Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.HHGT95 Arachis hypogaea HOM05D004281 ORTHO05D004839 1.2e-132 476.5 241 100.0
arahy.Tifrunner.gnm1.ann1.MYV34H Arachis hypogaea HOM05D004281 ORTHO05D004839 2.0e-122 442.6 241 95.4
Lj4g0008259 Lotus japonicus HOM05D004281 ORTHO05D004839 9.8e-98 360.5 241 78.4
Lalb_Chr13g0292401 Lupinus albus HOM05D004281 ORTHO05D004839 1.9e-96 356.3 241 76.3
Psat7g088840 Pisum sativum HOM05D004281 ORTHO05D004839 1.7e-94 349.7 241 75.5
Lalb_Chr12g0209091 Lupinus albus HOM05D004281 ORTHO05D004839 2.3e-94 349.4 241 74.7
Glyma.08G087500 Glycine max HOM05D004281 ORTHO05D004839 1.6e-92 343.2 241 77.6
Medtr4g094700 Medicago truncatula HOM05D004281 ORTHO05D004839 1.6e-92 343.2 241 74.3
Psat5g058760 Pisum sativum HOM05D004281 ORTHO05D004839 4.0e-91 338.6 241 73.0
Phvul.002G189800 Phaseolus vulgaris HOM05D004281 ORTHO05D004839 2.2e-89 332.8 241 75.1
Ca_18245_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 3.5e-87 325.5 230 75.2
VMungo0251G0005 Vigna mungo HOM05D004281 ORTHO05D004839 1.3e-86 323.6 229 75.1
CiPaw.01G202700 Carya illinoinensis HOM05D004281 ORTHO05D004839 1.7e-86 323.2 243 70.8
TPR.G31246 Trifolium pratense HOM05D004281 ORTHO05D004839 2.3e-83 312.8 260 67.7
Potri.017G001800 Populus trichocarpa HOM05D004281 ORTHO05D004839 4.9e-81 305.1 221 73.8
TAR365G0664 Trochodendron aralioides HOM05D004281 ORTHO05D004839 1.4e-80 303.5 240 68.3
Atru.chr8.1217 Acer truncatum HOM05D004281 ORTHO05D004839 7.1e-80 301.2 204 77.9
Gohir.D11G011300 Gossypium hirsutum HOM05D004281 ORTHO05D004839 7.1e-80 301.2 219 74.0
Gorai.007G012700 Gossypium raimondii HOM05D004281 ORTHO05D004839 7.1e-80 301.2 219 74.0
Gohir.A04G135700 Gossypium hirsutum HOM05D004281 ORTHO05D004839 3.5e-79 298.9 201 78.6
Gohir.A11G012100 Gossypium hirsutum HOM05D004281 ORTHO05D004839 7.8e-79 297.7 201 78.1
THA.LOC104804375 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 1.0e-78 297.4 219 72.1
Ciclev10022149m.g Citrus clementina HOM05D004281 ORTHO05D004839 1.7e-78 296.6 202 77.2
Gohir.D04G178800 Gossypium hirsutum HOM05D004281 ORTHO05D004839 3.0e-78 295.8 200 78.5
Gorai.012G171900 Gossypium raimondii HOM05D004281 ORTHO05D004839 3.0e-78 295.8 200 78.5
Dinv24743 Davidia involucrata HOM05D004281 ORTHO05D004839 8.6e-78 294.3 201 77.6
Potri.007G146000 Populus trichocarpa HOM05D004281 ORTHO05D004839 8.6e-78 294.3 173 86.7
Atru.chr3.1980 Acer truncatum HOM05D004281 ORTHO05D004839 1.1e-77 293.9 203 76.8
Nn1g09410 Nelumbo nucifera HOM05D004281 ORTHO05D004839 1.1e-77 293.9 204 76.5
Carub.0004s2660 Capsella rubella HOM05D004281 ORTHO05D004839 1.5e-77 293.5 231 67.5
CANSAT78G2301 Cannabis sativa HOM05D004281 ORTHO05D004839 2.5e-77 292.7 164 89.0
Aa31LG1G25720 Aethionema arabicum HOM05D004281 ORTHO05D004839 3.3e-77 292.4 210 73.3
COL.COLO4_27572 Corchorus olitorius HOM05D004281 ORTHO05D004839 3.3e-77 292.4 195 77.4
THA.LOC104802349 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 5.6e-77 291.6 219 71.2
Thhalv10001807m.g Eutrema salsugineum HOM05D004281 ORTHO05D004839 1.2e-76 290.4 231 68.0
Sp4g26130 Schrenkiella parvula HOM05D004281 ORTHO05D004839 1.6e-76 290.0 230 66.5
AT2G44050 Arabidopsis thaliana HOM05D004281 ORTHO05D004839 2.8e-76 289.3 234 67.1
Eucgr.F02801 Eucalyptus grandis HOM05D004281 ORTHO05D004839 2.8e-76 289.3 196 75.5
QL10p065802 Quercus lobata HOM05D004281 ORTHO05D004839 3.6e-76 288.9 239 64.0
Eucgr.L01202 Eucalyptus grandis HOM05D004281 ORTHO05D004839 8.1e-76 287.7 196 75.5
GSVIVG01038261001 Vitis vinifera HOM05D004281 ORTHO05D004839 8.1e-76 287.7 171 84.8
Prupe.7G270800 Prunus persica HOM05D004281 ORTHO05D004839 1.4e-75 287.0 240 66.7
Aa31LG10G14140 Aethionema arabicum HOM05D004281 ORTHO05D004839 1.8e-75 286.6 241 64.3
AL4G42920 Arabidopsis lyrata HOM05D004281 ORTHO05D004839 4.0e-75 285.4 234 65.8
FAN15G1026 Fragaria x ananassa HOM05D004281 ORTHO05D004839 6.8e-75 284.6 184 79.3
Manes.02G102600 Manihot esculenta HOM05D004281 ORTHO05D004839 6.8e-75 284.6 170 81.8
MD15G1142400 Malus domestica HOM05D004281 ORTHO05D004839 8.9e-75 284.3 210 69.5
TWI15G0067 Tripterygium wilfordii HOM05D004281 ORTHO05D004839 1.2e-74 283.9 205 71.2
MSTRG.24546 Avicennia marina HOM05D004281 ORTHO05D004839 1.5e-74 283.5 165 85.5
RcHm_v2.0_Chr2g0084411 Rosa chinensis HOM05D004281 ORTHO05D004839 3.4e-74 282.3 169 85.2
ECA233G0955 Erigeron canadensis HOM05D004281 ORTHO05D004839 4.4e-74 282.0 222 68.0
FvH4_2g10600 Fragaria vesca HOM05D004281 ORTHO05D004839 4.4e-74 282.0 184 78.8
FAN24G2282 Fragaria x ananassa HOM05D004281 ORTHO05D004839 4.4e-74 282.0 184 78.8
Sabra17G0005800 Salix brachista HOM05D004281 ORTHO05D004839 9.9e-74 280.8 215 69.8
vmacro00726 Vaccinium macrocarpon HOM05D004281 ORTHO05D004839 2.2e-73 279.6 185 76.8
BcaB06g29512 Brassica carinata HOM05D004281 ORTHO05D004839 3.8e-73 278.9 224 65.6
CSS0036502 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 3.8e-73 278.9 165 84.8
CARHR139210 Cardamine hirsuta HOM05D004281 ORTHO05D004839 3.8e-73 278.9 220 64.1
Thecc.05G001000 Theobroma cacao HOM05D004281 ORTHO05D004839 3.8e-73 278.9 201 74.6
Actinidia18388 Actinidia chinensis HOM05D004281 ORTHO05D004839 4.9e-73 278.5 164 85.4
BcaC02g07139 Brassica carinata HOM05D004281 ORTHO05D004839 4.9e-73 278.5 222 66.2
FvH4_1g00110 Fragaria vesca HOM05D004281 ORTHO05D004839 4.9e-73 278.5 191 76.4
PGR142G2669 Punica granatum HOM05D004281 ORTHO05D004839 6.4e-73 278.1 234 66.2
Rhsim09G0002300 Rhododendron simsii HOM05D000705 ORTHO05D002970 6.4e-73 278.1 168 82.7
BolC3t15286H Brassica oleracea HOM05D004281 ORTHO05D004839 8.4e-73 277.7 195 73.8
BolC4t28587H Brassica oleracea HOM05D004281 ORTHO05D004839 8.4e-73 277.7 222 66.2
A03p24650 Brassica napus HOM05D004281 ORTHO05D004839 1.1e-72 277.3 201 71.6
BraA03t11671Z Brassica rapa HOM05D004281 ORTHO05D004839 1.1e-72 277.3 201 71.6
BcaB06g29353 Brassica carinata HOM05D004281 ORTHO05D004839 1.9e-72 276.6 162 82.7
CSS0013668 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.9e-72 276.6 161 85.7
HanXRQChr13g0392191 Helianthus annuus HOM05D004281 ORTHO05D004839 2.4e-72 276.2 165 81.2
A04p33170 Brassica napus HOM05D004281 ORTHO05D004839 3.2e-72 275.8 199 71.4
BcaB01g03334 Brassica carinata HOM05D004281 ORTHO05D004839 4.2e-72 275.4 214 68.2
BraA04t18776Z Brassica rapa HOM05D004281 ORTHO05D004839 5.4e-72 275.0 195 72.8
HanXRQChr13g0392171 Helianthus annuus HOM05D004281 ORTHO05D004839 5.4e-72 275.0 194 71.1
CDE09G0590 Ceratophyllum demersum HOM05D004281 ORTHO05D004839 1.0e-70 270.8 198 70.7
Migut.G00913 Erythranthe guttata HOM05D004281 ORTHO05D004839 1.0e-70 270.8 157 83.4
Lsat_1_v5_gn_8_33320 Lactuca sativa HOM05D004281 ORTHO05D004839 3.9e-70 268.9 174 75.3
Aqoxy7G00623 Aquilegia oxysepala HOM05D004281 ORTHO05D004839 5.1e-70 268.5 166 81.3
Haze_11113 Corylus avellana HOM05D004281 ORTHO05D004839 1.1e-69 267.3 244 61.5
Cc05_g03580 Coffea canephora HOM05D004281 ORTHO05D004839 1.5e-69 266.9 167 81.4
HPP92_005601 Vanilla planifolia HOM05D004281 ORTHO05D004839 1.5e-69 266.9 197 71.6
SGA_v2.0_scaffold37G14906 Striga asiatica HOM05D004281 ORTHO05D004839 4.3e-69 265.4 195 70.3
Cc00_g16880 Coffea canephora HOM05D004281 ORTHO05D004839 5.6e-69 265.0 158 83.5
AUR62023693 Chenopodium quinoa HOM05D004281 ORTHO05D004839 2.1e-68 263.1 172 76.2
PSO675G2617 Papaver somniferum HOM05D004281 ORTHO05D004839 2.1e-68 263.1 167 80.2
PGR142G1214 Punica granatum HOM05D004281 ORTHO05D004839 3.6e-68 262.3 173 76.3
C03p29390 Brassica napus HOM05D004281 ORTHO05D004839 4.8e-68 261.9 216 66.2
PSO732G0016 Papaver somniferum HOM05D004281 ORTHO05D004839 6.2e-68 261.5 167 80.2
CsaV3_6G032410 Cucumis sativus L. HOM05D004281 ORTHO05D004839 1.1e-67 260.8 228 62.3
Sed0015421 Sechium edule HOM05D004281 ORTHO05D004839 1.1e-67 260.8 231 60.6
Sed0022244 Sechium edule HOM05D004281 ORTHO05D004839 1.8e-67 260.0 211 64.0
EL10Ac3g06178 Beta vulgaris HOM05D004281 ORTHO05D004839 2.4e-67 259.6 172 75.0
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 3.1e-67 259.2 157 84.1
EL10Ac4g08581 Beta vulgaris HOM05D004281 ORTHO05D004839 9.0e-67 257.7 171 74.3
Nitab4.5_0000668g0110 Nicotiana tabacum HOM05D004281 ORTHO05D004839 9.0e-67 257.7 171 76.0
Sopen08g005770 Solanum pennellii HOM05D004281 ORTHO05D004839 1.5e-66 256.9 198 67.2
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 3.4e-66 255.8 212 63.7
AUR62002492 Chenopodium quinoa HOM05D004281 ORTHO05D004839 4.4e-66 255.4 257 56.8
Solyc08g015660.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 4.4e-66 255.4 203 65.5
Nitab4.5_0001110g0040 Nicotiana tabacum HOM05D004281 ORTHO05D004839 9.9e-66 254.2 171 74.9
PGSC0003DMG400025217 Solanum tuberosum HOM05D004281 ORTHO05D004839 9.9e-66 254.2 165 74.5
PGSC0003DMG400029273 Solanum tuberosum HOM05D004281 ORTHO05D004839 9.9e-66 254.2 202 65.8
FAN26G2986 Fragaria x ananassa HOM05D000705 ORTHO05D004839 1.3e-65 253.8 159 81.8
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 1.3e-65 253.8 139 88.5
CAN.G607.11 Capsicum annuum HOM05D004281 ORTHO05D004839 1.7e-65 253.4 160 76.9
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 6.4e-65 251.5 183 71.6
Peaxi162Scf00459g00125 Petunia axillaris HOM05D004281 ORTHO05D004839 8.4e-65 251.1 197 67.0
Solyc12g096590.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 1.1e-64 250.8 213 63.4
MELO3C011439.2 Cucumis melo HOM05D004281 ORTHO05D004839 1.4e-64 250.4 228 60.1
Oeu014981.1 Olea europaea HOM05D004281 ORTHO05D004839 1.4e-64 250.4 146 84.9
Sopen12g032420 Solanum pennellii HOM05D004281 ORTHO05D004839 3.2e-64 249.2 164 73.8
Cpa.g.sc9.245 Carica papaya HOM05D004281 ORTHO05D004839 4.2e-64 248.8 174 75.9
CAN.G566.44 Capsicum annuum HOM05D004281 ORTHO05D004839 2.7e-63 246.1 167 71.3
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 3.5e-63 245.7 157 75.8
Zm00001eb068110 Zea mays HOM05D004281 ORTHO05D004839 1.3e-62 243.8 197 65.0
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 8.7e-62 241.1 189 68.8
Os04g0497400 Oryza sativa ssp. japonica HOM05D004281 ORTHO05D004839 8.7e-62 241.1 170 74.7
Ah.13g073140 Amaranthus hybridus HOM05D000705 ORTHO05D004839 4.3e-61 238.8 230 56.5
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 1.3e-60 237.3 133 88.0
Zm00001eb432360 Zea mays HOM05D004281 ORTHO05D004839 4.8e-60 235.3 163 72.4
Pp3c27_2710 Physcomitrium patens HOM05D004281 ORTHO05D004839 1.1e-59 234.2 158 70.3
Pp3c16_5700 Physcomitrium patens HOM05D004281 ORTHO05D004839 4.0e-59 232.3 158 72.2
SMO198G0030 Selaginella moellendorffii HOM05D004281 ORTHO05D004839 1.5e-58 230.3 171 66.1
Nitab4.5_0001091g0070 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.6e-58 229.6 169 68.6
QL10p064677 Quercus lobata HOM05D004281 ORTHO05D004839 3.4e-58 229.2 139 81.3
TPR.G18090 Trifolium pratense HOM05D004281 ORTHO05D004839 3.4e-58 229.2 146 80.8
Mapoly0120s0006 Marchantia polymorpha HOM05D004281 ORTHO05D004839 4.5e-58 228.8 162 69.8
ClCG08G010210 Citrullus lanatus HOM05D004281 ORTHO05D004839 9.9e-58 227.6 139 77.0
Lj4A426G8 Lonicera japonica HOM05D004281 ORTHO05D004839 3.8e-57 225.7 127 87.4
ATR0743G183 Amborella trichopoda HOM05D004281 ORTHO05D004839 1.1e-56 224.2 127 86.6
RcHm_v2.0_Chr7g0227511 Rosa chinensis HOM05D004281 ORTHO05D004839 1.9e-56 223.4 132 82.6
QL08p018116 Quercus lobata HOM05D004281 ORTHO05D004839 2.1e-55 219.9 197 64.0
BcaB01g03343 Brassica carinata HOM05D001249 ORTHO05D003440 2.9e-49 199.5 168 64.3
CBR_g29269 Chara braunii HOM05D004281 ORTHO05D004839 1.4e-48 197.2 141 63.8
Duzib212G0492 Durio zibethinus HOM05D004281 ORTHO05D004839 2.5e-48 196.4 137 74.5
Nitab4.5_0004802g0010 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.7e-47 193.0 142 66.2
Sc13g0007610 Simmondsia chinensis HOM05D004281 ORTHO05D004839 1.3e-46 190.7 129 75.2
MBI07_g44299_MAGBIO Magnolia biondii HOM05D004281 ORTHO05D004839 5.1e-46 188.7 153 68.6
Nitab4.5_0010298g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 5.1e-46 188.7 171 58.5
Cre02.g088850 Chlamydomonas reinhardtii HOM05D004281 ORTHO05D004839 2.5e-45 186.4 145 62.1
unitig_85.g27225 Utricularia gibba HOM05D004281 ORTHO05D004839 2.0e-42 176.8 106 82.1
Hund22685 Selenicereus undatus HOM05D001165 ORTHO05D004839 3.4e-42 176.0 97 84.5
RcHm_v2.0_Chr7g0214271 Rosa chinensis HOM05D004281 ORTHO05D004839 4.2e-40 169.1 97 83.5
Nitab4.5_0000013g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.5e-37 159.8 136 61.0
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 2.8e-36 156.4 148 51.4
Duzib093G0607 Durio zibethinus HOM05D004281 ORTHO05D004839 6.3e-36 155.2 125 68.0
Cc00_g12430 Coffea canephora HOM05D004281 ORTHO05D004839 5.0e-33 145.6 77 92.2
Ca_28575_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 8.5e-33 144.8 132 51.5
CSS0034557 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 5.5e-32 142.1 122 64.8
Lj5A837G66 Lonicera japonica HOM05D004281 ORTHO05D004839 7.9e-31 138.3 74 90.5
CSS0012879 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 8.8e-30 134.8 157 53.5
Cc00_g08810 Coffea canephora HOM05D004281 ORTHO05D004839 2.0e-29 133.7 77 83.1
CSS0024434 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 9.7e-29 131.3 122 61.5
Cc00_g23590 Coffea canephora HOM05D004281 ORTHO05D004839 1.3e-28 131.0 86 77.9
C08p46660 Brassica napus HOM05D004281 ORTHO05D004839 1.4e-24 117.5 98 60.2
Cc00_g34060 Coffea canephora HOM05D004281 ORTHO05D004839 5.5e-24 115.5 80 71.2
C05p19750 Brassica napus HOM05D004281 ORTHO05D004839 1.0e-22 111.3 96 58.3
BolC8t52208H Brassica oleracea HOM05D004281 ORTHO05D004839 2.6e-21 106.7 118 47.5
TAR362G0423 Trochodendron aralioides HOM05D004281 ORTHO05D004839 3.7e-20 102.8 72 73.6
QL08p018107 Quercus lobata HOM05D004281 ORTHO05D004839 1.0e-17 94.7 47 93.6
BcaC05g25876 Brassica carinata HOM05D004281 ORTHO05D004839 2.2e-17 93.6 70 65.7
Cc00_g15820 Coffea canephora HOM05D004281 ORTHO05D004839 1.0e-14 84.7 62 72.6
Cc00_g15810 Coffea canephora HOM05D004281 ORTHO05D004839 5.7e-13 79.0 52 71.2
Cc00_g25460 Coffea canephora HOM05D004281 ORTHO05D004839 5.7e-13 79.0 42 85.7
Cc05_g00900 Coffea canephora HOM05D004281 ORTHO05D004839 7.5e-13 78.6 42 83.3
Lsat_1_v5_gn_8_13760 Lactuca sativa HOM05D004281 ORTHO05D004839 7.5e-13 78.6 125 44.8
Actinidia34560 Actinidia chinensis HOM05D028692 ORTHO05D015213 5.9e-10 68.9 37 83.8
Cc05_g01000 Coffea canephora HOM05D004281 ORTHO05D004839 4.2e-08 62.8 32 93.8
Cfa027194 Carpinus fangiana HOM05D004281 ORTHO05D004839 1.6e-07 60.8 96 34.4
AagrBONN_evm.TU.Sc2ySwM_344.4461 Anthoceros agrestis HOM05D004281 ORTHO05D004839 2.1e-07 60.5 45 66.7
Hma1.2p1_0872F.1_g231180 Hydrangea macrophylla HOM05D004281 ORTHO05D004839 2.7e-07 60.1 69 53.6
Cc00_g07230 Coffea canephora HOM05D004281 ORTHO05D004839 1.0e-06 58.2 40 77.5
Cc00_g07240 Coffea canephora HOM05D004281 ORTHO05D004839 1.0e-06 58.2 40 77.5
Cc05_g01010 Coffea canephora HOM05D004281 ORTHO05D004839 1.0e-06 58.2 32 87.5


User provided reference genes

Program Settings