Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.HDY6JH Arachis hypogaea HOM05D006033 ORTHO05D007112 3.2e-34 147.9 78 100.0
arahy.Tifrunner.gnm1.ann1.RUY2TK Arachis hypogaea HOM05D005906 ORTHO05D007359 1.5e-18 95.9 81 71.6
arahy.Tifrunner.gnm1.ann1.Z456W4 Arachis hypogaea HOM05D006033 ORTHO05D007112 2.1e-17 92.0 55 89.1
arahy.Tifrunner.gnm1.ann1.YV4Q3G Arachis hypogaea HOM05D006033 ORTHO05D007112 4.7e-17 90.9 55 87.3
Lalb_Chr08g0237161 Lupinus albus HOM05D006033 ORTHO05D007112 2.4e-13 78.6 55 74.5
CiPaw.12G043200 Carya illinoinensis HOM05D006033 ORTHO05D007112 3.9e-11 71.2 55 65.5
Glyma.05G048200 Glycine max HOM05D006033 ORTHO05D007112 6.6e-11 70.5 55 69.1
Actinidia36806 Actinidia chinensis HOM05D006033 ORTHO05D007112 1.1e-10 69.7 55 61.8
COL.COLO4_28129 Corchorus olitorius HOM05D006033 ORTHO05D007112 1.1e-10 69.7 55 65.5
Psat5g051280 Pisum sativum HOM05D006033 ORTHO05D007112 1.1e-10 69.7 55 65.5
TAR374G1541 Trochodendron aralioides HOM05D006033 ORTHO05D007112 1.9e-10 68.9 55 60.0
TPR.G14208 Trifolium pratense HOM05D006033 ORTHO05D007112 3.3e-10 68.2 55 63.6
Dinv11172 Davidia involucrata HOM05D006033 ORTHO05D007112 4.3e-10 67.8 55 61.8
TWI23G0550 Tripterygium wilfordii HOM05D006033 ORTHO05D007112 4.3e-10 67.8 55 60.0
Gohir.D12G192000 Gossypium hirsutum HOM05D006033 ORTHO05D007112 5.6e-10 67.4 55 65.5
Gorai.008G206300 Gossypium raimondii HOM05D006033 ORTHO05D007112 5.6e-10 67.4 55 65.5
Ca_16046_v3 Cicer arietinum L. HOM05D006033 ORTHO05D007112 7.3e-10 67.0 55 63.6
VMungo1215G0762 Vigna mungo HOM05D006033 ORTHO05D007112 7.3e-10 67.0 55 67.3
Actinidia08871 Actinidia chinensis HOM05D006033 ORTHO05D007112 9.5e-10 66.6 55 60.0
Phvul.003G211200 Phaseolus vulgaris HOM05D006033 ORTHO05D007112 9.5e-10 66.6 55 65.5
Thecc.03G129200 Theobroma cacao HOM05D006033 ORTHO05D007112 9.5e-10 66.6 55 63.6
Duzib205G1080 Durio zibethinus HOM05D006033 ORTHO05D007112 1.2e-09 66.2 55 63.6
Medtr2g045230 Medicago truncatula HOM05D006033 ORTHO05D007112 1.2e-09 66.2 55 60.0
Glyma.17G130200 Glycine max HOM05D006033 ORTHO05D007112 3.6e-09 64.7 55 65.5
Cfa018795 Carpinus fangiana HOM05D006033 ORTHO05D007112 4.7e-09 64.3 55 61.8
MD14G1157100 Malus domestica HOM05D006033 ORTHO05D007112 4.7e-09 64.3 55 61.8
Manes.06G119600 Manihot esculenta HOM05D006033 ORTHO05D007112 4.7e-09 64.3 55 63.6
Haze_07138 Corylus avellana HOM05D006033 ORTHO05D007112 6.2e-09 63.9 55 61.8
Medtr3g099240 Medicago truncatula HOM05D006033 ORTHO05D007112 6.2e-09 63.9 55 58.2
QL10p002899 Quercus lobata HOM05D006033 ORTHO05D007112 1.0e-08 63.2 55 61.8
Gohir.A12G189600 Gossypium hirsutum HOM05D006033 ORTHO05D007112 1.4e-08 62.8 55 58.2
vmacro16716 Vaccinium macrocarpon HOM05D006033 ORTHO05D007112 1.8e-08 62.4 55 58.2
Hund02441 Selenicereus undatus HOM05D006033 ORTHO05D007112 2.3e-08 62.0 55 54.5
Lj5A96T53 Lonicera japonica HOM05D006033 ORTHO05D007112 3.1e-08 61.6 55 52.7
MD06G1141900 Malus domestica HOM05D006033 ORTHO05D007112 3.1e-08 61.6 55 60.0
Sed0010085 Sechium edule HOM05D006033 ORTHO05D007112 3.1e-08 61.6 55 60.0
Atru.chr6.1793 Acer truncatum HOM05D006033 ORTHO05D007112 4.0e-08 61.2 55 58.2
Prupe.5G151100 Prunus persica HOM05D006033 ORTHO05D007112 5.2e-08 60.8 55 58.2
Sabra15G0117100 Salix brachista HOM05D006033 ORTHO05D007112 5.2e-08 60.8 56 57.1
EL10Ac5g11413 Beta vulgaris HOM05D006033 ORTHO05D007112 6.8e-08 60.5 55 56.4
CSS0003528 Camellia sinensis var. sinensis HOM05D006033 ORTHO05D007112 6.8e-08 60.5 56 57.1
Eucgr.K02726 Eucalyptus grandis HOM05D006033 ORTHO05D007112 1.2e-07 59.7 55 54.5
Potri.015G096300 Populus trichocarpa HOM05D006033 ORTHO05D007112 1.5e-07 59.3 56 57.1
GSVIVG01008543001 Vitis vinifera HOM05D006033 ORTHO05D007112 2.0e-07 58.9 55 52.7
Ciclev10031478m.g Citrus clementina HOM05D006033 ORTHO05D007112 3.4e-07 58.2 55 54.5
RcHm_v2.0_Chr7g0190201 Rosa chinensis HOM05D006033 ORTHO05D007112 3.4e-07 58.2 55 56.4
HanXRQChr05g0155041 Helianthus annuus HOM05D006033 ORTHO05D007112 4.4e-07 57.8 55 56.4
TWI39G0081 Tripterygium wilfordii HOM05D006033 ORTHO05D007112 7.5e-07 57.0 55 56.4
FvH4_5g08320 Fragaria vesca HOM05D006033 ORTHO05D007112 9.8e-07 56.6 55 52.7
FAN18G2263 Fragaria x ananassa HOM05D006033 ORTHO05D007112 9.8e-07 56.6 55 52.7
Aqoxy5G03378 Aquilegia oxysepala HOM05D006033 ORTHO05D007112 1.7e-06 55.8 56 55.4
Cpa.g.sc13.116 Carica papaya HOM05D006033 ORTHO05D007112 2.9e-06 55.1 55 58.2
CsaV3_1G009650 Cucumis sativus L. HOM05D006033 ORTHO05D007112 2.9e-06 55.1 55 54.5
Sc10g0010470 Simmondsia chinensis HOM05D006033 ORTHO05D007112 2.9e-06 55.1 55 49.1
FAN04G2747 Fragaria x ananassa HOM05D006033 ORTHO05D007112 3.7e-06 54.7 55 52.7
FAN13G1806 Fragaria x ananassa HOM05D006033 ORTHO05D007112 3.7e-06 54.7 55 52.7
AUR62029613 Chenopodium quinoa HOM05D006033 ORTHO05D007112 4.9e-06 54.3 55 52.7
AUR62034824 Chenopodium quinoa HOM05D006033 ORTHO05D007112 4.9e-06 54.3 55 52.7
MELO3C002361.2 Cucumis melo HOM05D006033 ORTHO05D007112 4.9e-06 54.3 55 52.7
PGR044G2394 Punica granatum HOM05D006033 ORTHO05D007112 4.9e-06 54.3 55 52.7
Cfa014305 Carpinus fangiana HOM05D004734 ORTHO05D006019 8.3e-06 53.5 29 86.2
Haze_12752 Corylus avellana HOM05D004734 ORTHO05D006019 8.3e-06 53.5 29 86.2
Nitab4.5_0004750g0050 Nicotiana tabacum HOM05D006033 ORTHO05D007112 8.3e-06 53.5 55 54.5


User provided reference genes

Program Settings