Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.HG61QK Arachis hypogaea HOM05D003374 ORTHO05D009470 1.0e-54 216.5 107 100.0
arahy.Tifrunner.gnm1.ann1.YP763J Arachis hypogaea HOM05D003374 ORTHO05D009470 1.0e-54 216.5 107 100.0
Lalb_Chr05g0212181 Lupinus albus HOM05D003374 ORTHO05D009470 2.1e-28 129.0 104 66.3
Medtr5g022970 Medicago truncatula HOM05D003374 ORTHO05D009470 2.8e-28 128.6 100 67.0
Lj2g0014457 Lotus japonicus HOM05D003374 ORTHO05D009470 6.9e-27 124.0 97 61.9
Glyma.11G080800 Glycine max HOM05D003374 ORTHO05D009470 1.3e-25 119.8 101 62.4
Ca_24942_v3 Cicer arietinum L. HOM05D003374 ORTHO05D009470 2.2e-25 119.0 99 63.6
Lalb_Chr09g0321441 Lupinus albus HOM05D003374 ORTHO05D009470 1.9e-24 115.9 99 63.6
Phvul.002G104800 Phaseolus vulgaris HOM05D003374 ORTHO05D009470 4.2e-24 114.8 101 62.4
Glyma.01G162500 Glycine max HOM05D003374 ORTHO05D009470 1.6e-23 112.8 98 59.2
TPR.G20269 Trifolium pratense HOM05D003374 ORTHO05D009470 1.6e-23 112.8 92 64.1
VMungo1215G1047 Vigna mungo HOM05D003374 ORTHO05D009470 1.3e-22 109.8 91 64.8
Cfa007029 Carpinus fangiana HOM05D003374 ORTHO05D009470 1.1e-21 106.7 99 57.6
Prupe.7G175000 Prunus persica HOM05D003374 ORTHO05D009470 3.3e-21 105.1 99 57.6
Haze_03703 Corylus avellana HOM05D003374 ORTHO05D009415 7.4e-21 104.0 99 54.5
Manes.02G110400 Manihot esculenta HOM05D003374 ORTHO05D009470 7.4e-21 104.0 97 59.8
QL06p052079 Quercus lobata HOM05D003374 ORTHO05D009470 7.4e-21 104.0 96 58.3
RcHm_v2.0_Chr2g0098351 Rosa chinensis HOM05D003374 ORTHO05D009470 7.4e-21 104.0 97 56.7
Thecc.01G011500 Theobroma cacao HOM05D003374 ORTHO05D009470 3.7e-20 101.7 97 51.5
FAN23G1041 Fragaria x ananassa HOM05D003374 ORTHO05D009470 8.1e-20 100.5 97 53.6
FAN28G2426 Fragaria x ananassa HOM05D003374 ORTHO05D009470 8.1e-20 100.5 97 53.6
CiPaw.08G125800 Carya illinoinensis HOM05D003374 ORTHO05D009470 1.8e-19 99.4 99 52.5
FvH4_1g11080 Fragaria vesca HOM05D003374 ORTHO05D009470 1.8e-19 99.4 97 52.6
FAN26G1101 Fragaria x ananassa HOM05D003374 ORTHO05D009470 4.0e-19 98.2 97 53.6
Eucgr.I02305 Eucalyptus grandis HOM05D003374 ORTHO05D009470 1.2e-18 96.7 100 52.0
Gohir.A02G174300 Gossypium hirsutum HOM05D003374 ORTHO05D009470 3.4e-18 95.1 97 53.6
TWI73G0454 Tripterygium wilfordii HOM05D003374 ORTHO05D009470 5.8e-18 94.4 98 54.1
Atru.chr3.907 Acer truncatum HOM05D003374 ORTHO05D009470 7.6e-18 94.0 97 53.6
Potri.005G107800 Populus trichocarpa HOM05D003374 ORTHO05D009470 7.6e-18 94.0 98 56.1
Cpa.g.sc6.313 Carica papaya HOM05D003374 ORTHO05D009470 9.9e-18 93.6 99 57.6
Gohir.D03G005500 Gossypium hirsutum HOM05D003374 ORTHO05D009470 1.3e-17 93.2 97 50.5
Gorai.003G005900 Gossypium raimondii HOM05D003374 ORTHO05D009470 1.3e-17 93.2 97 50.5
MD15G1237400 Malus domestica HOM05D003374 ORTHO05D009470 2.2e-17 92.4 98 53.1
Sabra05G0088300 Salix brachista HOM05D003374 ORTHO05D009470 2.9e-17 92.0 98 53.1
CDE05G3297 Ceratophyllum demersum HOM05D003374 ORTHO05D009470 6.4e-17 90.9 97 48.5
Duzib145G0002 Durio zibethinus HOM05D003374 ORTHO05D009470 6.4e-17 90.9 101 52.5
Rhsim10G0205800 Rhododendron simsii HOM05D003374 ORTHO05D009470 1.4e-16 89.7 97 48.5
Ciclev10026638m.g Citrus clementina HOM05D003374 ORTHO05D009470 5.5e-16 87.8 97 52.6
FAN19G0939 Fragaria x ananassa HOM05D003374 ORTHO05D009470 1.6e-15 86.3 110 45.5
GSVIVG01005193001 Vitis vinifera HOM05D003374 ORTHO05D009470 4.6e-15 84.7 97 49.5
CANSAT01G1253 Cannabis sativa HOM05D003374 ORTHO05D009470 6.0e-15 84.3 99 51.5
CDE05G2149 Ceratophyllum demersum HOM05D003374 ORTHO05D009470 6.0e-15 84.3 97 47.4
Dinv08548 Davidia involucrata HOM05D003374 ORTHO05D009470 7.9e-15 84.0 97 49.5
Hma1.2p1_0315F.1_g122600 Hydrangea macrophylla HOM05D003374 ORTHO05D009470 1.3e-14 83.2 97 48.5
vmacro20496 Vaccinium macrocarpon HOM05D003374 ORTHO05D009470 3.9e-14 81.6 100 50.0
MBI09_g46000_MAGBIO Magnolia biondii HOM05D003374 ORTHO05D009470 2.5e-13 79.0 86 52.3
PGR102G2171 Punica granatum HOM05D003374 ORTHO05D009470 2.5e-13 79.0 96 44.8
CSS0026426 Camellia sinensis var. sinensis HOM05D003374 ORTHO05D009415 4.3e-13 78.2 97 43.3
Cc07_g11310 Coffea canephora HOM05D003374 ORTHO05D009470 4.3e-13 78.2 83 50.6
Cc08_g04880 Coffea canephora HOM05D003374 ORTHO05D009470 4.3e-13 78.2 83 50.6
PSO675G4674 Papaver somniferum HOM05D003374 ORTHO05D009470 5.6e-13 77.8 91 53.8
Sp3g31120 Schrenkiella parvula HOM05D003374 ORTHO05D009470 1.3e-12 76.6 66 56.1
A07p03300 Brassica napus HOM05D003374 ORTHO05D009415 2.8e-12 75.5 99 44.4
C07p05580 Brassica napus HOM05D003374 ORTHO05D009470 3.7e-12 75.1 98 44.9
BcaC06g36303 Brassica carinata HOM05D003374 ORTHO05D009470 4.8e-12 74.7 98 44.9
PSO541G4788 Papaver somniferum HOM05D003374 ORTHO05D009470 4.8e-12 74.7 91 51.6
TAR625G1139 Trochodendron aralioides HOM05D003374 ORTHO05D009470 4.8e-12 74.7 100 46.0
BcaB03g16544 Brassica carinata HOM05D003374 ORTHO05D009470 1.1e-11 73.6 98 43.9
BraA07t28128Z Brassica rapa HOM05D003374 ORTHO05D009470 1.1e-11 73.6 98 43.9
BcaB08g34755 Brassica carinata HOM05D003374 ORTHO05D009470 1.8e-11 72.8 98 43.9
BcaC01g02894 Brassica carinata HOM05D003374 ORTHO05D009470 3.1e-11 72.0 98 42.9
C03p58640 Brassica napus HOM05D003374 ORTHO05D009470 3.1e-11 72.0 98 42.9
BolC3t18125H Brassica oleracea HOM05D003374 ORTHO05D009470 3.1e-11 72.0 98 42.9
Thhalv10022897m.g Eutrema salsugineum HOM05D003374 ORTHO05D009470 3.1e-11 72.0 66 53.0
Aa31LG8G14990 Aethionema arabicum HOM05D003374 ORTHO05D009470 5.3e-11 71.2 94 46.8
Carub.0003s3182 Capsella rubella HOM05D003374 ORTHO05D009470 5.3e-11 71.2 97 43.3
AT2G17710 Arabidopsis thaliana HOM05D003374 ORTHO05D009470 1.2e-10 70.1 66 51.5
A06p33690 Brassica napus HOM05D003374 ORTHO05D009470 1.2e-10 70.1 98 41.8
BolC7t40958H Brassica oleracea HOM05D003374 ORTHO05D009415 1.2e-10 70.1 100 44.0
BraA06t26303Z Brassica rapa HOM05D003374 ORTHO05D009470 1.2e-10 70.1 98 41.8
PGSC0003DMG400003663 Solanum tuberosum HOM05D003374 ORTHO05D009470 1.2e-10 70.1 98 48.0
MSTRG.24362 Avicennia marina HOM05D003374 ORTHO05D009470 2.0e-10 69.3 83 44.6
THA.LOC104819731 Tarenaya hassleriana HOM05D003374 ORTHO05D009470 2.0e-10 69.3 69 50.7
Nitab4.5_0006892g0010 Nicotiana tabacum HOM05D003374 ORTHO05D009470 2.6e-10 68.9 100 44.0
CARHR108000 Cardamine hirsuta HOM05D003374 ORTHO05D009470 3.4e-10 68.6 66 50.0
Peaxi162Scf00328g00118 Petunia axillaris HOM05D003374 ORTHO05D009470 4.5e-10 68.2 101 44.6
Potri.005G107900 Populus trichocarpa HOM05D003374 ORTHO05D009470 4.5e-10 68.2 72 48.6
Sopen02g028160 Solanum pennellii HOM05D003374 ORTHO05D009470 7.6e-10 67.4 98 45.9
MSTRG.22233 Avicennia marina HOM05D003374 ORTHO05D009470 1.0e-09 67.0 84 45.2
Nitab4.5_0002105g0080 Nicotiana tabacum HOM05D003374 ORTHO05D009470 1.0e-09 67.0 98 45.9
AL3G50710 Arabidopsis lyrata HOM05D003374 ORTHO05D009470 1.3e-09 66.6 66 50.0
EL10Ac9g21336 Beta vulgaris HOM05D003374 ORTHO05D009470 1.3e-09 66.6 86 46.5
CAN.G890.28 Capsicum annuum HOM05D003374 ORTHO05D009470 3.8e-09 65.1 97 42.3
AUR62010008 Chenopodium quinoa HOM05D003374 ORTHO05D010386 3.8e-09 65.1 99 40.4
AUR62012999 Chenopodium quinoa HOM05D003374 ORTHO05D009470 6.5e-09 64.3 92 42.4
Duzib145G0007 Durio zibethinus HOM05D003374 ORTHO05D009470 8.4e-09 63.9 68 52.9
Duzib147G0965 Durio zibethinus HOM05D003374 ORTHO05D009470 8.4e-09 63.9 68 52.9
Solyc02g083380.3 Solanum lycopersicum HOM05D003374 ORTHO05D009470 8.4e-09 63.9 60 56.7
THA.LOC104804280 Tarenaya hassleriana HOM05D003374 ORTHO05D009470 1.4e-08 63.2 106 41.5
SalBow6G5967 Salvia bowleyana HOM05D003374 ORTHO05D009470 1.9e-08 62.8 76 46.1
Oeu022073.1 Olea europaea HOM05D003374 ORTHO05D009470 3.2e-08 62.0 88 42.0
Aqoxy6G01986 Aquilegia oxysepala HOM05D003374 ORTHO05D009470 4.2e-08 61.6 64 50.0
Hund00012 Selenicereus undatus HOM05D003374 ORTHO05D009470 4.2e-08 61.6 99 44.4
Migut.N02761 Erythranthe guttata HOM05D003374 ORTHO05D009470 2.1e-07 59.3 48 60.4
SalBow8G5385 Salvia bowleyana HOM05D003374 ORTHO05D009470 1.0e-06 57.0 76 42.1
Os04g0560700 Oryza sativa ssp. japonica HOM05D003374 ORTHO05D009470 2.3e-06 55.8 107 33.6


User provided reference genes

Program Settings