Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.HAYR03 Arachis hypogaea HOM05D004073 ORTHO05D004785 7.8e-183 643.7 323 100.0
arahy.Tifrunner.gnm1.ann1.F1PCFU Arachis hypogaea HOM05D004073 ORTHO05D004785 2.9e-177 625.2 330 94.8
Lalb_Chr15g0083341 Lupinus albus HOM05D004073 ORTHO05D004785 2.1e-119 433.0 328 69.2
Lj6g0025058 Lotus japonicus HOM05D004073 ORTHO05D004785 3.7e-116 422.2 320 67.5
Lj2g0012663 Lotus japonicus HOM05D004073 ORTHO05D004785 1.2e-114 417.2 320 67.2
Medtr4g055190 Medicago truncatula HOM05D004073 ORTHO05D004785 1.0e-105 387.5 324 62.3
Ca_19377_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 2.5e-104 382.9 323 62.2
Psat7g190200 Pisum sativum HOM05D004073 ORTHO05D004785 1.2e-101 374.0 327 61.2
Phvul.006G074800 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 1.7e-100 370.2 324 61.7
arahy.Tifrunner.gnm1.ann1.9SIV6F Arachis hypogaea HOM05D004073 ORTHO05D004785 2.6e-93 346.3 332 58.4
Lj3g0026799 Lotus japonicus HOM05D004073 ORTHO05D004785 4.4e-93 345.5 328 56.4
arahy.Tifrunner.gnm1.ann1.AHDC81 Arachis hypogaea HOM05D004073 ORTHO05D004785 2.2e-92 343.2 332 57.5
QL08p004797 Quercus lobata HOM05D004073 ORTHO05D004785 2.2e-92 343.2 329 57.4
Ca_04178_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 1.2e-90 337.4 325 56.9
CiPaw.01G209600 Carya illinoinensis HOM05D004073 ORTHO05D004785 1.6e-90 337.0 327 56.9
Cfa002798 Carpinus fangiana HOM05D004073 ORTHO05D004785 5.9e-90 335.1 327 55.0
Ciclev10008892m.g Citrus clementina HOM05D004073 ORTHO05D004785 5.0e-89 332.0 326 54.9
Lalb_Chr01g0018421 Lupinus albus HOM05D004073 ORTHO05D004785 5.0e-89 332.0 331 56.5
CiPaw.02G129700 Carya illinoinensis HOM05D004073 ORTHO05D004785 5.5e-88 328.6 328 54.3
Haze_25099 Corylus avellana HOM05D004073 ORTHO05D004785 7.2e-88 328.2 327 54.1
ClCG09G021180 Citrullus lanatus HOM05D004073 ORTHO05D004785 3.0e-86 322.8 325 54.8
MELO3C024919.2 Cucumis melo HOM05D004073 ORTHO05D004785 6.8e-86 321.6 325 54.2
Prupe.4G240000 Prunus persica HOM05D004073 ORTHO05D004785 8.9e-86 321.2 324 55.6
Phvul.004G069300 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 1.5e-85 320.5 332 52.1
Hma1.2p1_0036F.1_g022540 Hydrangea macrophylla HOM05D004073 ORTHO05D004785 2.0e-85 320.1 331 53.8
GSVIVG01014646001 Vitis vinifera HOM05D004073 ORTHO05D004785 2.0e-85 320.1 329 54.7
Manes.03G140000 Manihot esculenta HOM05D004073 ORTHO05D004785 5.7e-85 318.5 325 54.2
Glyma.16G148100 Glycine max HOM05D004073 ORTHO05D004785 9.8e-85 317.8 331 52.9
Duzib213G1048 Durio zibethinus HOM05D004073 ORTHO05D004785 3.7e-84 315.8 327 53.5
Medtr4g086170 Medicago truncatula HOM05D004073 ORTHO05D004785 3.7e-84 315.8 333 54.4
Cc02_g24500 Coffea canephora HOM05D004073 ORTHO05D004785 6.3e-84 315.1 330 53.0
Dinv10322 Davidia involucrata HOM05D004073 ORTHO05D004785 8.3e-84 314.7 329 53.8
VMungo0464G1872 Vigna mungo HOM05D004073 ORTHO05D004785 8.3e-84 314.7 329 52.3
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 1.8e-83 313.5 246 66.7
Potri.001G366000 Populus trichocarpa HOM05D004073 ORTHO05D004785 1.2e-82 310.8 327 55.0
Peaxi162Scf00529g00814 Petunia axillaris HOM05D004073 ORTHO05D004785 2.7e-82 309.7 330 53.3
RcHm_v2.0_Chr5g0053951 Rosa chinensis HOM05D004073 ORTHO05D004785 2.7e-82 309.7 329 52.6
TWI39G0963 Tripterygium wilfordii HOM05D004073 ORTHO05D004785 2.7e-82 309.7 325 52.9
MD11G1201600 Malus domestica HOM05D004073 ORTHO05D004785 5.9e-82 308.5 326 52.8
MD00G1099100 Malus domestica HOM05D004073 ORTHO05D004785 1.0e-81 307.8 326 52.1
Sed0026445 Sechium edule HOM05D004073 ORTHO05D004785 1.7e-81 307.0 326 51.5
Sc03g0011140 Simmondsia chinensis HOM05D004073 ORTHO05D004785 1.7e-81 307.0 331 52.6
Glyma.02G067000 Glycine max HOM05D004073 ORTHO05D004785 2.9e-81 306.2 332 51.8
Nitab4.5_0000276g0150 Nicotiana tabacum HOM05D004073 ORTHO05D004785 2.9e-81 306.2 330 53.6
Gohir.A13G133800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 6.6e-81 305.1 336 51.5
Gohir.A01G090300 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.1e-80 304.3 327 51.7
Sed0023598 Sechium edule HOM05D004073 ORTHO05D004785 1.1e-80 304.3 327 50.8
Solyc04g056610.3 Solanum lycopersicum HOM05D004073 ORTHO05D004785 1.1e-80 304.3 330 52.4
MSTRG.20573 Avicennia marina HOM05D004073 ORTHO05D004785 1.5e-80 303.9 329 52.9
Sabra16G0239500 Salix brachista HOM05D004073 ORTHO05D004785 2.5e-80 303.1 327 54.4
TAR629G1249 Trochodendron aralioides HOM05D004073 ORTHO05D004785 2.5e-80 303.1 328 52.1
Sopen04g025530 Solanum pennellii HOM05D004073 ORTHO05D004785 3.3e-80 302.8 330 52.1
Thecc.07G016400 Theobroma cacao HOM05D004073 ORTHO05D004785 3.3e-80 302.8 327 51.4
MBI16_g14388_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 7.3e-80 301.6 334 53.0
Nitab4.5_0000083g0020 Nicotiana tabacum HOM05D004073 ORTHO05D004785 9.5e-80 301.2 330 52.7
CSS0000121 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 1.6e-79 300.4 330 50.9
Gorai.002G098800 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.6e-79 300.4 327 51.1
Gorai.013G153800 Gossypium raimondii HOM05D004073 ORTHO05D004785 2.8e-79 299.7 336 50.6
Manes.15G061500 Manihot esculenta HOM05D004073 ORTHO05D004785 2.8e-79 299.7 325 52.0
Duzib170G0711 Durio zibethinus HOM05D004073 ORTHO05D004785 4.7e-79 298.9 328 50.9
PGSC0003DMG400010530 Solanum tuberosum HOM05D004073 ORTHO05D004785 4.7e-79 298.9 330 52.1
CAN.G217.4 Capsicum annuum HOM05D004073 ORTHO05D004785 8.0e-79 298.1 332 53.3
Medtr6g005540 Medicago truncatula HOM05D004073 ORTHO05D004785 8.0e-79 298.1 347 51.6
Rhsim04G0013700 Rhododendron simsii HOM05D004073 ORTHO05D004785 2.3e-78 296.6 330 52.1
CANSAT01G2739 Cannabis sativa HOM05D004073 ORTHO05D004785 3.0e-78 296.2 330 51.5
TAR629G1509 Trochodendron aralioides HOM05D004073 ORTHO05D004785 3.0e-78 296.2 329 52.9
Gohir.D01G075600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 4.0e-78 295.8 326 50.6
CSS0032183 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 5.2e-78 295.4 331 52.3
FAN25G0469 Fragaria x ananassa HOM05D004073 ORTHO05D004785 5.2e-78 295.4 319 50.2
Psat1g055880 Pisum sativum HOM05D004073 ORTHO05D004785 1.2e-77 294.3 329 51.7
PGSC0003DMG400003290 Solanum tuberosum HOM05D004073 ORTHO05D004785 5.7e-77 292.0 329 50.8
Lj1A888G37 Lonicera japonica HOM05D004073 ORTHO05D004785 9.8e-77 291.2 274 56.9
FAN11G2481 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.3e-76 290.8 322 50.9
RcHm_v2.0_Chr5g0077271 Rosa chinensis HOM05D004073 ORTHO05D004785 1.3e-76 290.8 326 50.0
Lsat_1_v5_gn_5_1501 Lactuca sativa HOM05D004073 ORTHO05D004785 2.9e-76 289.7 328 51.5
Migut.B01283 Erythranthe guttata HOM05D004073 ORTHO05D004785 3.7e-76 289.3 331 49.8
Eucgr.F02061 Eucalyptus grandis HOM05D004073 ORTHO05D004785 4.9e-76 288.9 325 49.8
FAN21G2863 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.4e-75 287.3 323 49.8
PGR083G0661 Punica granatum HOM05D004073 ORTHO05D004785 1.4e-75 287.3 333 50.2
FvH4_3g29460 Fragaria vesca HOM05D004073 ORTHO05D004785 4.1e-75 285.8 324 50.3
HanXRQChr07g0195741 Helianthus annuus HOM05D004073 ORTHO05D004785 7.0e-75 285.0 331 51.4
Gohir.D13G137200 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.2e-74 284.3 330 50.0
CSS0006286 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 2.7e-74 283.1 271 55.4
HanXRQChr05g0159911 Helianthus annuus HOM05D004073 ORTHO05D004785 6.0e-74 282.0 330 49.1
Lj8A177T32 Lonicera japonica HOM05D004073 ORTHO05D004785 7.8e-74 281.6 288 54.5
CDE06G2507 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 1.0e-73 281.2 329 47.7
PSO302G0019 Papaver somniferum HOM05D004073 ORTHO05D004785 2.3e-73 280.0 326 50.6
TPR.G8724 Trifolium pratense HOM05D004073 ORTHO05D004785 5.0e-73 278.9 326 50.3
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 2.5e-72 276.6 388 43.3
Hund01907 Selenicereus undatus HOM05D004073 ORTHO05D004785 9.5e-72 274.6 336 48.5
PSO210G1542 Papaver somniferum HOM05D004073 ORTHO05D004785 2.1e-71 273.5 328 49.4
SalBow6G4871 Salvia bowleyana HOM05D004073 ORTHO05D004785 3.6e-71 272.7 319 49.2
Hund23121 Selenicereus undatus HOM05D004073 ORTHO05D004785 4.7e-71 272.3 336 49.7
AT5G55610 Arabidopsis thaliana HOM05D004073 ORTHO05D004785 8.0e-71 271.6 328 48.5
THA.LOC104817703 Tarenaya hassleriana HOM05D004073 ORTHO05D004785 1.1e-70 271.2 333 48.0
SGA_v2.0_scaffold119G32745 Striga asiatica HOM05D004073 ORTHO05D004785 5.2e-70 268.9 355 47.6
BcaC04g20215 Brassica carinata HOM05D004073 ORTHO05D004785 1.5e-69 267.3 329 47.4
C09p46590 Brassica napus HOM05D004073 ORTHO05D004785 1.5e-69 267.3 329 47.4
BolC9t57510H Brassica oleracea HOM05D004073 ORTHO05D004785 1.5e-69 267.3 329 47.4
unitig_26.g10112 Utricularia gibba HOM05D004073 ORTHO05D004785 5.8e-69 265.4 326 48.2
vmacro09656 Vaccinium macrocarpon HOM05D004073 ORTHO05D004785 5.8e-69 265.4 368 45.9
EL10Ac4g07603 Beta vulgaris HOM05D004073 ORTHO05D004785 9.8e-69 264.6 336 47.0
SalBow3G0415 Salvia bowleyana HOM05D004073 ORTHO05D004785 2.2e-68 263.5 333 47.4
AUR62017071 Chenopodium quinoa HOM05D004073 ORTHO05D004785 1.4e-67 260.8 339 46.6
CsaV3_7G018320 Cucumis sativus L. HOM05D004073 ORTHO05D004785 2.4e-67 260.0 214 61.7
Carub.0008s1598 Capsella rubella HOM05D004073 ORTHO05D004785 3.2e-67 259.6 326 46.0
CARHR268920 Cardamine hirsuta HOM05D004073 ORTHO05D004785 7.0e-67 258.5 329 45.6
AUR62036423 Chenopodium quinoa HOM05D004073 ORTHO05D004785 2.0e-66 256.9 339 45.7
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 2.0e-66 256.9 329 48.3
AUR62036429 Chenopodium quinoa HOM05D004073 ORTHO05D004785 4.6e-66 255.8 339 45.4
Ah.06g181300 Amaranthus hybridus HOM05D004073 ORTHO05D004785 7.8e-66 255.0 328 46.0
COL.COLO4_09810 Corchorus olitorius HOM05D004073 ORTHO05D004785 7.8e-66 255.0 274 51.8
A10p12860 Brassica napus HOM05D004073 ORTHO05D004785 3.9e-65 252.7 330 46.1
BraA10t43379Z Brassica rapa HOM05D004073 ORTHO05D004785 3.9e-65 252.7 330 46.1
CDE04G2763 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 8.6e-65 251.5 311 48.2
BcaB08g35921 Brassica carinata HOM05D004073 ORTHO05D004785 1.2e-63 247.7 328 45.1
ATR1126G058 Amborella trichopoda HOM05D004073 ORTHO05D004785 2.8e-63 246.5 330 45.8
Thhalv10014039m.g Eutrema salsugineum HOM05D004073 ORTHO05D004785 1.1e-62 244.6 335 44.2
AL8G31180 Arabidopsis lyrata HOM05D004073 ORTHO05D004785 4.0e-62 242.7 326 43.3
Sp6g17530 Schrenkiella parvula HOM05D004073 ORTHO05D004785 5.8e-61 238.8 330 44.2
Aa31LG3G11560 Aethionema arabicum HOM05D004073 ORTHO05D004785 9.9e-61 238.0 371 40.7
Aqoxy5G03484 Aquilegia oxysepala HOM05D004073 ORTHO05D004785 2.2e-60 236.9 327 47.1
Dinv40845 Davidia involucrata HOM05D004073 ORTHO05D004785 1.1e-59 234.6 248 53.6
A02p09590 Brassica napus HOM05D004073 ORTHO05D004785 7.8e-58 228.4 340 43.8
Nn1g07482 Nelumbo nucifera HOM05D004073 ORTHO05D004785 1.0e-57 228.0 246 51.2
C02p15980 Brassica napus HOM05D004073 ORTHO05D004785 3.0e-57 226.5 340 44.1
ECA240G0169 Erigeron canadensis HOM05D004073 ORTHO05D004785 3.0e-57 226.5 281 46.3
BraA02t06023Z Brassica rapa HOM05D004073 ORTHO05D004785 5.1e-57 225.7 340 43.5
Cpa.g.sc12.171 Carica papaya HOM05D004073 ORTHO05D004785 4.0e-54 216.1 336 41.1
Os12g0498800 Oryza sativa ssp. japonica HOM05D004073 ORTHO05D004785 4.0e-54 216.1 334 43.7
BolC2t07705H Brassica oleracea HOM05D004073 ORTHO05D004785 1.5e-53 214.2 369 40.7
Actinidia35391 Actinidia chinensis HOM05D004073 ORTHO05D004785 3.2e-51 206.5 170 60.6
HPP92_020483 Vanilla planifolia HOM05D004073 ORTHO05D004785 5.4e-51 205.7 321 42.7
Haze_03265 Corylus avellana HOM05D004073 ORTHO05D004785 1.0e-49 201.4 236 48.7
arahy.Tifrunner.gnm1.ann1.0WG7ZM Arachis hypogaea HOM05D004073 ORTHO05D004785 6.6e-49 198.7 159 62.9
CANSAT01G1348 Cannabis sativa HOM05D004073 ORTHO05D004785 2.5e-48 196.8 309 43.7
ECA246G0082 Erigeron canadensis HOM05D004073 ORTHO05D004785 2.5e-48 196.8 313 43.1
arahy.Tifrunner.gnm1.ann1.W5ZFFA Arachis hypogaea HOM05D004073 ORTHO05D004785 6.2e-47 192.2 159 61.0
BcaB05g22217 Brassica carinata HOM05D004073 ORTHO05D004785 1.2e-45 188.0 293 41.3
Mapoly0030s0146 Marchantia polymorpha HOM05D004073 ORTHO05D004785 4.4e-45 186.0 239 45.6
MD00G1008300 Malus domestica HOM05D004073 ORTHO05D004785 1.7e-44 184.1 256 41.4
Pp3c17_1290 Physcomitrium patens HOM05D004073 ORTHO05D004785 1.9e-43 180.6 299 40.8
TPR.G15593 Trifolium pratense HOM05D004073 ORTHO05D004785 1.0e-41 174.9 325 38.2
Pp3c12_2880 Physcomitrium patens HOM05D004073 ORTHO05D004785 2.3e-41 173.7 298 39.6
TPR.G31066 Trifolium pratense HOM05D004073 ORTHO05D004785 3.0e-41 173.3 144 61.8
Atru.chr2.3668 Acer truncatum HOM05D004073 ORTHO05D004785 1.1e-40 171.4 168 54.8
AagrBONN_evm.TU.Sc2ySwM_117.3546 Anthoceros agrestis HOM05D004073 ORTHO05D004785 1.9e-40 170.6 286 38.5
Gohir.D06G153600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 5.6e-40 169.1 203 49.8
Gorai.013G151000 Gossypium raimondii HOM05D004073 ORTHO05D004785 5.6e-40 169.1 203 48.8
Gorai.002G215300 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.3e-39 167.9 203 49.3
Nn1g03214 Nelumbo nucifera HOM05D004073 ORTHO05D004785 6.2e-39 165.6 218 46.3
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 1.5e-37 161.0 276 39.1
Gorai.010G179600 Gossypium raimondii HOM05D004073 ORTHO05D004785 5.1e-33 146.0 170 48.2
MBI16_g14390_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 3.3e-32 143.3 145 52.4
MBI16_g43434_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 9.9e-29 131.7 120 55.8
SEGI_22606 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 1.9e-24 117.5 199 40.2
SEGI_11688 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 2.5e-24 117.1 123 48.8
Gohir.A04G002800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 2.1e-23 114.0 133 48.1
Medtr4g055205 Medicago truncatula HOM05D004073 ORTHO05D004785 3.7e-23 113.2 99 57.6
TAR626G1493 Trochodendron aralioides HOM05D004073 ORTHO05D004785 4.0e-22 109.8 142 46.5
Actinidia37162 Actinidia chinensis HOM05D004073 ORTHO05D004785 6.9e-22 109.0 147 47.6
Zm00001eb409570 Zea mays HOM05D004073 ORTHO05D004785 5.5e-19 99.4 211 37.0
CBR_g33924 Chara braunii HOM05D004073 ORTHO05D004785 3.7e-15 86.7 227 30.8
Thecc.07G016200 Theobroma cacao HOM05D004073 ORTHO05D004785 6.9e-14 82.4 102 45.1
PGSC0003DMG401021129 Solanum tuberosum HOM05D004073 ORTHO05D004785 5.0e-12 76.3 51 70.6
HPP92_020450 Vanilla planifolia HOM05D004073 ORTHO05D004785 3.6e-10 70.1 92 44.6
GSVIVG01014652001 Vitis vinifera HOM05D004073 ORTHO05D004785 1.8e-09 67.8 55 58.2
MBI19_g20151_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 7.4e-08 62.4 140 32.1
PRCOL_00005800 Prasinoderma coloniale HOM05D004073 ORTHO05D004785 2.2e-07 60.8 153 32.0
VMungo1127G1263 Vigna mungo HOM05D004073 ORTHO05D004785 2.4e-06 57.4 36 69.4


User provided reference genes

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