Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.HCBU45 Arachis hypogaea HOM05D002206 ORTHO05D002219 1.6e-228 795.8 412 100.0
Phvul.010G131400 Phaseolus vulgaris HOM05D002206 ORTHO05D002219 1.2e-114 417.5 374 64.4
Glyma.16G006500 Glycine max HOM05D002206 ORTHO05D002219 1.3e-113 414.1 374 66.6
Glyma.07G037100 Glycine max HOM05D002206 ORTHO05D002219 2.2e-113 413.3 374 67.1
Ca_05006_v3 Cicer arietinum L. HOM05D002206 ORTHO05D002219 4.1e-112 409.1 381 64.6
TPR.G32506 Trifolium pratense HOM05D002206 ORTHO05D002219 2.7e-111 406.4 388 62.6
Psat4g183000 Pisum sativum HOM05D002206 ORTHO05D002219 5.9e-111 405.2 386 63.0
VMungo0331G1548 Vigna mungo HOM05D002206 ORTHO05D002219 2.5e-109 399.8 373 61.4
Lj3g0019571 Lotus japonicus HOM05D002206 ORTHO05D002219 4.3e-109 399.1 406 60.1
Medtr8g020330 Medicago truncatula HOM05D002206 ORTHO05D002219 9.5e-109 397.9 374 62.8
Lalb_Chr04g0263411 Lupinus albus HOM05D002206 ORTHO05D002219 3.3e-101 372.9 375 59.5
Prupe.3G042900 Prunus persica HOM05D002206 ORTHO05D002219 3.8e-73 279.6 378 48.7
GSVIVG01016777001 Vitis vinifera HOM05D002206 ORTHO05D002219 8.7e-70 268.5 390 47.7
Cfa003540 Carpinus fangiana HOM05D002206 ORTHO05D002219 6.2e-68 262.3 323 50.8
Manes.11G021500 Manihot esculenta HOM05D002206 ORTHO05D002219 2.4e-67 260.4 377 49.9
CiPaw.02G136600 Carya illinoinensis HOM05D002206 ORTHO05D002219 2.0e-66 257.3 336 49.7
Thecc.06G118700 Theobroma cacao HOM05D002206 ORTHO05D002219 2.0e-66 257.3 367 46.9
Sabra03G0037200 Salix brachista HOM05D002206 ORTHO05D002219 2.6e-66 256.9 369 48.5
Manes.04G143700 Manihot esculenta HOM05D002206 ORTHO05D002219 4.5e-66 256.1 372 48.4
QL05p008151 Quercus lobata HOM05D002206 ORTHO05D002219 4.5e-66 256.1 345 49.6
Haze_16020 Corylus avellana HOM05D002206 ORTHO05D002219 5.8e-66 255.8 303 54.1
TAR626G1279 Trochodendron aralioides HOM05D002206 ORTHO05D002219 9.9e-66 255.0 377 47.5
Sabra01G0141100 Salix brachista HOM05D002206 ORTHO05D002219 4.2e-64 249.6 371 48.2
Potri.001G170200 Populus trichocarpa HOM05D002206 ORTHO05D002219 5.5e-64 249.2 317 49.8
FAN02G0106 Fragaria x ananassa HOM05D002206 ORTHO05D002219 2.3e-62 243.8 353 45.9
FAN09G1436 Fragaria x ananassa HOM05D002206 ORTHO05D002219 3.0e-62 243.4 361 45.4
FAN05G1508 Fragaria x ananassa HOM05D002206 ORTHO05D002219 3.9e-62 243.0 362 45.0
Gohir.D10G054800 Gossypium hirsutum HOM05D002206 ORTHO05D002219 6.7e-62 242.3 331 46.2
Ciclev10025094m.g Citrus clementina HOM05D002206 ORTHO05D002219 1.1e-61 241.5 371 47.2
RcHm_v2.0_Chr2g0145091 Rosa chinensis HOM05D002206 ORTHO05D002219 1.1e-61 241.5 365 46.8
Potri.003G063700 Populus trichocarpa HOM05D002206 ORTHO05D002219 1.5e-61 241.1 316 48.7
FAN14G4975 Fragaria x ananassa HOM05D002206 ORTHO05D002219 1.9e-61 240.7 361 45.2
Gorai.011G058300 Gossypium raimondii HOM05D002206 ORTHO05D002219 1.9e-61 240.7 331 45.9
FvH4_6g34560 Fragaria vesca HOM05D002206 ORTHO05D002219 2.5e-61 240.4 361 45.2
CiPaw.01G219900 Carya illinoinensis HOM05D002206 ORTHO05D002219 3.3e-61 240.0 311 48.6
Cpa.g.sc25.107 Carica papaya HOM05D002206 ORTHO05D002219 5.6e-61 239.2 327 50.5
Actinidia39083 Actinidia chinensis HOM05D002206 ORTHO05D002219 1.4e-59 234.6 356 45.5
Duzib192G0904 Durio zibethinus HOM05D002206 ORTHO05D002219 1.4e-59 234.6 344 46.5
Gohir.A10G053000 Gossypium hirsutum HOM05D002206 ORTHO05D002219 1.4e-59 234.6 331 45.3
TAR624G0441 Trochodendron aralioides HOM05D002206 ORTHO05D002219 3.1e-59 233.4 339 45.4
Duzib235G0320 Durio zibethinus HOM05D002206 ORTHO05D002219 6.9e-59 232.3 297 49.2
Dinv04034 Davidia involucrata HOM05D002206 ORTHO05D002219 2.0e-58 230.7 341 45.7
COL.COLO4_30770 Corchorus olitorius HOM05D002206 ORTHO05D002219 1.1e-56 224.9 331 45.0
Duzib160G0193 Durio zibethinus HOM05D002206 ORTHO05D002219 1.9e-56 224.2 315 46.3
Nn8g38715 Nelumbo nucifera HOM05D002206 ORTHO05D002219 2.1e-55 220.7 327 47.4
CSS0024498 Camellia sinensis var. sinensis HOM05D002206 ORTHO05D002219 2.7e-55 220.3 285 50.2
TWI75G1747 Tripterygium wilfordii HOM05D002206 ORTHO05D002219 6.7e-54 215.7 313 46.0
Rhsim12G0209300 Rhododendron simsii HOM05D002206 ORTHO05D002219 1.9e-53 214.2 355 43.4
CANSAT56G1008 Cannabis sativa HOM05D002206 ORTHO05D002219 1.4e-51 208.0 324 43.5
Lj5A38T41 Lonicera japonica HOM05D002206 ORTHO05D002219 3.1e-51 206.8 363 42.1
MD09G1184800 Malus domestica HOM05D002206 ORTHO05D002219 4.1e-51 206.5 378 40.2
CsaV3_7G034530 Cucumis sativus L. HOM05D001583 ORTHO05D001900 2.0e-50 204.1 330 43.9
Hma1.2p1_0291F.1_g115170 Hydrangea macrophylla HOM05D002206 ORTHO05D002219 2.0e-50 204.1 271 49.4
MD17G1168700 Malus domestica HOM05D002206 ORTHO05D002219 7.6e-50 202.2 354 40.7
MBI13_g11364_MAGBIO Magnolia biondii HOM05D002206 ORTHO05D002219 1.3e-49 201.4 388 43.0
Sed0013927 Sechium edule HOM05D002206 ORTHO05D002219 1.3e-49 201.4 331 45.9
PGR102G2864 Punica granatum HOM05D002206 ORTHO05D002219 3.2e-48 196.8 297 47.1
DCAR_007643 Daucus carota HOM05D002206 ORTHO05D002219 8.7e-46 188.7 342 39.8
Aqoxy7G01087 Aquilegia oxysepala HOM05D002206 ORTHO05D002219 1.1e-45 188.3 386 39.4
Hma1.2p1_0496F.1_g166190 Hydrangea macrophylla HOM05D002206 ORTHO05D002219 1.9e-45 187.6 331 42.0
ATR0598G183 Amborella trichopoda HOM05D002206 ORTHO05D002219 2.5e-45 187.2 367 43.1
PGSC0003DMG400002481 Solanum tuberosum HOM05D002206 ORTHO05D002219 3.7e-44 183.3 331 39.0
Nitab4.5_0002072g0040 Nicotiana tabacum HOM05D002206 ORTHO05D002219 5.3e-43 179.5 353 38.5
Sopen03g040810 Solanum pennellii HOM05D002206 ORTHO05D002219 1.2e-42 178.3 328 38.7
PSO421G0732 Papaver somniferum HOM05D002206 ORTHO05D002219 1.5e-42 177.9 296 42.9
CAN.G862.28 Capsicum annuum HOM05D002206 ORTHO05D002219 2.6e-42 177.2 311 39.2
Solyc03g121990.4 Solanum lycopersicum HOM05D002206 ORTHO05D002219 2.6e-42 177.2 328 38.4
Oeu058722.2 Olea europaea HOM05D002206 ORTHO05D002219 3.4e-42 176.8 297 41.1
Sc10g0007860 Simmondsia chinensis HOM05D002206 ORTHO05D002219 3.4e-42 176.8 349 38.1
Peaxi162Scf00038g01824 Petunia axillaris HOM05D002206 ORTHO05D002219 4.5e-42 176.4 385 35.3
EL10Ac7g16404 Beta vulgaris HOM05D002206 ORTHO05D002219 7.7e-42 175.6 307 42.3
Migut.D00942 Erythranthe guttata HOM05D002206 ORTHO05D002219 7.7e-42 175.6 311 39.2
Oeu007565.1 Olea europaea HOM05D002206 ORTHO05D002219 1.3e-41 174.9 276 40.9
Ah.08g216740 Amaranthus hybridus HOM05D002206 ORTHO05D002219 2.9e-41 173.7 349 39.8
MSTRG.4788 Avicennia marina HOM05D002206 ORTHO05D002219 5.0e-41 172.9 345 38.6
Nitab4.5_0012253g0010 Nicotiana tabacum HOM05D002206 ORTHO05D002219 6.5e-41 172.6 362 38.4
Atru.chr1.3913_Atru.chr1.3914 Acer truncatum HOM05D002206 ORTHO05D002219 1.4e-40 171.4 324 40.4
Hund05742 Selenicereus undatus HOM05D002206 ORTHO05D002219 1.9e-40 171.0 305 41.3
AUR62001491 Chenopodium quinoa HOM05D002206 ORTHO05D002219 4.2e-40 169.9 370 37.6
Sp5g27710 Schrenkiella parvula HOM05D002206 ORTHO05D002219 4.2e-40 169.9 368 38.6
PSO063G5513 Papaver somniferum HOM05D002206 ORTHO05D002219 5.5e-40 169.5 371 38.8
ECA234G1457 Erigeron canadensis HOM05D002206 ORTHO05D002219 9.4e-40 168.7 306 38.6
Eucgr.J02823 Eucalyptus grandis HOM05D002206 ORTHO05D002219 9.4e-40 168.7 296 39.9
HanXRQChr10g0312061 Helianthus annuus HOM05D002206 ORTHO05D002219 2.1e-39 167.5 314 39.8
AL2G32330 Arabidopsis lyrata HOM05D002206 ORTHO05D002219 2.7e-39 167.2 373 37.5
Thhalv10018282m.g Eutrema salsugineum HOM05D002206 ORTHO05D002219 2.7e-39 167.2 368 37.8
AUR62009879 Chenopodium quinoa HOM05D002206 ORTHO05D002219 3.9e-38 163.3 368 37.0
Carub.0002s1950 Capsella rubella HOM05D002206 ORTHO05D002219 1.5e-37 161.4 325 40.6
CARHR065570 Cardamine hirsuta HOM05D002206 ORTHO05D002219 2.0e-37 161.0 361 38.2
AT1G72650 Arabidopsis thaliana HOM05D002206 ORTHO05D002219 4.3e-37 159.8 368 38.9
BcaC08g45698 Brassica carinata HOM05D002206 ORTHO05D002219 3.7e-36 156.8 366 35.8
BolC6t38584H Brassica oleracea HOM05D002206 ORTHO05D002219 3.7e-36 156.8 366 35.8
A07p30130 Brassica napus HOM05D002206 ORTHO05D002219 2.4e-35 154.1 366 34.7
Lsat_1_v5_gn_5_135921 Lactuca sativa HOM05D002206 ORTHO05D002219 2.4e-35 154.1 301 38.9
SalBow7G3112 Salvia bowleyana HOM05D002206 ORTHO05D002219 6.9e-35 152.5 342 33.3
BraA07t30651Z Brassica rapa HOM05D002206 ORTHO05D002219 1.2e-34 151.8 366 34.4
THA.LOC104808052 Tarenaya hassleriana HOM05D002206 ORTHO05D002219 5.9e-34 149.4 332 37.7
BolC6t39738H Brassica oleracea HOM05D002118 ORTHO05D002219 3.8e-33 146.7 365 35.9
vmacro17055 Vaccinium macrocarpon HOM05D002206 ORTHO05D002219 3.8e-33 146.7 367 35.1
BcaB03g15681 Brassica carinata HOM05D002206 ORTHO05D002219 1.1e-32 145.2 369 37.9
BcaC08g46708 Brassica carinata HOM05D002206 ORTHO05D002219 1.1e-32 145.2 365 35.6
Aa31LG7G2240 Aethionema arabicum HOM05D002206 ORTHO05D002219 4.2e-32 143.3 277 41.9
C06p46970 Brassica napus HOM05D002206 ORTHO05D002219 1.6e-31 141.4 365 34.5
CDE06G2062 Ceratophyllum demersum HOM05D002206 ORTHO05D002219 1.6e-31 141.4 333 36.3
A07p38810 Brassica napus HOM05D002206 ORTHO05D002219 2.7e-31 140.6 365 34.5
BraA07t31435Z Brassica rapa HOM05D002206 ORTHO05D002219 2.7e-31 140.6 365 34.5
SGA_v2.0_scaffold68G22883 Striga asiatica HOM05D002206 ORTHO05D002219 5.2e-30 136.3 245 40.4
Aa31LG4G3020 Aethionema arabicum HOM05D002206 ORTHO05D002219 1.5e-29 134.8 346 33.5
CDE07G0096 Ceratophyllum demersum HOM05D002206 ORTHO05D002219 1.7e-28 131.3 334 37.1
AL1G29750 Arabidopsis lyrata HOM05D002206 ORTHO05D002219 2.8e-28 130.6 300 36.7
Carub.0001s1723 Capsella rubella HOM05D002206 ORTHO05D002219 8.2e-28 129.0 235 38.3
C06p34820 Brassica napus HOM05D002206 ORTHO05D002219 1.4e-27 128.3 318 34.3
Os02g0776700 Oryza sativa ssp. japonica HOM05D002206 ORTHO05D002219 1.8e-27 127.9 267 36.0
AT1G17460 Arabidopsis thaliana HOM05D002206 ORTHO05D002219 2.4e-27 127.5 297 36.0
Cc00_g25540 Coffea canephora HOM05D002206 ORTHO05D002219 2.4e-27 127.5 206 41.7
Thhalv10007199m.g Eutrema salsugineum HOM05D002206 ORTHO05D002219 2.4e-27 127.5 237 37.1
Zm00001eb256690 Zea mays HOM05D002206 ORTHO05D002219 4.1e-27 126.7 309 36.6
Sp1g15600 Schrenkiella parvula HOM05D002206 ORTHO05D002219 2.0e-26 124.4 268 38.1
CARHR018060 Cardamine hirsuta HOM05D002206 ORTHO05D002219 5.9e-26 122.9 283 34.6
SEGI_30968 Sequoiadendron giganteum HOM05D002206 ORTHO05D002219 2.7e-23 114.0 338 33.1
C05p15870 Brassica napus HOM05D002206 ORTHO05D002219 1.0e-22 112.1 231 35.9
BolC5t30291H Brassica oleracea HOM05D002206 ORTHO05D002219 1.0e-22 112.1 231 35.9
MELO3C024360.2 Cucumis melo HOM05D002206 ORTHO05D002219 2.3e-22 110.9 187 42.8
ATR0680G183 Amborella trichopoda HOM05D002206 ORTHO05D002219 8.8e-22 109.0 235 38.3
A06p13390 Brassica napus HOM05D002206 ORTHO05D002219 7.5e-21 105.9 227 34.8
BraA06t24491Z Brassica rapa HOM05D002206 ORTHO05D002219 7.5e-21 105.9 227 34.8
SEGI_32999 Sequoiadendron giganteum HOM05D002206 ORTHO05D002219 9.7e-21 105.5 404 30.4
AUR62019496 Chenopodium quinoa HOM05D002206 ORTHO05D002219 2.4e-19 100.9 148 42.6
MBI18_g39090_MAGBIO Magnolia biondii HOM05D002206 ORTHO05D002219 9.1e-19 99.0 233 36.9
Nn2g11536 Nelumbo nucifera HOM05D002206 ORTHO05D002219 2.0e-18 97.8 229 34.1
Psat7g153640 Pisum sativum HOM05D002206 ORTHO05D002219 4.5e-18 96.7 72 70.8
Psat0s5922g0040 Pisum sativum HOM05D001675 ORTHO05D014085 1.0e-17 95.5 80 68.8
Nn2g13745 Nelumbo nucifera HOM05D002206 ORTHO05D002219 1.7e-17 94.7 229 34.5
Psat7g151640 Pisum sativum HOM05D002206 ORTHO05D002219 1.7e-17 94.7 80 68.8
Psat7g151680 Pisum sativum HOM05D002206 ORTHO05D002219 1.7e-17 94.7 80 68.8
SEGI_01955 Sequoiadendron giganteum HOM05D002206 ORTHO05D002219 2.9e-17 94.0 438 28.3
TAR623G1051 Trochodendron aralioides HOM05D002206 ORTHO05D002219 1.1e-16 92.0 233 33.0
Aqoxy7G01083 Aquilegia oxysepala HOM05D002206 ORTHO05D002219 4.7e-15 86.7 243 34.6
CDE05G0207 Ceratophyllum demersum HOM05D002206 ORTHO05D002219 2.6e-13 80.9 228 33.8
CSS0004700 Camellia sinensis var. sinensis HOM05D002206 ORTHO05D002219 4.8e-12 76.6 218 31.2
vmacro14416 Vaccinium macrocarpon HOM05D002206 ORTHO05D002219 2.0e-10 71.2 252 29.4
QL01p021039 Quercus lobata HOM05D002206 ORTHO05D002219 3.5e-10 70.5 265 30.2
Eucgr.J00905 Eucalyptus grandis HOM05D002206 ORTHO05D002219 7.7e-10 69.3 236 29.2
Actinidia37363 Actinidia chinensis HOM05D002206 ORTHO05D002219 1.1e-08 65.5 138 39.1
Rhsim01G0214800 Rhododendron simsii HOM05D002206 ORTHO05D002219 1.1e-08 65.5 254 26.4
Aqoxy1G01186 Aquilegia oxysepala HOM05D002206 ORTHO05D002219 3.2e-08 63.9 247 27.1
Pp3c2_20860 Physcomitrium patens HOM05D002206 ORTHO05D002219 5.5e-08 63.2 77 44.2
Pp3c1_19660 Physcomitrium patens HOM05D002206 ORTHO05D002219 1.6e-07 61.6 206 30.1
GSVIVG01025226001 Vitis vinifera HOM05D002206 ORTHO05D002219 2.7e-07 60.8 200 28.5
AagrBONN_evm.TU.Sc2ySwM_228.303 Anthoceros agrestis HOM05D002206 ORTHO05D002219 8.0e-07 59.3 65 50.8
BcaB05g24768 Brassica carinata HOM05D002206 ORTHO05D002219 1.0e-06 58.9 77 50.6
Mapoly0008s0016 Marchantia polymorpha HOM05D002206 ORTHO05D002219 1.0e-06 58.9 232 30.6


User provided reference genes

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