Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.HJC4WF Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 2873.6 1451 100.0
arahy.Tifrunner.gnm1.ann1.DDNH16 Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 2768.0 1520 93.1
Glyma.18G071500 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 2596.6 1439 89.9
Lj6g0015552 Lotus japonicus HOM05D004535 ORTHO05D005341 0.0e+00 2570.4 1439 88.1
Glyma.08G336400 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 2568.1 1441 89.1
Psat5g164120 Pisum sativum HOM05D004535 ORTHO05D005341 0.0e+00 2558.5 1440 88.4
Medtr3g461520 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 2550.0 1443 87.6
Lalb_Chr18g0050431 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 2538.8 1440 87.8
Phvul.006G061700 Phaseolus vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 2535.4 1440 87.7
Lalb_Chr20g0115261 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 2526.1 1440 87.0
TPR.G14720 Trifolium pratense HOM05D004535 ORTHO05D005341 0.0e+00 2486.1 1440 85.9
VMungo0540G2510 Vigna mungo HOM05D004535 ORTHO05D005341 0.0e+00 2425.6 1386 87.6
Ca_14867_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 0.0e+00 2411.7 1363 88.4
Medtr3g461500 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 2317.3 1442 81.0
Prupe.6G032900 Prunus persica HOM05D004535 ORTHO05D005341 0.0e+00 2246.9 1446 77.1
GSVIVG01014769001 Vitis vinifera HOM05D004535 ORTHO05D005341 0.0e+00 2241.5 1443 77.6
Atru.chr2.3782 Acer truncatum HOM05D004535 ORTHO05D005341 0.0e+00 2238.0 1441 76.3
MD11G1042000 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 2233.0 1439 77.1
CANSAT11G1644 Cannabis sativa HOM05D004535 ORTHO05D005341 0.0e+00 2230.3 1444 77.1
CiPaw.11G209600 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 2225.7 1441 77.2
RcHm_v2.0_Chr5g0075021 Rosa chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2225.7 1447 76.0
Potri.001G470600 Populus trichocarpa HOM05D004535 ORTHO05D005341 0.0e+00 2220.3 1443 75.8
FvH4_3g41830 Fragaria vesca HOM05D004535 ORTHO05D005341 0.0e+00 2214.1 1447 75.7
Dinv19653 Davidia involucrata HOM05D004535 ORTHO05D005341 0.0e+00 2212.6 1442 76.1
MD03G1040600 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 2212.6 1440 76.5
FAN11G1653 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2210.3 1447 75.5
FAN16G2454 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2207.9 1447 75.5
Ciclev10007234m.g Citrus clementina HOM05D004535 ORTHO05D005341 0.0e+00 2204.9 1451 75.1
FAN25G2892 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2202.9 1447 75.4
FAN21G2952 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2197.2 1447 75.5
Manes.01G005500 Manihot esculenta HOM05D004535 ORTHO05D005341 0.0e+00 2192.9 1446 75.3
Gorai.009G454100 Gossypium raimondii HOM05D004535 ORTHO05D005341 0.0e+00 2181.4 1440 74.8
Sabra11G0138700 Salix brachista HOM05D004535 ORTHO05D005341 0.0e+00 2179.8 1497 72.7
CSS0018371 Camellia sinensis var. sinensis HOM05D004535 ORTHO05D005341 0.0e+00 2177.1 1440 75.1
Hma1.2p1_0193F.1_g084240 Hydrangea macrophylla HOM05D004535 ORTHO05D005341 0.0e+00 2176.4 1444 74.5
Thecc.07G003100 Theobroma cacao HOM05D004535 ORTHO05D005341 0.0e+00 2165.2 1389 76.8
Rhsim04G0008600 Rhododendron simsii HOM05D004535 ORTHO05D005341 0.0e+00 2164.8 1457 73.9
QL08p000781 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 2162.9 1403 77.5
Lj1C898T24 Lonicera japonica HOM05D004535 ORTHO05D005341 0.0e+00 2158.6 1439 74.4
vmacro09603 Vaccinium macrocarpon HOM05D004535 ORTHO05D005341 0.0e+00 2155.6 1443 74.2
TWI38G2299 Tripterygium wilfordii HOM05D004535 ORTHO05D005341 0.0e+00 2150.9 1445 74.3
TAR627G0331 Trochodendron aralioides HOM05D004535 ORTHO05D005341 0.0e+00 2145.9 1440 74.1
PGR083G0052 Punica granatum HOM05D004535 ORTHO05D005341 0.0e+00 2133.2 1443 73.3
Sed0018073 Sechium edule HOM05D004535 ORTHO05D005341 0.0e+00 2130.5 1440 72.9
Eucgr.F02001 Eucalyptus grandis HOM05D004535 ORTHO05D005341 0.0e+00 2125.5 1442 72.8
Gohir.D05G387450 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 2122.8 1440 73.5
ClCG10G004180 Citrullus lanatus HOM05D004535 ORTHO05D005341 0.0e+00 2119.0 1440 72.4
MELO3C014086.2 Cucumis melo HOM05D004535 ORTHO05D005341 0.0e+00 2112.0 1440 72.3
Haze_09903 Corylus avellana HOM05D004535 ORTHO05D005341 0.0e+00 2107.4 1470 74.1
Solyc07g066030.4 Solanum lycopersicum HOM05D004535 ORTHO05D005341 0.0e+00 2095.5 1442 71.6
CsaV3_3G003990 Cucumis sativus L. HOM05D004535 ORTHO05D005341 0.0e+00 2094.3 1440 71.5
Sopen07g034220 Solanum pennellii HOM05D004535 ORTHO05D005341 0.0e+00 2093.5 1442 71.6
HanXRQChr03g0079281 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 2080.4 1438 71.5
Duzib213G0320 Durio zibethinus HOM05D004535 ORTHO05D005341 0.0e+00 2072.4 1439 72.1
Cc05_g15580 Coffea canephora HOM05D004535 ORTHO05D005341 0.0e+00 2066.2 1449 70.7
ECA240G2049 Erigeron canadensis HOM05D004535 ORTHO05D005341 0.0e+00 2065.8 1439 71.5
Nitab4.5_0001303g0050 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 2065.8 1442 71.1
Sc20g0000040 Simmondsia chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2060.4 1439 70.0
THA.LOC104822705 Tarenaya hassleriana HOM05D004535 ORTHO05D005341 0.0e+00 2059.6 1445 70.7
AL3G25150 Arabidopsis lyrata HOM05D004535 ORTHO05D005341 0.0e+00 2052.3 1444 70.2
AUR62017172 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 2051.2 1439 69.7
AUR62035634 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 2048.9 1439 69.8
Aqoxy4G02281 Aquilegia oxysepala HOM05D004535 ORTHO05D005341 0.0e+00 2048.1 1447 69.5
Thhalv10019881m.g Eutrema salsugineum HOM05D004535 ORTHO05D005341 0.0e+00 2047.7 1446 70.5
EL10Ac4g07499 Beta vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 2047.3 1442 70.0
PSO210G5731 Papaver somniferum HOM05D004535 ORTHO05D005341 0.0e+00 2047.3 1441 69.9
Aa31LG8G550 Aethionema arabicum HOM05D004535 ORTHO05D005341 0.0e+00 2044.6 1439 70.2
BolC3t16899H Brassica oleracea HOM05D004535 ORTHO05D005341 0.0e+00 2043.5 1444 69.7
BraA03t12967Z Brassica rapa HOM05D004535 ORTHO05D005341 0.0e+00 2041.2 1444 69.7
BcaB04g18753 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 2040.4 1444 69.8
Carub.0003s1271 Capsella rubella HOM05D004535 ORTHO05D005341 0.0e+00 2039.2 1444 69.8
A03p38140 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 2038.5 1444 69.7
AT3G13330 Arabidopsis thaliana HOM05D004535 ORTHO05D005341 0.0e+00 2038.1 1444 69.9
SalBow8G3417 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 2034.6 1467 69.7
C03p46300 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 2033.8 1444 69.5
BcaC01g03999 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 2030.4 1444 69.4
Migut.M01591 Erythranthe guttata HOM05D004535 ORTHO05D005341 0.0e+00 2029.6 1440 69.1
CARHR087940 Cardamine hirsuta HOM05D004535 ORTHO05D005341 0.0e+00 2021.9 1445 69.1
Lsat_1_v5_gn_9_89621 Lactuca sativa HOM05D004535 ORTHO05D005341 0.0e+00 2018.0 1439 70.5
Sp3g11530 Schrenkiella parvula HOM05D004535 ORTHO05D005341 0.0e+00 2013.0 1445 68.7
MSTRG.15824 Avicennia marina HOM05D004535 ORTHO05D005341 0.0e+00 2002.3 1440 68.3
Oeu013013.2 Olea europaea HOM05D004535 ORTHO05D005341 0.0e+00 1993.8 1494 67.1
Peaxi162Scf00232g00530 Petunia axillaris HOM05D004535 ORTHO05D005341 0.0e+00 1983.0 1438 69.1
HanXRQChr13g0409231 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 1976.4 1445 68.9
Gohir.A04G001901 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 1974.9 1298 75.4
DCAR_013765 Daucus carota HOM05D004535 ORTHO05D005341 0.0e+00 1967.2 1438 68.4
Hund22978 Selenicereus undatus HOM05D004535 ORTHO05D005341 0.0e+00 1961.4 1438 68.6
MBI15_g37116_MAGBIO Magnolia biondii HOM05D004535 ORTHO05D005341 0.0e+00 1953.7 1420 69.2
QL08p000755 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 1940.2 1572 63.7
Ah.06g180940 Amaranthus hybridus HOM05D004535 ORTHO05D005341 0.0e+00 1937.9 1444 66.4
SalBow8G2487 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 1916.4 1440 66.8
Haze_09904 Corylus avellana HOM05D004535 ORTHO05D005341 0.0e+00 1884.8 1529 63.6
CiPaw.12G142100 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 1876.7 1442 66.2
ATR0751G071 Amborella trichopoda HOM05D004535 ORTHO05D005341 0.0e+00 1847.8 1441 63.7
Nn1g08312 Nelumbo nucifera HOM05D004535 ORTHO05D005341 0.0e+00 1841.6 1249 73.9
Nitab4.5_0000152g0130 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 1817.4 1274 71.4
Cpa.g.sc12.80 Carica papaya HOM05D004535 ORTHO05D005341 0.0e+00 1797.3 1299 70.2
HPP92_018915 Vanilla planifolia HOM05D004535 ORTHO05D005341 0.0e+00 1785.4 1447 61.5
Actinidia03667 Actinidia chinensis HOM05D004535 ORTHO05D005341 0.0e+00 1776.9 1187 76.0
Potri.011G167700 Populus trichocarpa HOM05D004535 ORTHO05D005341 0.0e+00 1744.9 1149 74.2
Zm00001eb281130 Zea mays HOM05D004535 ORTHO05D005341 0.0e+00 1718.4 1443 59.7
MD00G1206400 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 1432.9 937 76.9
PGSC0003DMG401022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 0.0e+00 1397.5 945 72.2
CDE05G3236 Ceratophyllum demersum HOM05D004535 ORTHO05D005341 0.0e+00 1349.3 1073 63.1
unitig_699.g19598 Utricularia gibba HOM05D004535 ORTHO05D005341 0.0e+00 1260.7 1440 48.7
Ca_14861_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 0.0e+00 1226.8 721 85.0
Pp3c20_11540 Physcomitrium patens HOM05D004535 ORTHO05D005341 0.0e+00 1111.3 1460 41.0
Mapoly0071s0029 Marchantia polymorpha HOM05D004535 ORTHO05D005341 0.0e+00 1102.0 1472 41.5
AagrBONN_evm.TU.Sc2ySwM_228.5886 Anthoceros agrestis HOM05D004535 ORTHO05D005341 0.0e+00 1094.0 1474 42.1
Mapoly0069s0005 Marchantia polymorpha HOM05D004535 ORTHO05D005341 2.0e-302 1043.1 1476 39.8
CAN.G623.64 Capsicum annuum HOM05D004535 ORTHO05D005341 2.9e-301 1039.3 946 59.8
Pp3c15_5520 Physcomitrium patens HOM05D004535 ORTHO05D005341 3.3e-281 972.6 1464 38.9
SMO184G0002 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 1.2e-254 884.4 1480 35.9
SMO340G0109 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 1.5e-249 867.5 1456 35.6
Os06g0301300 Oryza sativa ssp. japonica HOM05D004535 ORTHO05D005341 5.7e-249 865.5 691 61.4
COL.COLO4_07778 Corchorus olitorius HOM05D004535 ORTHO05D005341 4.8e-248 862.4 1132 46.9
CBR_g24134 Chara braunii HOM05D004535 ORTHO05D005341 3.6e-235 819.7 1560 33.6
SMO239G0001 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 1.8e-234 817.4 1445 34.7
CAN.G623.63 Capsicum annuum HOM05D004535 ORTHO05D005341 4.9e-192 676.4 493 69.2
VMungo0540G1109 Vigna mungo HOM05D004535 ORTHO05D005341 6.0e-142 510.0 320 78.4
SEGI_13123 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 1.5e-137 495.4 456 53.1
QL10p044954 Quercus lobata HOM05D004535 ORTHO05D005341 3.4e-137 494.2 635 48.3
arahy.Tifrunner.gnm1.ann1.P6R29M Arachis hypogaea HOM05D004535 ORTHO05D005341 9.4e-111 406.4 341 66.9
VMungo1127G2045 Vigna mungo HOM05D004535 ORTHO05D005341 7.4e-108 396.7 237 84.4
MD00G1206500 Malus domestica HOM05D004535 ORTHO05D005341 1.2e-100 372.9 248 79.0
SEGI_38328 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 2.2e-99 368.6 448 46.7
Actinidia00827 Actinidia chinensis HOM05D004535 ORTHO05D005341 2.4e-98 365.2 303 60.1
MD00G1206600 Malus domestica HOM05D004535 ORTHO05D005341 4.1e-98 364.4 220 72.7
MCO11G531 Micromonas commoda HOM05D004535 ORTHO05D005341 4.7e-94 350.9 1466 24.6
SEGI_32129 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 7.8e-81 307.0 360 52.2
Actinidia03668 Actinidia chinensis HOM05D004535 ORTHO05D005341 3.9e-72 278.1 225 57.8
Nn1g08306 Nelumbo nucifera HOM05D004535 ORTHO05D005341 4.9e-67 261.2 167 69.5
PRCOL_00006556 Prasinoderma coloniale HOM05D004535 ORTHO05D005341 1.9e-58 232.6 1270 23.3
Potri.011G167650 Populus trichocarpa HOM05D004535 ORTHO05D005341 1.0e-48 200.3 128 73.4
arahy.Tifrunner.gnm1.ann1.QBA8JR Arachis hypogaea HOM05D004535 ORTHO05D005341 7.6e-44 184.1 163 63.8
arahy.Tifrunner.gnm1.ann1.6S2B7N Arachis hypogaea HOM05D012221 ORTHO05D005341 4.9e-43 181.4 172 63.4
arahy.Tifrunner.gnm1.ann1.A7P7U5 Arachis hypogaea HOM05D004535 ORTHO05D005341 1.9e-39 169.5 93 95.7
arahy.Tifrunner.gnm1.ann1.EHT35G Arachis hypogaea HOM05D004535 ORTHO05D005341 1.6e-38 166.4 162 62.3
Actinidia00829 Actinidia chinensis HOM05D004535 ORTHO05D005341 6.4e-35 154.5 140 62.1
Actinidia00828 Actinidia chinensis HOM05D004535 ORTHO05D005341 2.3e-32 146.0 212 42.5
arahy.Tifrunner.gnm1.ann1.HQ6FCP Arachis hypogaea HOM05D004535 ORTHO05D005341 1.2e-28 133.7 172 50.6
Cre14.g628702 Chlamydomonas reinhardtii HOM05D004535 ORTHO05D005341 2.0e-28 132.9 656 24.2
Cfa027001 Carpinus fangiana HOM05D004535 ORTHO05D005341 1.3e-24 120.2 1072 21.0
PSO541G1144 Papaver somniferum HOM05D004535 ORTHO05D005341 6.7e-24 117.9 74 71.6
Psat5g106440 Pisum sativum HOM05D004535 ORTHO05D005341 3.3e-23 115.5 65 89.2
VMungo1215G1327 Vigna mungo HOM05D004535 ORTHO05D005341 1.6e-22 113.2 73 80.8
Lsat_1_v5_gn_0_5420 Lactuca sativa HOM05D004535 ORTHO05D005341 1.0e-19 104.0 76 63.2
VMungo0110G0001 Vigna mungo HOM05D004535 ORTHO05D005341 6.1e-17 94.7 67 61.2
Psat4g112520 Pisum sativum HOM05D004535 ORTHO05D005341 1.1e-13 84.0 71 69.0
arahy.Tifrunner.gnm1.ann1.L5L68D Arachis hypogaea HOM05D001579 ORTHO05D005341 2.2e-11 76.3 34 100.0
arahy.Tifrunner.gnm1.ann1.TGLR9V Arachis hypogaea HOM05D004535 ORTHO05D005341 1.9e-10 73.2 163 36.2
arahy.Tifrunner.gnm1.ann1.39Z329 Arachis hypogaea HOM05D002272 ORTHO05D005405 1.2e-09 70.5 36 97.2
VMungo0720G2789 Vigna mungo HOM05D003238 ORTHO05D003571 1.4e-08 67.0 58 65.5


User provided reference genes

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