Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.HGKJ8P Arachis hypogaea HOM05D005968 ORTHO05D007158 5.9e-35 150.2 70 100.0
arahy.Tifrunner.gnm1.ann1.QXT71M Arachis hypogaea HOM05D005968 ORTHO05D007158 8.8e-15 83.2 41 90.2
arahy.Tifrunner.gnm1.ann1.D6JQQQ Arachis hypogaea HOM05D005968 ORTHO05D007158 4.4e-14 80.9 40 92.5
Duzib187G1838 Durio zibethinus HOM05D005968 ORTHO05D007158 2.8e-13 78.2 40 87.5
Potri.018G106700 Populus trichocarpa HOM05D005968 ORTHO05D007158 2.8e-13 78.2 40 85.0
arahy.Tifrunner.gnm1.ann1.VCSM30 Arachis hypogaea HOM05D005968 ORTHO05D007158 6.3e-13 77.0 43 81.4
Gohir.D08G273400 Gossypium hirsutum HOM05D005968 ORTHO05D007158 6.3e-13 77.0 40 85.0
Gorai.004G291800 Gossypium raimondii HOM05D005968 ORTHO05D007158 6.3e-13 77.0 40 85.0
PGR102G1528 Punica granatum HOM05D005968 ORTHO05D007158 6.3e-13 77.0 40 85.0
Ca_21128_v3 Cicer arietinum L. HOM05D005968 ORTHO05D007158 8.2e-13 76.6 40 85.0
COL.COLO4_18810 Corchorus olitorius HOM05D000238 ORTHO05D007158 1.1e-12 76.3 40 85.0
Thecc.09G030600 Theobroma cacao HOM05D005968 ORTHO05D007158 1.1e-12 76.3 40 85.0
Glyma.02G204100 Glycine max HOM05D005968 ORTHO05D007158 1.4e-12 75.9 40 82.5
Potri.006G184300 Populus trichocarpa HOM05D005968 ORTHO05D007158 1.4e-12 75.9 40 82.5
TPR.G24874 Trifolium pratense HOM05D005968 ORTHO05D007158 1.4e-12 75.9 40 82.5
TAR626G1902 Trochodendron aralioides HOM05D005968 ORTHO05D007158 1.4e-12 75.9 56 66.1
BolC1t00793H Brassica oleracea HOM05D005968 ORTHO05D007158 2.4e-12 75.1 40 80.0
Lalb_Chr12g0198701 Lupinus albus HOM05D005968 ORTHO05D007158 2.4e-12 75.1 40 82.5
Nn2g12378 Nelumbo nucifera HOM05D005968 ORTHO05D007158 2.4e-12 75.1 40 85.0
Sabra18G0090900 Salix brachista HOM05D005968 ORTHO05D007158 2.4e-12 75.1 40 85.0
Sp7g28770 Schrenkiella parvula HOM05D005968 ORTHO05D007158 2.4e-12 75.1 40 80.0
GSVIVG01023605001 Vitis vinifera HOM05D005968 ORTHO05D007158 2.4e-12 75.1 40 82.5
Aa31LG2G19470 Aethionema arabicum HOM05D005968 ORTHO05D007158 3.1e-12 74.7 40 77.5
C01p08040 Brassica napus HOM05D005968 ORTHO05D007158 3.1e-12 74.7 40 77.5
CiPaw.16G111000 Carya illinoinensis HOM05D005968 ORTHO05D007158 3.1e-12 74.7 40 82.5
Nn8g39893 Nelumbo nucifera HOM05D005968 ORTHO05D007158 3.1e-12 74.7 40 82.5
PSO111G0029 Papaver somniferum HOM05D005968 ORTHO05D007158 3.1e-12 74.7 40 82.5
PSO561G0082 Papaver somniferum HOM05D005968 ORTHO05D007158 3.1e-12 74.7 40 82.5
Psat0s2403g0360 Pisum sativum HOM05D005968 ORTHO05D007158 3.1e-12 74.7 40 80.0
Sabra06G0140100 Salix brachista HOM05D005968 ORTHO05D007158 3.1e-12 74.7 40 82.5
EL10Ac8g18668 Beta vulgaris HOM05D005968 ORTHO05D007158 4.1e-12 74.3 40 82.5
Glyma.17G073700 Glycine max HOM05D005968 ORTHO05D007158 4.1e-12 74.3 40 82.5
Gohir.A08G251800 Gossypium hirsutum HOM05D005968 ORTHO05D007158 4.1e-12 74.3 40 82.5
Lj4g0027447 Lotus japonicus HOM05D005968 ORTHO05D007158 4.1e-12 74.3 40 82.5
BcaC09g51877 Brassica carinata HOM05D005968 ORTHO05D007158 5.3e-12 73.9 40 77.5
A01p07280 Brassica napus HOM05D005968 ORTHO05D007158 5.3e-12 73.9 40 77.5
BraA01t00677Z Brassica rapa HOM05D005968 ORTHO05D007158 5.3e-12 73.9 40 77.5
CSS0021374 Camellia sinensis var. sinensis HOM05D005968 ORTHO05D007158 5.3e-12 73.9 40 85.0
Thhalv10025727m.g Eutrema salsugineum HOM05D005968 ORTHO05D007158 5.3e-12 73.9 40 77.5
FvH4_1g00920 Fragaria vesca HOM05D005968 ORTHO05D007158 5.3e-12 73.9 56 64.3
FAN23G3092 Fragaria x ananassa HOM05D005968 ORTHO05D007158 5.3e-12 73.9 56 64.3
FAN26G1763 Fragaria x ananassa HOM05D005968 ORTHO05D007158 5.3e-12 73.9 56 64.3
Atru.chr7.47_Atru.chr7.48 Acer truncatum HOM05D005968 ORTHO05D007158 7.0e-12 73.6 40 82.5
CiPaw.15G168700 Carya illinoinensis HOM05D005968 ORTHO05D007158 7.0e-12 73.6 40 80.0
Ciclev10008980m.g Citrus clementina HOM05D005968 ORTHO05D007158 7.0e-12 73.6 40 82.5
MD15G1144700 Malus domestica HOM05D005968 ORTHO05D007158 7.0e-12 73.6 40 82.5
Prupe.7G263000 Prunus persica HOM05D005968 ORTHO05D007158 7.0e-12 73.6 40 82.5
THA.LOC104803560 Tarenaya hassleriana HOM05D005968 ORTHO05D007158 7.0e-12 73.6 40 80.0
CiPaw.15G168400 Carya illinoinensis HOM05D005968 ORTHO05D007158 9.1e-12 73.2 40 80.0
QL02p093270 Quercus lobata HOM05D005968 ORTHO05D007158 9.1e-12 73.2 40 82.5
BcaNung03430 Brassica carinata HOM05D005968 ORTHO05D007158 1.2e-11 72.8 40 77.5
Manes.14G143600 Manihot esculenta HOM05D005968 ORTHO05D007158 1.2e-11 72.8 40 82.5
Carub.0007s0964 Capsella rubella HOM05D005968 ORTHO05D007158 1.6e-11 72.4 56 58.9
CARHR238800 Cardamine hirsuta HOM05D005968 ORTHO05D007158 1.6e-11 72.4 56 60.7
MD02G1007400 Malus domestica HOM05D005968 ORTHO05D007158 1.6e-11 72.4 40 77.5
Medtr4g130840 Medicago truncatula HOM05D005968 ORTHO05D007158 1.6e-11 72.4 40 77.5
RcHm_v2.0_Chr2g0085621 Rosa chinensis HOM05D005968 ORTHO05D007158 1.6e-11 72.4 56 62.5
MELO3C010224.2 Cucumis melo HOM05D005968 ORTHO05D007158 2.0e-11 72.0 40 80.0
CsaV3_1G028970 Cucumis sativus L. HOM05D005968 ORTHO05D007158 2.0e-11 72.0 40 80.0
ClCG06G012410 Citrullus lanatus HOM05D005968 ORTHO05D007158 3.5e-11 71.2 40 77.5
DCAR_017911 Daucus carota HOM05D005968 ORTHO05D007158 3.5e-11 71.2 56 62.5
VMungo1215G2113 Vigna mungo HOM05D005968 ORTHO05D007158 3.5e-11 71.2 40 75.0
Cc06_g14960 Coffea canephora HOM05D005968 ORTHO05D007158 4.5e-11 70.9 40 77.5
Nitab4.5_0003623g0020 Nicotiana tabacum HOM05D005968 ORTHO05D007158 4.5e-11 70.9 40 80.0
Peaxi162Scf00401g00718 Petunia axillaris HOM05D005968 ORTHO05D007158 4.5e-11 70.9 40 80.0
Sopen07g001730 Solanum pennellii HOM05D005968 ORTHO05D007158 4.5e-11 70.9 40 80.0
PGSC0003DMG400011184 Solanum tuberosum HOM05D005968 ORTHO05D007158 4.5e-11 70.9 40 80.0
SalBow1G6433 Salvia bowleyana HOM05D005968 ORTHO05D007158 7.7e-11 70.1 40 75.0
unitig_52.g17565 Utricularia gibba HOM05D005968 ORTHO05D007158 7.7e-11 70.1 40 75.0
DCAR_019393 Daucus carota HOM05D005968 ORTHO05D007158 1.0e-10 69.7 40 80.0
Dinv41378 Davidia involucrata HOM05D005968 ORTHO05D007158 1.0e-10 69.7 40 80.0
Dinv42854 Davidia involucrata HOM05D005968 ORTHO05D007158 1.0e-10 69.7 40 80.0
Dinv43246 Davidia involucrata HOM05D005968 ORTHO05D007158 1.0e-10 69.7 40 80.0
Solyc07g005620.2 Solanum lycopersicum HOM05D005968 ORTHO05D007158 1.0e-10 69.7 40 77.5
AL7G21190 Arabidopsis lyrata HOM05D005968 ORTHO05D007158 1.3e-10 69.3 40 72.5
Hma1.2p1_0222F.1_g093590 Hydrangea macrophylla HOM05D005968 ORTHO05D007158 1.3e-10 69.3 40 80.0
Sed0018428 Sechium edule HOM05D005968 ORTHO05D007158 1.3e-10 69.3 40 80.0
Lsat_1_v5_gn_8_63401 Lactuca sativa HOM05D005968 ORTHO05D007158 1.7e-10 68.9 40 75.0
TWI34G0179 Tripterygium wilfordii HOM05D005968 ORTHO05D007158 1.7e-10 68.9 40 77.5
HanXRQChr09g0245781 Helianthus annuus HOM05D005968 ORTHO05D007158 2.9e-10 68.2 40 75.0
ATR0739G020 Amborella trichopoda HOM05D005968 ORTHO05D007158 5.0e-10 67.4 40 75.0
Eucgr.C02493 Eucalyptus grandis HOM05D005968 ORTHO05D007158 5.0e-10 67.4 40 75.0
Eucgr.C02541 Eucalyptus grandis HOM05D005968 ORTHO05D007158 5.0e-10 67.4 40 75.0
AT4G30900 Arabidopsis thaliana HOM05D005968 ORTHO05D007158 8.5e-10 66.6 40 70.0
Migut.K00326 Erythranthe guttata HOM05D005968 ORTHO05D007158 1.1e-09 66.2 40 72.5
SGA_v2.0_scaffold347G49545 Striga asiatica HOM05D005968 ORTHO05D007158 1.1e-09 66.2 40 70.0
Oeu038141.1 Olea europaea HOM05D005968 ORTHO05D007158 1.5e-09 65.9 40 70.0
CDE04G1812 Ceratophyllum demersum HOM05D005968 ORTHO05D007158 1.9e-09 65.5 40 67.5
ECA236G4418 Erigeron canadensis HOM05D005968 ORTHO05D007158 2.5e-09 65.1 40 70.0
CANSAT11G2689 Cannabis sativa HOM05D005968 ORTHO05D007158 7.2e-09 63.5 40 65.0
Zm00001eb086780 Zea mays HOM05D005968 ORTHO05D007158 1.6e-08 62.4 41 68.3
Zm00001eb420110 Zea mays HOM05D005968 ORTHO05D007158 1.6e-08 62.4 41 68.3
Lj7A459G65 Lonicera japonica HOM05D005968 ORTHO05D007158 2.1e-08 62.0 41 68.3
Cpa.g.sc46.156 Carica papaya HOM05D005968 ORTHO05D007158 2.7e-08 61.6 32 84.4
Os05g0279600 Oryza sativa ssp. japonica HOM05D005968 ORTHO05D007158 3.6e-08 61.2 41 65.9
HPP92_004698 Vanilla planifolia HOM05D005968 ORTHO05D007158 1.0e-07 59.7 41 68.3
Cfa020826 Carpinus fangiana HOM05D002374 ORTHO05D003594 2.3e-07 58.5 29 89.7
Mapoly0088s0077 Marchantia polymorpha HOM05D005968 ORTHO05D007158 2.3e-07 58.5 40 60.0
SEGI_19747 Sequoiadendron giganteum HOM05D005968 ORTHO05D007158 2.6e-06 55.1 46 54.3
Aqoxy2G01962_Aqoxy2G01963 Aquilegia oxysepala HOM05D005968 ORTHO05D007158 4.4e-06 54.3 29 82.8


User provided reference genes

Program Settings