42 177.2 259 48.3
ECA240G2548 Erigeron canadensis HOM05D001695 ORTHO05D002735 2.0e-42 176.8 227 49.3
Migut.E00301 Erythranthe guttata HOM05D001695 ORTHO05D002735 2.6e-42 176.4 286 44.4
Os08g0114100 Oryza sativa ssp. japonica HOM05D001695 ORTHO05D002735 7.0e-40 168.3 233 49.4
SEGI_06911 Sequoiadendron giganteum HOM05D001695 ORTHO05D002735 3.0e-38 162.9 266 41.4
Zm00001eb260820 Zea mays HOM05D001695 ORTHO05D002735 8.6e-38 161.4 226 46.0
unitig_27.g25209 Utricularia gibba HOM05D001695 ORTHO05D002735 6.2e-36 155.2 248 41.1
SGA_v2.0_scaffold267G46183 Striga asiatica HOM05D001695 ORTHO05D002735 2.3e-35 153.3 274 43.1
Pp3c26_11090 Physcomitrium patens HOM05D001695 ORTHO05D002735 2.6e-34 149.8 236 40.7
Duzib205G0936 Durio zibethinus HOM05D001695 ORTHO05D002735 2.2e-33 146.7 241 45.6
MELO3C013771.2 Cucumis melo HOM05D001695 ORTHO05D002735 1.6e-31 140.6 139 56.8
Cc08_g16830 Coffea canephora HOM05D001695 ORTHO05D002735 3.5e-31 139.4 201 47.3
Dinv18744 Davidia involucrata HOM05D001695 ORTHO05D002735 5.1e-30 135.6 142 59.9
CSS0006818 Camellia sinensis var. sinensis HOM05D001695 ORTHO05D002735 1.9e-29 133.7 146 57.5
AagrBONN_evm.TU.Sc2ySwM_344.2007 Anthoceros agrestis HOM05D001695 ORTHO05D002735 3.3e-29 132.9 264 36.0
EL10Ac1g01649 Beta vulgaris HOM05D001695 ORTHO05D002735 1.4e-27 127.5 146 54.1
EL10Ac6g14898 Beta vulgaris HOM05D001695 ORTHO05D002735 1.4e-27 127.5 146 54.1
Mapoly0052s0029 Marchantia polymorpha HOM05D001695 ORTHO05D002735 5.2e-27 125.6 234 36.3
EL10Ac6g13092 Beta vulgaris HOM05D000255 ORTHO05D002735 2.0e-26 123.6 146 53.4
EL10Ac4g08987 Beta vulgaris HOM05D001695 ORTHO05D002735 3.4e-26 122.9 102 63.7
MBI12_g48067_MAGBIO Magnolia biondii HOM05D001695 ORTHO05D002735 9.9e-26 121.3 126 56.3
BcaB07g34121 Brassica carinata HOM05D001695 ORTHO05D002735 3.7e-25 119.4 179 45.3
MBI12_g44350_MAGBIO Magnolia biondii HOM05D001695 ORTHO05D002735 6.4e-25 118.6 126 54.8
EL10Ac2g04141 Beta vulgaris HOM05D001695 ORTHO05D002735 8.3e-25 118.2 109 59.6
SMO145G0294 Selaginella moellendorffii HOM05D001695 ORTHO05D002735 7.8e-23 111.7 217 36.4
SMO145G0173 Selaginella moellendorffii HOM05D001695 ORTHO05D002735 5.1e-22 109.0 230 33.9
CBR_g8844 Chara braunii HOM05D000019 ORTHO05D000048 2.5e-21 106.7 220 36.8
GSVIVG01019663001 Vitis vinifera HOM05D001695 ORTHO05D002735 8.1e-20 101.7 157 43.9
HPP92_020659 Vanilla planifolia HOM05D001695 ORTHO05D002735 8.9e-19 98.2 267 31.8
MD06G1120600 Malus domestica HOM05D000002 ORTHO05D000001 6.0e-15 85.5 100 50.0
TWI15G1003 Tripterygium wilfordii HOM05D001695 ORTHO05D002735 8.7e-14 81.6 80 58.8
Pp3c9_19810 Physcomitrium patens HOM05D001695 ORTHO05D002735 1.5e-13 80.9 278 25.5
Zm00001eb422930 Zea mays HOM05D001695 ORTHO05D002735 2.8e-12 76.6 46 71.7
Nn5g29481 Nelumbo nucifera HOM05D001695 ORTHO05D002735 1.8e-11 73.9 69 59.4
AagrBONN_evm.TU.Sc2ySwM_228.2831 Anthoceros agrestis HOM05D001695 ORTHO05D002735 1.2e-10 71.2 230 26.1
CBR_g8843 Chara braunii HOM05D006367 ORTHO05D007942 4.4e-10 69.3 100 44.0
Zm00001eb381060 Zea mays HOM05D001695 ORTHO05D002735 4.4e-10 69.3 44 63.6
Cre16.g661150 Chlamydomonas reinhardtii HOM05D001695 ORTHO05D002735 2.9e-09 66.6 237 26.6
Migut.O00808 Erythranthe guttata HOM05D001695 ORTHO05D002735 2.4e-08 63.5 43 60.5
SMO364G0442 Selaginella moellendorffii HOM05D001695 ORTHO05D002735 4.2e-08 62.8 160 30.6
Nn2g13290 Nelumbo nucifera HOM05D001695 ORTHO05D002735 4.6e-07 59.3 64 50.0
Pp3c4_23850 Physcomitrium patens HOM05D001695 ORTHO05D002735 6.0e-07 58.9 46 56.5
Pp3c4_23900 Physcomitrium patens HOM05D001695 ORTHO05D002735 6.0e-07 58.9 46 56.5
Actinidia22746 Actinidia chinensis HOM05D000120 ORTHO05D002735 7.9e-07 58.5 34 76.5
SEGI_27446 Sequoiadendron giganteum HOM05D001695 ORTHO05D019365 7.9e-07 58.5 32 71.9
Zm00001eb202380 Zea mays HOM05D002079 ORTHO05D014284 1.7e-06 57.4 42 57.1
Actinidia09097 Actinidia chinensis HOM05D001695 ORTHO05D002735 6.6e-06 55.5 42 52.4
PSO461G0037 Papaver somniferum HOM05D001695 ORTHO05D002735 8.7e-06 55.1 42 52.4


User provided reference genes

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