Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.HID3FF Arachis hypogaea HOM05D006624 ORTHO05D008209 3.4e-55 218.0 105 100.0
arahy.Tifrunner.gnm1.ann1.PE2WYP Arachis hypogaea HOM05D006624 ORTHO05D008209 2.8e-49 198.4 132 77.3
arahy.Tifrunner.gnm1.ann1.76B0S0 Arachis hypogaea HOM05D006624 ORTHO05D008209 3.0e-43 178.3 123 75.6
arahy.Tifrunner.gnm1.ann1.A7V6P3 Arachis hypogaea HOM05D006624 ORTHO05D008209 3.0e-43 178.3 123 75.6
Medtr5g014010 Medicago truncatula HOM05D006624 ORTHO05D008209 4.7e-20 101.3 116 49.1
Phvul.002G004700 Phaseolus vulgaris HOM05D006624 ORTHO05D008209 2.3e-19 99.0 104 49.0
VMungo1215G2954 Vigna mungo HOM05D006624 ORTHO05D008209 3.0e-19 98.6 104 49.0
Glyma.11G041200 Glycine max HOM05D006624 ORTHO05D008209 8.8e-19 97.1 108 46.3
TPR.G21431 Trifolium pratense HOM05D006624 ORTHO05D008209 8.8e-19 97.1 126 45.2
Glyma.01G200900 Glycine max HOM05D006624 ORTHO05D008209 1.2e-18 96.7 107 46.7
Psat2g174640 Pisum sativum HOM05D006624 ORTHO05D008209 4.4e-18 94.7 101 48.5
Lj2g0021367 Lotus japonicus HOM05D006624 ORTHO05D008209 1.1e-16 90.1 117 42.7
CiPaw.11G087800 Carya illinoinensis HOM05D006624 ORTHO05D008209 1.6e-15 86.3 110 41.8
RcHm_v2.0_Chr7g0208351 Rosa chinensis HOM05D006624 ORTHO05D008209 2.7e-15 85.5 109 41.3
QL12p007029 Quercus lobata HOM05D006624 ORTHO05D008209 4.5e-15 84.7 123 39.0
QL12p007008 Quercus lobata HOM05D006624 ORTHO05D008209 1.0e-14 83.6 123 39.0
QL12p007057 Quercus lobata HOM05D006624 ORTHO05D008209 1.0e-14 83.6 123 39.0
Thecc.03G233800 Theobroma cacao HOM05D006624 ORTHO05D008209 3.8e-14 81.6 112 42.0
Gorai.003G180000 Gossypium raimondii HOM05D006624 ORTHO05D008209 5.0e-14 81.3 118 37.3
Lalb_Chr16g0379211 Lupinus albus HOM05D006624 ORTHO05D008209 1.9e-13 79.3 101 41.6
AUR62007233 Chenopodium quinoa HOM05D006624 ORTHO05D008209 2.5e-13 79.0 116 38.8
AUR62018767 Chenopodium quinoa HOM05D006624 ORTHO05D008209 2.5e-13 79.0 116 38.8
Gohir.A03G002600 Gossypium hirsutum HOM05D006624 ORTHO05D008209 2.5e-13 79.0 100 40.0
MD06G1040000 Malus domestica HOM05D006624 ORTHO05D008209 2.5e-13 79.0 111 37.8
Haze_08295 Corylus avellana HOM05D006624 ORTHO05D008209 3.2e-13 78.6 102 39.2
FAN04G0639 Fragaria x ananassa HOM05D006624 ORTHO05D008209 4.2e-13 78.2 107 42.1
GSVIVG01013232001 Vitis vinifera HOM05D006624 ORTHO05D008209 4.2e-13 78.2 109 38.5
Atru.chr6.1770 Acer truncatum HOM05D006624 ORTHO05D008209 5.5e-13 77.8 108 38.0
COL.COLO4_17108 Corchorus olitorius HOM05D000087 ORTHO05D008209 5.5e-13 77.8 100 42.0
THA.LOC104827742 Tarenaya hassleriana HOM05D006624 ORTHO05D008209 5.5e-13 77.8 114 39.5
Potri.001G146500 Populus trichocarpa HOM05D006624 ORTHO05D008209 9.5e-13 77.0 117 36.8
Actinidia10881 Actinidia chinensis HOM05D006624 ORTHO05D008209 1.2e-12 76.6 107 42.1
Ah.07g200030 Amaranthus hybridus HOM05D006624 ORTHO05D008209 1.2e-12 76.6 102 40.2
EL10Ac5g12192 Beta vulgaris HOM05D006624 ORTHO05D008209 1.2e-12 76.6 101 40.6
Dinv25186 Davidia involucrata HOM05D006624 ORTHO05D008209 1.2e-12 76.6 111 39.6
Sabra01G0115200 Salix brachista HOM05D006624 ORTHO05D008209 1.2e-12 76.6 112 37.5
Duzib068G0530 Durio zibethinus HOM05D006624 ORTHO05D008209 1.6e-12 76.3 100 40.0
Eucgr.E00310 Eucalyptus grandis HOM05D006624 ORTHO05D008209 2.1e-12 75.9 116 37.9
Hma1.2p1_0414F.1_g147760 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 2.1e-12 75.9 117 41.9
Thhalv10000965m.g Eutrema salsugineum HOM05D006624 ORTHO05D008209 3.6e-12 75.1 110 40.0
ClCG09G012360 Citrullus lanatus HOM05D006624 ORTHO05D008209 6.1e-12 74.3 111 39.6
Manes.17G019300 Manihot esculenta HOM05D006624 ORTHO05D008209 6.1e-12 74.3 116 38.8
MELO3C003374.2 Cucumis melo HOM05D006624 ORTHO05D008209 8.0e-12 73.9 111 37.8
TWI15G0738 Tripterygium wilfordii HOM05D006624 ORTHO05D008209 8.0e-12 73.9 101 39.6
Aa31LG9G6360 Aethionema arabicum HOM05D006624 ORTHO05D008209 1.0e-11 73.6 115 38.3
FAN08G0242 Fragaria x ananassa HOM05D006624 ORTHO05D008209 1.0e-11 73.6 102 41.2
Ciclev10031769m.g Citrus clementina HOM05D006624 ORTHO05D008209 1.4e-11 73.2 101 40.6
Hund14427 Selenicereus undatus HOM05D006624 ORTHO05D008209 1.4e-11 73.2 100 38.0
AT5G46560 Arabidopsis thaliana HOM05D006624 ORTHO05D008209 1.8e-11 72.8 119 38.7
CsaV3_3G049520 Cucumis sativus L. HOM05D006624 ORTHO05D008209 3.0e-11 72.0 111 38.7
Peaxi162Scf00084g00918 Petunia axillaris HOM05D006624 ORTHO05D008209 4.0e-11 71.6 120 37.5
Sed0020690 Sechium edule HOM05D006624 ORTHO05D008209 4.0e-11 71.6 110 34.5
CSS0000809 Camellia sinensis var. sinensis HOM05D006624 ORTHO05D008209 5.2e-11 71.2 109 41.3
CSS0049781 Camellia sinensis var. sinensis HOM05D006624 ORTHO05D008209 5.2e-11 71.2 109 41.3
FvH4_5g21210 Fragaria vesca HOM05D006624 ORTHO05D008209 5.2e-11 71.2 106 40.6
Lsat_1_v5_gn_6_68241 Lactuca sativa HOM05D006624 ORTHO05D008209 5.2e-11 71.2 123 37.4
AL8G11790 Arabidopsis lyrata HOM05D006624 ORTHO05D008209 1.2e-10 70.1 120 38.3
FAN18G2886 Fragaria x ananassa HOM05D006624 ORTHO05D008209 1.2e-10 70.1 107 40.2
Actinidia31470 Actinidia chinensis HOM05D006624 ORTHO05D008209 2.0e-10 69.3 110 37.3
Prupe.5G046100 Prunus persica HOM05D006624 ORTHO05D008209 2.6e-10 68.9 118 31.4
TAR629G2579 Trochodendron aralioides HOM05D006624 ORTHO05D008209 3.4e-10 68.6 119 36.1
Aqoxy7G00644 Aquilegia oxysepala HOM05D006624 ORTHO05D008209 4.4e-10 68.2 112 34.8
DCAR_031785 Daucus carota HOM05D006624 ORTHO05D008209 4.4e-10 68.2 110 40.0
PGR042G3682 Punica granatum HOM05D006624 ORTHO05D008209 4.4e-10 68.2 112 35.7
MSTRG.12153 Avicennia marina HOM05D006624 ORTHO05D008209 5.7e-10 67.8 119 34.5
CARHR175020 Cardamine hirsuta HOM05D006624 ORTHO05D008209 7.5e-10 67.4 111 36.9
Carub.0008s0136 Capsella rubella HOM05D006624 ORTHO05D008209 1.7e-09 66.2 101 37.6
Rhsim07G0122500 Rhododendron simsii HOM05D006624 ORTHO05D008209 3.7e-09 65.1 95 40.0
Gorai.001G276000 Gossypium raimondii HOM05D006624 ORTHO05D008209 6.3e-09 64.3 88 42.0
HanXRQChr08g0227961 Helianthus annuus HOM05D006624 ORTHO05D008209 6.3e-09 64.3 119 35.3
vmacro14109 Vaccinium macrocarpon HOM05D006624 ORTHO05D008209 6.3e-09 64.3 115 34.8
Migut.N01377 Erythranthe guttata HOM05D006624 ORTHO05D008209 1.1e-08 63.5 115 34.8
Nitab4.5_0002055g0180 Nicotiana tabacum HOM05D006624 ORTHO05D008209 1.4e-08 63.2 109 35.8
Os03g0100050 Oryza sativa ssp. japonica HOM05D006624 ORTHO05D008209 1.4e-08 63.2 110 33.6
SpUn0632_0010 Schrenkiella parvula HOM05D006624 ORTHO05D008209 1.4e-08 63.2 41 61.0
PSO565G0001 Papaver somniferum HOM05D006624 ORTHO05D008209 1.8e-08 62.8 124 33.1
PGSC0003DMG400024215 Solanum tuberosum HOM05D006624 ORTHO05D008209 2.4e-08 62.4 114 34.2
CDE04G3153 Ceratophyllum demersum HOM05D006624 ORTHO05D008209 3.1e-08 62.0 118 33.1
Gohir.D03G169701 Gossypium hirsutum HOM05D006624 ORTHO05D008209 3.1e-08 62.0 40 57.5
Sopen08g025830 Solanum pennellii HOM05D006624 ORTHO05D008209 3.1e-08 62.0 111 35.1
ATR1101G009 Amborella trichopoda HOM05D006624 ORTHO05D008209 4.1e-08 61.6 93 38.7
Hma1.2p1_3049F.1_g332130 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 4.1e-08 61.6 40 62.5
Sc01g0007740 Simmondsia chinensis HOM05D006624 ORTHO05D008209 5.4e-08 61.2 111 33.3
Nitab4.5_0004327g0020 Nicotiana tabacum HOM05D006624 ORTHO05D008209 9.2e-08 60.5 109 34.9
SalBow6G4456 Salvia bowleyana HOM05D006624 ORTHO05D008209 9.2e-08 60.5 118 34.7
Solyc08g077250.4 Solanum lycopersicum HOM05D006624 ORTHO05D008209 9.2e-08 60.5 111 35.1
CAN.G799.14 Capsicum annuum HOM05D006624 ORTHO05D008209 7.7e-07 57.4 107 33.6
SEGI_35168 Sequoiadendron giganteum HOM05D006624 ORTHO05D008209 1.0e-06 57.0 94 35.1
Cc08_g02070 Coffea canephora HOM05D006624 ORTHO05D008209 1.7e-06 56.2 127 32.3
ECA233G2124 Erigeron canadensis HOM05D006624 ORTHO05D008209 2.3e-06 55.8 113 35.4


User provided reference genes

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