Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.HC0VLG Arachis hypogaea HOM05D004117 ORTHO05D004520 3.1e-134 481.9 254 100.0
arahy.Tifrunner.gnm1.ann1.A5IPPM Arachis hypogaea HOM05D004117 ORTHO05D004520 4.9e-31 139.0 74 100.0
arahy.Tifrunner.gnm1.ann1.X0GQC6 Arachis hypogaea HOM05D004117 ORTHO05D004520 4.9e-31 139.0 74 100.0
FAN14G3113 Fragaria x ananassa HOM05D004117 ORTHO05D004520 6.0e-29 132.1 83 85.5
FAN02G0254 Fragaria x ananassa HOM05D004117 ORTHO05D004520 1.3e-28 131.0 83 84.3
vmacro12419 Vaccinium macrocarpon HOM05D004117 ORTHO05D004520 2.3e-28 130.2 75 89.3
Nitab4.5_0005259g0030 Nicotiana tabacum HOM05D004117 ORTHO05D004520 3.3e-27 126.3 77 84.4
Sabra06G0216200 Salix brachista HOM05D004117 ORTHO05D004520 5.6e-27 125.6 80 85.0
MBI06_g18691_MAGBIO Magnolia biondii HOM05D004117 ORTHO05D004520 2.1e-26 123.6 75 84.0
SalBow7G1867 Salvia bowleyana HOM05D004117 ORTHO05D004520 2.8e-26 123.2 74 87.8
FAN09G0194 Fragaria x ananassa HOM05D004117 ORTHO05D004520 6.2e-26 122.1 76 86.8
Lalb_Chr15g0080421 Lupinus albus HOM05D004117 ORTHO05D004520 6.2e-26 122.1 75 90.7
RcHm_v2.0_Chr2g0131361 Rosa chinensis HOM05D004117 ORTHO05D004520 6.2e-26 122.1 76 86.8
Lj6g0002139 Lotus japonicus HOM05D004117 ORTHO05D004520 8.1e-26 121.7 68 97.1
Phvul.006G038200 Phaseolus vulgaris HOM05D004117 ORTHO05D004520 1.1e-25 121.3 76 86.8
SGA_v2.0_scaffold9G04867 Striga asiatica HOM05D004117 ORTHO05D004520 1.4e-25 120.9 74 86.5
FAN05G5128 Fragaria x ananassa HOM05D004117 ORTHO05D004520 1.8e-25 120.6 76 85.5
Glyma.18G102500 Glycine max HOM05D004117 ORTHO05D004520 1.8e-25 120.6 76 85.5
VMungo0540G1454 Vigna mungo HOM05D004117 ORTHO05D004520 1.8e-25 120.6 76 84.2
Medtr8g016090 Medicago truncatula HOM05D004117 ORTHO05D004520 3.1e-25 119.8 68 95.6
TPR.G22233 Trifolium pratense HOM05D004117 ORTHO05D004520 3.1e-25 119.8 68 95.6
ECA234G3208 Erigeron canadensis HOM05D004117 ORTHO05D004520 4.0e-25 119.4 100 64.0
MD09G1233800 Malus domestica HOM05D004117 ORTHO05D004520 5.2e-25 119.0 76 84.2
MD17G1230200 Malus domestica HOM05D004117 ORTHO05D004520 5.2e-25 119.0 76 84.2
Psat4g191560 Pisum sativum HOM05D004117 ORTHO05D004520 6.9e-25 118.6 68 94.1
Prupe.3G108900 Prunus persica HOM05D004117 ORTHO05D004520 6.9e-25 118.6 76 84.2
CSS0026162 Camellia sinensis var. sinensis HOM05D004117 ORTHO05D004520 8.9e-25 118.2 95 68.4
Nn3g21103 Nelumbo nucifera HOM05D004117 ORTHO05D004520 8.9e-25 118.2 92 71.7
arahy.Tifrunner.gnm1.ann1.EL27YX Arachis hypogaea HOM05D004117 ORTHO05D004520 1.5e-24 117.5 79 77.2
Lsat_1_v5_gn_5_110861 Lactuca sativa HOM05D002313 ORTHO05D004520 1.5e-24 117.5 75 78.7
Ah.01g004740 Amaranthus hybridus HOM05D004117 ORTHO05D004520 2.6e-24 116.7 80 76.2
arahy.Tifrunner.gnm1.ann1.S8R0TP Arachis hypogaea HOM05D004117 ORTHO05D004520 2.6e-24 116.7 79 77.2
Glyma.09G101300 Glycine max HOM05D004117 ORTHO05D004520 2.6e-24 116.7 76 82.9
TAR030G0002 Trochodendron aralioides HOM05D004117 ORTHO05D004520 2.6e-24 116.7 95 68.4
Actinidia11177 Actinidia chinensis HOM05D004117 ORTHO05D004520 4.4e-24 115.9 68 88.2
Sc21g0004310 Simmondsia chinensis HOM05D004117 ORTHO05D004520 4.4e-24 115.9 83 77.1
CiPaw.04G134900 Carya illinoinensis HOM05D004117 ORTHO05D004520 5.8e-24 115.5 76 78.9
Gohir.A11G059900 Gossypium hirsutum HOM05D004117 ORTHO05D004520 5.8e-24 115.5 78 79.5
HanXRQChr01g0028621 Helianthus annuus HOM05D004117 ORTHO05D004520 5.8e-24 115.5 76 78.9
Gohir.D11G064000 Gossypium hirsutum HOM05D004117 ORTHO05D004520 7.6e-24 115.2 78 78.2
Gorai.007G069200 Gossypium raimondii HOM05D004117 ORTHO05D004520 7.6e-24 115.2 78 78.2
Lsat_1_v5_gn_4_26681 Lactuca sativa HOM05D004117 ORTHO05D004520 7.6e-24 115.2 76 80.3
Lalb_Chr10g0106881 Lupinus albus HOM05D004117 ORTHO05D004520 9.9e-24 114.8 68 91.2
Rhsim06G0124300 Rhododendron simsii HOM05D004117 ORTHO05D004520 9.9e-24 114.8 76 80.3
Sed0017214 Sechium edule HOM05D004117 ORTHO05D004520 9.9e-24 114.8 75 84.0
HPP92_009031 Vanilla planifolia HOM05D004117 ORTHO05D004520 9.9e-24 114.8 77 76.6
Lj1C629G7 Lonicera japonica HOM05D004117 ORTHO05D004520 2.2e-23 113.6 92 66.3
Oeu032129.1 Olea europaea HOM05D004117 ORTHO05D004520 2.2e-23 113.6 69 85.5
Potri.006G278700 Populus trichocarpa HOM05D004117 ORTHO05D004520 2.2e-23 113.6 95 69.5
QL08p042899 Quercus lobata HOM05D004117 ORTHO05D004520 2.2e-23 113.6 68 85.3
arahy.Tifrunner.gnm1.ann1.AX0BTM Arachis hypogaea HOM05D004483 ORTHO05D005609 2.9e-23 113.2 77 85.7
Manes.01G129950 Manihot esculenta HOM05D004117 ORTHO05D004520 2.9e-23 113.2 68 88.2
BcaB02g06797 Brassica carinata HOM05D004117 ORTHO05D004520 3.8e-23 112.8 131 55.0
Zm00001eb270990 Zea mays HOM05D004117 ORTHO05D004520 3.8e-23 112.8 76 78.9
ClCG09G020800 Citrullus lanatus HOM05D004117 ORTHO05D004520 4.9e-23 112.5 75 81.3
DCAR_014033 Daucus carota HOM05D004117 ORTHO05D004520 4.9e-23 112.5 68 86.8
Duzib264G0691 Durio zibethinus HOM05D004117 ORTHO05D004520 4.9e-23 112.5 70 85.7
Thecc.01G156100 Theobroma cacao HOM05D004117 ORTHO05D004520 4.9e-23 112.5 70 85.7
Aqoxy1G01993 Aquilegia oxysepala HOM05D004117 ORTHO05D004520 6.4e-23 112.1 68 86.8
AL1G16480 Arabidopsis lyrata HOM05D004117 ORTHO05D004520 6.4e-23 112.1 107 62.6
AT1G06470 Arabidopsis thaliana HOM05D004117 ORTHO05D004520 6.4e-23 112.1 107 62.6
CANSAT64G1854 Cannabis sativa HOM05D004117 ORTHO05D004520 6.4e-23 112.1 68 88.2
Carub.0001s0583 Capsella rubella HOM05D004117 ORTHO05D004520 6.4e-23 112.1 107 62.6
Dinv03089 Davidia involucrata HOM05D004117 ORTHO05D004520 6.4e-23 112.1 76 77.6
Thhalv10007752m.g Eutrema salsugineum HOM05D004117 ORTHO05D004520 6.4e-23 112.1 107 62.6
THA.LOC104800830 Tarenaya hassleriana HOM05D004117 ORTHO05D004520 6.4e-23 112.1 68 89.7
Dinv11422 Davidia involucrata HOM05D004117 ORTHO05D004520 8.4e-23 111.7 68 85.3
GSVIVG01020780001 Vitis vinifera HOM05D004117 ORTHO05D004520 8.4e-23 111.7 68 85.3
Atru.chr6.3571 Acer truncatum HOM05D004117 ORTHO05D004520 1.1e-22 111.3 68 88.2
Aa31LG1G7530 Aethionema arabicum HOM05D004117 ORTHO05D004520 1.1e-22 111.3 88 71.6
CAN.G803.15 Capsicum annuum HOM05D004117 ORTHO05D004520 1.1e-22 111.3 68 86.8
CARHR006080 Cardamine hirsuta HOM05D004117 ORTHO05D004520 1.1e-22 111.3 107 59.8
Peaxi162Scf00154g01022 Petunia axillaris HOM05D004117 ORTHO05D004520 1.1e-22 111.3 68 86.8
Solyc07g055700.2 Solanum lycopersicum HOM05D004117 ORTHO05D004520 1.1e-22 111.3 68 86.8
Sopen07g029060 Solanum pennellii HOM05D004117 ORTHO05D004520 1.1e-22 111.3 68 86.8
SGA_v2.0_scaffold46G17443 Striga asiatica HOM05D004117 ORTHO05D004520 1.1e-22 111.3 68 89.7
Nn6g34497 Nelumbo nucifera HOM05D004117 ORTHO05D004520 1.4e-22 110.9 68 85.3
Oeu028661.1 Olea europaea HOM05D004117 ORTHO05D004520 1.4e-22 110.9 68 86.8
Migut.H02117 Erythranthe guttata HOM05D004117 ORTHO05D004520 1.9e-22 110.5 68 88.2
Sp1g05230 Schrenkiella parvula HOM05D004117 ORTHO05D004520 1.9e-22 110.5 107 61.7
CsaV3_6G037880 Cucumis sativus L. HOM05D004117 ORTHO05D004520 2.4e-22 110.2 75 78.7
Duzib147G1030 Durio zibethinus HOM05D004117 ORTHO05D004520 2.4e-22 110.2 70 84.3
ECA233G4030 Erigeron canadensis HOM05D004117 ORTHO05D004520 2.4e-22 110.2 68 85.3
AUR62031790 Chenopodium quinoa HOM05D004117 ORTHO05D004520 3.2e-22 109.8 70 82.9
PSO541G2160 Papaver somniferum HOM05D004117 ORTHO05D004520 3.2e-22 109.8 68 85.3
Zm00001eb376680 Zea mays HOM05D004117 ORTHO05D004520 3.2e-22 109.8 76 77.6
Migut.M00208 Erythranthe guttata HOM05D004117 ORTHO05D004520 4.2e-22 109.4 68 85.3
PSO675G6070 Papaver somniferum HOM05D004117 ORTHO05D004520 4.2e-22 109.4 68 83.8
Gohir.D04G039266 Gossypium hirsutum HOM05D004117 ORTHO05D004520 5.4e-22 109.0 70 82.9
Gorai.012G044300 Gossypium raimondii HOM05D004117 ORTHO05D004520 5.4e-22 109.0 70 82.9
HanXRQChr12g0367511 Helianthus annuus HOM05D004117 ORTHO05D004520 5.4e-22 109.0 68 83.8
Hma1.2p1_0178F.1_g078380 Hydrangea macrophylla HOM05D004117 ORTHO05D004520 5.4e-22 109.0 68 83.8
Lsat_1_v5_gn_8_31821 Lactuca sativa HOM05D004117 ORTHO05D004520 5.4e-22 109.0 68 82.4
Solyc12g010990.3 Solanum lycopersicum HOM05D004117 ORTHO05D004520 5.4e-22 109.0 68 86.8
Sopen12g006350 Solanum pennellii HOM05D004117 ORTHO05D004520 5.4e-22 109.0 68 86.8
A08p35950 Brassica napus HOM05D004117 ORTHO05D004520 7.1e-22 108.6 107 59.8
CDE09G0584 Ceratophyllum demersum HOM05D004117 ORTHO05D004520 7.1e-22 108.6 81 72.8
DCAR_010149 Daucus carota HOM05D004117 ORTHO05D004520 7.1e-22 108.6 68 82.4
Gohir.A05G376700 Gossypium hirsutum HOM05D004117 ORTHO05D004520 7.1e-22 108.6 70 82.9
EL10Ac9g21032 Beta vulgaris HOM05D004117 ORTHO05D004520 9.3e-22 108.2 68 83.8
CAN.G486.15 Capsicum annuum HOM05D004117 ORTHO05D004520 9.3e-22 108.2 92 67.4
HPP92_000571 Vanilla planifolia HOM05D004117 ORTHO05D004520 1.2e-21 107.8 68 82.4
Peaxi162Scf00807g00047 Petunia axillaris HOM05D004117 ORTHO05D004520 1.6e-21 107.5 68 85.3
BcaB03g13416 Brassica carinata HOM05D004117 ORTHO05D004520 2.1e-21 107.1 107 59.8
A10p05130 Brassica napus HOM05D004117 ORTHO05D004520 2.1e-21 107.1 107 59.8
C05p04720 Brassica napus HOM05D004117 ORTHO05D004520 2.1e-21 107.1 107 59.8
BolC5t29244H Brassica oleracea HOM05D004117 ORTHO05D004520 2.1e-21 107.1 107 59.8
BolC8t47054H Brassica oleracea HOM05D004117 ORTHO05D004520 2.1e-21 107.1 107 59.8
BraA10t42778Z Brassica rapa HOM05D004117 ORTHO05D004520 2.1e-21 107.1 107 59.8
SalBow7G2879 Salvia bowleyana HOM05D004117 ORTHO05D004520 2.1e-21 107.1 68 85.3
Manes.02G087500 Manihot esculenta HOM05D004117 ORTHO05D004520 2.7e-21 106.7 68 82.4
Sc12g0003810 Simmondsia chinensis HOM05D004117 ORTHO05D004520 3.5e-21 106.3 68 83.8
Ah.01g016090 Amaranthus hybridus HOM05D004117 ORTHO05D004520 4.6e-21 105.9 76 73.7
SMO358G0570 Selaginella moellendorffii HOM05D004117 ORTHO05D004520 4.6e-21 105.9 107 54.2
C08p02610 Brassica napus HOM05D004117 ORTHO05D004520 6.0e-21 105.5 107 58.9
PGR042G1715 Punica granatum HOM05D004117 ORTHO05D004520 6.0e-21 105.5 68 85.3
unitig_62.g23112 Utricularia gibba HOM05D004117 ORTHO05D004520 1.7e-20 104.0 66 83.3
BcaC07g36812 Brassica carinata HOM05D004117 ORTHO05D004520 3.0e-20 103.2 68 79.4
Os01g0749900 Oryza sativa ssp. japonica HOM05D004117 ORTHO05D004520 3.9e-20 102.8 68 76.5
BraA08t35503Z Brassica rapa HOM05D004117 ORTHO05D004520 1.1e-19 101.3 115 55.7
Mapoly0038s0060 Marchantia polymorpha HOM05D004117 ORTHO05D004520 1.5e-19 100.9 95 54.7
Zm00001eb370980 Zea mays HOM05D004117 ORTHO05D004520 1.5e-19 100.9 68 75.0
arahy.Tifrunner.gnm1.ann1.KE4T51 Arachis hypogaea HOM05D000129 ORTHO05D000144 2.5e-19 100.1 59 79.7
arahy.Tifrunner.gnm1.ann1.WPXT30 Arachis hypogaea HOM05D000129 ORTHO05D000144 2.5e-19 100.1 59 79.7
Pp3c3_5740 Physcomitrium patens HOM05D004117 ORTHO05D004520 2.5e-19 100.1 78 69.2
Hund07729 Selenicereus undatus HOM05D004117 ORTHO05D004520 9.6e-19 98.2 82 69.5
Pp3c2_29630 Physcomitrium patens HOM05D004117 ORTHO05D004520 1.8e-17 94.0 68 70.6
COL.COLO4_33652 Corchorus olitorius HOM05D004117 ORTHO05D004520 3.1e-17 93.2 109 55.0
Nitab4.5_0003133g0050 Nicotiana tabacum HOM05D004117 ORTHO05D004520 3.1e-17 93.2 78 66.7
arahy.Tifrunner.gnm1.ann1.FHX6WZ Arachis hypogaea HOM05D000677 ORTHO05D000727 2.6e-16 90.1 110 60.0
arahy.Tifrunner.gnm1.ann1.VYP3BN Arachis hypogaea HOM05D002048 ORTHO05D002146 4.5e-16 89.4 65 81.5
arahy.Tifrunner.gnm1.ann1.0U8Z8Z Arachis hypogaea HOM05D000002 ORTHO05D023301 1.7e-15 87.4 72 73.6
arahy.Tifrunner.gnm1.ann1.J381VT Arachis hypogaea HOM05D001003 ORTHO05D003884 1.4e-14 84.3 64 78.1
arahy.Tifrunner.gnm1.ann1.D1D3TT Arachis hypogaea HOM05D002048 ORTHO05D004520 1.9e-14 84.0 65 78.5
arahy.Tifrunner.gnm1.ann1.F96EFF Arachis hypogaea HOM05D003444 ORTHO05D008505 1.9e-14 84.0 69 78.3
Zm00001eb317340 Zea mays HOM05D004117 ORTHO05D004520 4.2e-14 82.8 48 89.6
Zm00001eb358520 Zea mays HOM05D004117 ORTHO05D004520 9.3e-14 81.6 48 87.5
BcaC07g36811 Brassica carinata HOM05D004117 ORTHO05D004520 1.8e-12 77.4 105 47.6
FvH4_6g27881 Fragaria vesca HOM05D004117 ORTHO05D004520 1.1e-11 74.7 48 81.2
Ciclev10017482m.g Citrus clementina HOM05D004117 ORTHO05D004520 1.5e-11 74.3 45 86.7
arahy.Tifrunner.gnm1.ann1.PX7MES Arachis hypogaea HOM05D004117 ORTHO05D004520 1.9e-11 73.9 44 95.5
PRCOL_00002587 Prasinoderma coloniale HOM05D004117 ORTHO05D004520 5.6e-11 72.4 68 52.9
arahy.Tifrunner.gnm1.ann1.E1YPH0 Arachis hypogaea HOM05D004117 ORTHO05D004520 7.4e-11 72.0 107 44.9
Eucgr.A01947 Eucalyptus grandis HOM05D004117 ORTHO05D004520 3.6e-10 69.7 69 66.7
arahy.Tifrunner.gnm1.ann1.N5266S Arachis hypogaea HOM05D004117 ORTHO05D004520 6.2e-10 68.9 39 94.9
Cre07.g330850 Chlamydomonas reinhardtii HOM05D004117 ORTHO05D004520 1.4e-09 67.8 67 49.3
arahy.Tifrunner.gnm1.ann1.DV27UL Arachis hypogaea HOM05D000512 ORTHO05D002146 2.2e-07 60.5 60 63.3
PGSC0003DMG400007799 Solanum tuberosum HOM05D004117 ORTHO05D004520 5.5e-06 55.8 70 52.9


User provided reference genes

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