Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.H9PZRL Arachis hypogaea HOM05D005306 ORTHO05D006158 1.1e-187 659.8 335 100.0
arahy.Tifrunner.gnm1.ann1.U0X1YR Arachis hypogaea HOM05D005306 ORTHO05D006158 1.2e-183 646.4 335 98.2
Lj4g0005197 Lotus japonicus HOM05D005306 ORTHO05D006158 3.6e-66 256.1 315 50.8
Lalb_Chr13g0296051 Lupinus albus HOM05D005306 ORTHO05D006158 4.7e-58 229.2 343 44.0
VMungo0251G2777 Vigna mungo HOM05D005306 ORTHO05D006158 2.6e-56 223.4 340 44.7
Medtr8g090365 Medicago truncatula HOM05D005306 ORTHO05D006158 9.9e-56 221.5 340 44.7
Lalb_Chr07g0185101 Lupinus albus HOM05D005306 ORTHO05D006158 4.9e-55 219.2 337 43.9
Ca_17725_v3 Cicer arietinum L. HOM05D005306 ORTHO05D006158 7.1e-54 215.3 340 44.4
Phvul.002G254400 Phaseolus vulgaris HOM05D005306 ORTHO05D006158 1.2e-53 214.5 328 43.9
Psat7g054080 Pisum sativum HOM05D005306 ORTHO05D006158 4.6e-53 212.6 345 43.8
TPR.G2173 Trifolium pratense HOM05D005306 ORTHO05D006158 2.1e-45 187.2 342 41.5
Lj4A885T20 Lonicera japonica HOM05D005306 ORTHO05D006158 2.5e-43 180.3 345 38.3
Ciclev10025982m.g Citrus clementina HOM05D005306 ORTHO05D006158 4.0e-41 172.9 361 36.6
Sed0001570 Sechium edule HOM05D005306 ORTHO05D006158 1.9e-38 164.1 358 36.0
MELO3C007770.2 Cucumis melo HOM05D005306 ORTHO05D006158 2.4e-38 163.7 362 37.0
QL06p049976 Quercus lobata HOM05D005306 ORTHO05D006158 9.3e-38 161.8 374 35.0
Dinv21926 Davidia involucrata HOM05D005306 ORTHO05D006158 1.2e-37 161.4 355 35.5
TWI77G0207 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 1.2e-37 161.4 356 34.6
Gohir.A11G052900 Gossypium hirsutum HOM05D005306 ORTHO05D006158 4.6e-37 159.5 322 36.0
CiPaw.04G097600 Carya illinoinensis HOM05D005306 ORTHO05D006158 7.9e-37 158.7 371 34.2
CsaV3_6G045590 Cucumis sativus L. HOM05D005306 ORTHO05D006158 1.0e-36 158.3 359 36.5
Potri.007G090500 Populus trichocarpa HOM05D005306 ORTHO05D006158 2.3e-36 157.1 350 36.0
Gorai.007G061500 Gossypium raimondii HOM05D005306 ORTHO05D006158 5.1e-36 156.0 330 35.5
ClCG01G018910 Citrullus lanatus HOM05D005306 ORTHO05D006158 1.1e-35 154.8 359 35.7
Gohir.D12G096600 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.1e-35 154.8 324 35.5
Gorai.008G104700 Gossypium raimondii HOM05D005306 ORTHO05D006158 1.1e-35 154.8 324 35.5
Atru.chr4.126 Acer truncatum HOM05D005306 ORTHO05D006158 1.9e-35 154.1 376 35.9
Gohir.A12G079125 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.9e-35 154.1 326 34.7
Manes.12G136900 Manihot esculenta HOM05D005306 ORTHO05D006158 2.5e-35 153.7 373 35.7
Sabra07G0074200 Salix brachista HOM05D005306 ORTHO05D006158 2.5e-35 153.7 352 36.1
Thecc.01G104400 Theobroma cacao HOM05D005306 ORTHO05D006158 3.3e-35 153.3 314 36.0
Hund13638 Selenicereus undatus HOM05D005306 ORTHO05D006158 4.3e-35 152.9 184 46.7
Glyma.08G137700 Glycine max HOM05D005306 ORTHO05D006158 5.6e-35 152.5 344 36.3
Cfa002685 Carpinus fangiana HOM05D005306 ORTHO05D006158 7.4e-35 152.1 367 33.0
TAR625G0717 Trochodendron aralioides HOM05D005306 ORTHO05D006158 6.2e-34 149.1 383 33.2
Prupe.6G182000 Prunus persica HOM05D005306 ORTHO05D006158 1.1e-33 148.3 375 31.7
Dinv16302 Davidia involucrata HOM05D005306 ORTHO05D006158 1.4e-33 147.9 355 36.3
Haze_24956 Corylus avellana HOM05D005306 ORTHO05D006158 1.8e-33 147.5 397 31.5
CiPaw.03G140300 Carya illinoinensis HOM05D005306 ORTHO05D006158 3.1e-33 146.7 193 44.6
Actinidia36600 Actinidia chinensis HOM05D005306 ORTHO05D006158 6.9e-33 145.6 366 32.5
CSS0034809 Camellia sinensis var. sinensis HOM05D005306 ORTHO05D006158 6.9e-33 145.6 355 35.8
QL04p017893 Quercus lobata HOM05D005306 ORTHO05D006158 9.0e-33 145.2 385 33.8
COL.COLO4_09939 Corchorus olitorius HOM05D005306 ORTHO05D006158 1.5e-32 144.4 326 36.2
Gohir.D11G056300 Gossypium hirsutum HOM05D005306 ORTHO05D006158 2.6e-32 143.7 304 36.5
TWI53G1353 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 5.8e-32 142.5 352 32.4
Duzib147G0288 Durio zibethinus HOM05D005306 ORTHO05D006158 1.0e-31 141.7 169 47.3
Potri.005G077400 Populus trichocarpa HOM05D005306 ORTHO05D006158 1.3e-31 141.4 353 33.7
THA.LOC104819305 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 1.7e-31 141.0 338 32.5
Thhalv10014214m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 2.9e-31 140.2 327 32.7
GSVIVG01004251001 Vitis vinifera HOM05D005306 ORTHO05D006158 2.9e-31 140.2 242 40.1
Oeu032161.1 Olea europaea HOM05D005306 ORTHO05D006158 6.5e-31 139.0 209 43.5
Oeu032163.1 Olea europaea HOM05D005306 ORTHO05D006158 6.5e-31 139.0 209 43.5
Glyma.05G180000 Glycine max HOM05D005306 ORTHO05D006158 8.4e-31 138.7 323 35.9
Peaxi162Scf00422g00025 Petunia axillaris HOM05D005306 ORTHO05D006158 8.4e-31 138.7 351 32.5
Thhalv10004547m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 1.1e-30 138.3 340 33.5
Sopen04g024710 Solanum pennellii HOM05D005306 ORTHO05D006158 1.1e-30 138.3 366 30.6
THA.LOC104818490 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 1.1e-30 138.3 329 32.5
Cpa.g.sc20.237 Carica papaya HOM05D005306 ORTHO05D006158 1.9e-30 137.5 383 31.9
Cc07_g15400 Coffea canephora HOM05D005306 ORTHO05D006158 1.9e-30 137.5 183 43.2
PGSC0003DMG400020626 Solanum tuberosum HOM05D005306 ORTHO05D006158 1.9e-30 137.5 365 30.1
Solyc04g054900.3 Solanum lycopersicum HOM05D005306 ORTHO05D006158 2.5e-30 137.1 376 29.5
BcaC01g02741 Brassica carinata HOM05D005306 ORTHO05D006158 4.2e-30 136.3 338 32.0
C03p61010 Brassica napus HOM05D005306 ORTHO05D006158 4.2e-30 136.3 338 32.0
BolC3t18363H Brassica oleracea HOM05D005306 ORTHO05D006158 4.2e-30 136.3 338 32.0
Eucgr.H04811 Eucalyptus grandis HOM05D005306 ORTHO05D006158 4.2e-30 136.3 383 31.1
BraA06t26127Z Brassica rapa HOM05D005306 ORTHO05D006158 9.3e-30 135.2 328 32.9
Sp2g28200 Schrenkiella parvula HOM05D005306 ORTHO05D006158 1.2e-29 134.8 344 31.7
A06p31940 Brassica napus HOM05D005306 ORTHO05D006158 2.1e-29 134.0 328 33.2
RcHm_v2.0_Chr2g0115081 Rosa chinensis HOM05D005306 ORTHO05D006158 6.0e-29 132.5 346 32.1
MD01G1027000 Malus domestica HOM05D005306 ORTHO05D006158 7.9e-29 132.1 361 31.9
Aa31LG1G16850 Aethionema arabicum HOM05D005306 ORTHO05D006158 1.3e-28 131.3 342 32.2
C03p04880 Brassica napus HOM05D005306 ORTHO05D006158 1.3e-28 131.3 319 32.9
BolC3t13020H Brassica oleracea HOM05D005306 ORTHO05D006158 1.3e-28 131.3 319 32.9
Carub.0008s2596 Capsella rubella HOM05D005306 ORTHO05D006158 2.3e-28 130.6 339 32.4
Ah.02g122180 Amaranthus hybridus HOM05D005306 ORTHO05D006158 3.9e-28 129.8 342 31.0
Nn5g29063 Nelumbo nucifera HOM05D005306 ORTHO05D006158 3.9e-28 129.8 359 32.9
PSO210G6319 Papaver somniferum HOM05D005306 ORTHO05D006158 5.1e-28 129.4 181 41.4
BcaB02g09863 Brassica carinata HOM05D005306 ORTHO05D006158 8.7e-28 128.6 332 33.4
DCAR_014236 Daucus carota HOM05D005306 ORTHO05D006158 8.7e-28 128.6 326 33.7
Lsat_1_v5_gn_4_141700 Lactuca sativa HOM05D005306 ORTHO05D006158 8.7e-28 128.6 342 33.6
AUR62002025 Chenopodium quinoa HOM05D005306 ORTHO05D006158 1.1e-27 128.3 164 43.3
TAR381G0610 Trochodendron aralioides HOM05D005306 ORTHO05D006158 1.1e-27 128.3 379 30.6
BraA03t09786Z Brassica rapa HOM05D005306 ORTHO05D006158 1.5e-27 127.9 319 33.5
CAN.G113.1 Capsicum annuum HOM05D005306 ORTHO05D006158 1.5e-27 127.9 357 31.1
AL8G42620 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 1.9e-27 127.5 337 32.0
FAN23G1139 Fragaria x ananassa HOM05D005306 ORTHO05D006158 1.9e-27 127.5 342 31.9
CANSAT01G2249 Cannabis sativa HOM05D005306 ORTHO05D006158 2.5e-27 127.1 143 48.3
CARHR203180 Cardamine hirsuta HOM05D005306 ORTHO05D006158 5.7e-27 125.9 354 31.4
MD15G1327000 Malus domestica HOM05D005306 ORTHO05D006158 5.7e-27 125.9 247 36.0
ECA232G0837 Erigeron canadensis HOM05D005306 ORTHO05D006158 9.7e-27 125.2 192 41.1
FAN26G1901 Fragaria x ananassa HOM05D005306 ORTHO05D006158 9.7e-27 125.2 341 30.8
AT5G65120 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 1.3e-26 124.8 326 31.6
PGR102G1853 Punica granatum HOM05D005306 ORTHO05D006158 1.3e-26 124.8 311 34.4
FAN28G0785 Fragaria x ananassa HOM05D005306 ORTHO05D006158 1.6e-26 124.4 342 31.9
A03p04410 Brassica napus HOM05D005306 ORTHO05D006158 2.2e-26 124.0 143 48.3
AUR62003775 Chenopodium quinoa HOM05D005306 ORTHO05D006158 2.2e-26 124.0 148 46.6
Carub.0006s0857 Capsella rubella HOM05D005306 ORTHO05D006158 4.8e-26 122.9 322 32.0
FvH4_1g21240 Fragaria vesca HOM05D005306 ORTHO05D006158 6.3e-26 122.5 345 30.4
Sp6g33290 Schrenkiella parvula HOM05D005306 ORTHO05D006158 8.2e-26 122.1 141 46.8
Migut.H02371 Erythranthe guttata HOM05D005306 ORTHO05D006158 1.4e-25 121.3 169 40.8
Aqoxy6G00585 Aquilegia oxysepala HOM05D005306 ORTHO05D006158 2.0e-24 117.5 359 30.6
AT5G10110 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 2.6e-24 117.1 321 30.5
Nn1g05302 Nelumbo nucifera HOM05D005306 ORTHO05D006158 5.9e-24 115.9 367 30.8
Nitab4.5_0004120g0030 Nicotiana tabacum HOM05D005306 ORTHO05D006158 1.0e-23 115.2 340 29.7
C09p10370 Brassica napus HOM05D005306 ORTHO05D006158 1.3e-23 114.8 328 30.2
BolC9t53937H Brassica oleracea HOM05D005306 ORTHO05D006158 1.3e-23 114.8 328 30.2
HanXRQChr15g0484181 Helianthus annuus HOM05D005306 ORTHO05D006158 1.7e-23 114.4 199 38.2
AL6G20570 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 2.9e-23 113.6 335 29.6
MSTRG.23333 Avicennia marina HOM05D005306 ORTHO05D006158 3.8e-23 113.2 160 42.5
CARHR279030 Cardamine hirsuta HOM05D005306 ORTHO05D006158 1.4e-22 111.3 318 28.6
Nitab4.5_0000104g0330 Nicotiana tabacum HOM05D005306 ORTHO05D006158 1.4e-22 111.3 335 29.9
MSTRG.2558 Avicennia marina HOM05D005306 ORTHO05D006158 1.9e-22 110.9 187 39.0
BraA09t36544Z Brassica rapa HOM05D005306 ORTHO05D006158 3.2e-22 110.2 334 30.2
MBI05_g34472_MAGBIO Magnolia biondii HOM05D005306 ORTHO05D006158 7.2e-22 109.0 123 47.2
SalBow3G4455 Salvia bowleyana HOM05D005306 ORTHO05D006158 7.2e-22 109.0 169 37.9
BcaC04g23269 Brassica carinata HOM05D005306 ORTHO05D006158 9.4e-22 108.6 119 46.2
vmacro12947 Vaccinium macrocarpon HOM05D005306 ORTHO05D006158 1.2e-21 108.2 341 32.6
FAN19G0499 Fragaria x ananassa HOM05D005306 ORTHO05D006158 2.7e-21 107.1 327 30.0
BcaB04g20004 Brassica carinata HOM05D005306 ORTHO05D006158 3.6e-21 106.7 319 29.2
EL10Ac6g15084 Beta vulgaris HOM05D005306 ORTHO05D006158 3.9e-20 103.2 363 29.5
SGA_v2.0_scaffold47G17761 Striga asiatica HOM05D005306 ORTHO05D006158 5.1e-20 102.8 120 47.5
A09p08930 Brassica napus HOM05D005306 ORTHO05D006158 2.5e-19 100.5 303 30.4
Lsat_1_v5_gn_5_43440 Lactuca sativa HOM05D005306 ORTHO05D006158 7.4e-19 99.0 311 30.2
Os02g0752300 Oryza sativa ssp. japonica HOM05D005306 ORTHO05D006158 3.7e-18 96.7 177 33.3
Aa31LG3G17030 Aethionema arabicum HOM05D005306 ORTHO05D006158 6.9e-17 92.4 144 39.6
PSO447G0179 Papaver somniferum HOM05D005306 ORTHO05D006158 9.1e-17 92.0 131 43.5
Sed0017418 Sechium edule HOM05D005306 ORTHO05D006158 5.9e-16 89.4 123 45.5
THA.LOC104801720 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 5.9e-16 89.4 256 31.2
Sc16g0005560 Simmondsia chinensis HOM05D005306 ORTHO05D006158 1.0e-15 88.6 251 31.1
TWI74G0266 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 1.3e-15 88.2 159 34.6
Zm00001eb194230 Zea mays HOM05D005306 ORTHO05D006158 3.8e-15 86.7 115 40.9
ATR0564G355 Amborella trichopoda HOM05D005306 ORTHO05D006158 1.6e-13 81.3 114 42.1
CDE10G0726 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 2.1e-13 80.9 90 53.3
unitig_27.g25362 Utricularia gibba HOM05D033148 ORTHO05D006158 1.8e-12 77.8 102 43.1
Ah.03g142470 Amaranthus hybridus HOM05D005306 ORTHO05D006158 5.1e-12 76.3 106 38.7
Hund16271 Selenicereus undatus HOM05D005306 ORTHO05D006158 2.2e-10 70.9 173 34.1
SEGI_16914 Sequoiadendron giganteum HOM05D003400 ORTHO05D003687 9.1e-09 65.5 135 30.4
HPP92_004303 Vanilla planifolia HOM05D005306 ORTHO05D006158 9.1e-09 65.5 105 38.1
CDE04G0272 Ceratophyllum demersum HOM05D003400 ORTHO05D003687 3.2e-06 57.0 121 31.4


User provided reference genes

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