Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.H9FFKJ Arachis hypogaea HOM05D005120 ORTHO05D006174 3.9e-277 957.6 514 100.0
arahy.Tifrunner.gnm1.ann1.PMQ83Q Arachis hypogaea HOM05D005120 ORTHO05D006174 1.5e-265 919.1 507 98.0
Lalb_Chr16g0391911 Lupinus albus HOM05D005120 ORTHO05D006174 8.8e-213 743.8 514 80.9
Lj4g0011317 Lotus japonicus HOM05D005120 ORTHO05D006174 2.1e-206 722.6 510 79.2
Medtr8g070830 Medicago truncatula HOM05D005120 ORTHO05D006174 9.7e-204 713.8 457 84.5
Glyma.16G095100 Glycine max HOM05D005120 ORTHO05D006174 6.3e-203 711.1 450 84.4
CiPaw.11G101100 Carya illinoinensis HOM05D005120 ORTHO05D006174 7.7e-201 704.1 483 77.6
Cfa012552 Carpinus fangiana HOM05D005120 ORTHO05D006174 1.3e-200 703.4 445 83.6
TPR.G6179 Trifolium pratense HOM05D005120 ORTHO05D006174 2.2e-200 702.6 546 72.7
Phvul.003G274000 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 2.9e-200 702.2 449 83.5
Psat4g111760 Pisum sativum HOM05D005120 ORTHO05D006174 2.9e-200 702.2 502 76.7
CANSAT21G0750 Cannabis sativa HOM05D005120 ORTHO05D006174 3.2e-199 698.7 496 77.0
MD06G1023600 Malus domestica HOM05D005120 ORTHO05D006174 5.5e-199 698.0 439 83.8
QL12p000342 Quercus lobata HOM05D005120 ORTHO05D006174 5.5e-199 698.0 444 83.3
Prupe.5G024500 Prunus persica HOM05D005120 ORTHO05D006174 9.4e-199 697.2 507 76.1
VMungo0251G1066 Vigna mungo HOM05D005120 ORTHO05D006174 4.0e-197 691.8 447 82.3
Manes.17G006500 Manihot esculenta HOM05D005120 ORTHO05D006174 6.8e-197 691.0 491 76.2
Duzib205G1724 Durio zibethinus HOM05D005120 ORTHO05D006174 9.8e-196 687.2 478 76.2
PGR042G0860 Punica granatum HOM05D005120 ORTHO05D006174 1.3e-195 686.8 464 77.8
Eucgr.E01259 Eucalyptus grandis HOM05D005120 ORTHO05D006174 2.8e-195 685.6 444 80.4
Potri.003G099600 Populus trichocarpa HOM05D005120 ORTHO05D006174 4.8e-195 684.9 446 80.9
FAN08G2640 Fragaria x ananassa HOM05D005120 ORTHO05D006174 6.3e-195 684.5 443 81.9
Gohir.A03G000018 Gossypium hirsutum HOM05D005120 ORTHO05D006174 6.3e-195 684.5 505 73.3
Thhalv10007389m.g Eutrema salsugineum HOM05D005120 ORTHO05D006174 8.3e-195 684.1 527 72.7
Gorai.003G186700 Gossypium raimondii HOM05D005120 ORTHO05D006174 3.1e-194 682.2 504 73.2
Gohir.D03G177466 Gossypium hirsutum HOM05D005120 ORTHO05D006174 7.0e-194 681.0 504 73.2
BcaB03g13768 Brassica carinata HOM05D005120 ORTHO05D006174 1.6e-193 679.9 502 73.9
FvH4_5g23540 Fragaria vesca HOM05D005120 ORTHO05D006174 2.0e-193 679.5 443 81.3
Solyc08g076290.3 Solanum lycopersicum HOM05D005120 ORTHO05D006174 2.0e-193 679.5 456 78.1
Sopen08g024900 Solanum pennellii HOM05D005120 ORTHO05D006174 2.0e-193 679.5 456 78.1
BcaC05g27233 Brassica carinata HOM05D005120 ORTHO05D006174 2.7e-193 679.1 520 72.1
C05p31470 Brassica napus HOM05D005120 ORTHO05D006174 3.5e-193 678.7 520 72.1
ClCG07G002270 Citrullus lanatus HOM05D005120 ORTHO05D006174 3.5e-193 678.7 444 80.2
AT1G32080 Arabidopsis thaliana HOM05D005120 ORTHO05D006174 4.5e-193 678.3 520 71.7
BraA09t38958Z Brassica rapa HOM05D005120 ORTHO05D006174 4.5e-193 678.3 469 77.6
FAN18G1216 Fragaria x ananassa HOM05D005120 ORTHO05D006174 4.5e-193 678.3 443 81.0
RcHm_v2.0_Chr7g0212851 Rosa chinensis HOM05D005120 ORTHO05D006174 5.9e-193 677.9 444 80.9
Thecc.03G314000 Theobroma cacao HOM05D005120 ORTHO05D006174 5.9e-193 677.9 445 79.1
Sabra03G0067700 Salix brachista HOM05D005120 ORTHO05D006174 7.7e-193 677.6 446 80.5
BolC5t31871H Brassica oleracea HOM05D005120 ORTHO05D006174 1.0e-192 677.2 469 77.4
FAN18G2593 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.0e-192 677.2 443 80.8
TWI60G0565 Tripterygium wilfordii HOM05D005120 ORTHO05D006174 1.0e-192 677.2 444 80.2
CARHR031430 Cardamine hirsuta HOM05D005120 ORTHO05D006174 1.3e-192 676.8 526 72.4
FAN04G0205 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.3e-192 676.8 443 80.8
Ca_22546_v3 Cicer arietinum L. HOM05D005120 ORTHO05D006174 1.7e-192 676.4 406 87.7
CsaV3_3G030430 Cucumis sativus L. HOM05D005120 ORTHO05D006174 2.9e-192 675.6 444 79.5
Aa31LG2G13920 Aethionema arabicum HOM05D005120 ORTHO05D006174 5.0e-192 674.9 520 71.9
GSVIVG01029984001 Vitis vinifera HOM05D005120 ORTHO05D006174 5.0e-192 674.9 447 79.6
Nitab4.5_0000543g0120 Nicotiana tabacum HOM05D005120 ORTHO05D006174 6.6e-192 674.5 459 78.0
Cpa.g.sc757.1 Carica papaya HOM05D005120 ORTHO05D006174 1.5e-191 673.3 444 79.1
PGSC0003DMG402009291 Solanum tuberosum HOM05D005120 ORTHO05D006174 2.5e-191 672.5 436 80.5
MELO3C026723.2 Cucumis melo HOM05D005120 ORTHO05D006174 5.5e-191 671.4 444 78.8
BcaC05g27930 Brassica carinata HOM05D005120 ORTHO05D006174 9.5e-191 670.6 519 71.5
Sc07g0008440 Simmondsia chinensis HOM05D005120 ORTHO05D006174 9.5e-191 670.6 477 75.3
Carub.0001s3040 Capsella rubella HOM05D005120 ORTHO05D006174 1.2e-190 670.2 526 70.9
AL1G46150 Arabidopsis lyrata HOM05D005120 ORTHO05D006174 1.6e-190 669.8 517 71.8
THA.LOC104798500 Tarenaya hassleriana HOM05D005120 ORTHO05D006174 2.1e-190 669.5 527 71.9
Migut.A00586 Erythranthe guttata HOM05D005120 ORTHO05D006174 2.8e-190 669.1 494 72.5
Atru.chr6.1569 Acer truncatum HOM05D005120 ORTHO05D006174 3.6e-190 668.7 445 79.1
Haze_08107 Corylus avellana HOM05D005120 ORTHO05D006174 8.0e-190 667.5 547 70.0
BraA05t21413Z Brassica rapa HOM05D005120 ORTHO05D006174 1.4e-189 666.8 520 71.3
Sed0007636 Sechium edule HOM05D005120 ORTHO05D006174 3.0e-189 665.6 445 78.7
Cc08_g03980 Coffea canephora HOM05D005120 ORTHO05D006174 4.0e-189 665.2 521 69.5
COL.COLO4_16896 Corchorus olitorius HOM05D005120 ORTHO05D006174 4.0e-189 665.2 446 78.0
Sp1g27750 Schrenkiella parvula HOM05D005120 ORTHO05D006174 4.0e-189 665.2 444 79.1
Nitab4.5_0006395g0010 Nicotiana tabacum HOM05D005120 ORTHO05D006174 8.9e-189 664.1 421 82.2
TAR374G0846 Trochodendron aralioides HOM05D005120 ORTHO05D006174 3.4e-188 662.1 518 71.4
Rhsim11G0027600 Rhododendron simsii HOM05D005120 ORTHO05D006174 4.4e-188 661.8 460 77.4
Ah.07g201110 Amaranthus hybridus HOM05D005120 ORTHO05D006174 5.7e-188 661.4 523 68.8
MSTRG.11896 Avicennia marina HOM05D005120 ORTHO05D006174 9.8e-188 660.6 448 77.2
SGA_v2.0_scaffold42G16013 Striga asiatica HOM05D005120 ORTHO05D006174 9.8e-188 660.6 446 78.3
BcaB07g32869 Brassica carinata HOM05D005120 ORTHO05D006174 1.6e-185 653.3 521 71.4
Dinv29029 Davidia involucrata HOM05D005120 ORTHO05D006174 1.6e-185 653.3 430 79.3
SalBow1G1967 Salvia bowleyana HOM05D005120 ORTHO05D006174 3.5e-185 652.1 495 71.9
AUR62018612 Chenopodium quinoa HOM05D005120 ORTHO05D006174 1.0e-184 650.6 521 68.5
Oeu042231.1 Olea europaea HOM05D005120 ORTHO05D006174 2.9e-184 649.0 481 72.6
Peaxi162Scf00408g00023 Petunia axillaris HOM05D005120 ORTHO05D006174 2.9e-184 649.0 413 81.6
Glyma.01G009900 Glycine max HOM05D005120 ORTHO05D006174 1.1e-183 647.1 450 76.4
Nn1g01918 Nelumbo nucifera HOM05D005120 ORTHO05D006174 1.9e-183 646.4 469 75.3
C05p39360 Brassica napus HOM05D005120 ORTHO05D006174 4.3e-183 645.2 505 70.9
BolC5t32672H Brassica oleracea HOM05D005120 ORTHO05D006174 4.3e-183 645.2 505 70.9
Lsat_1_v5_gn_6_17781 Lactuca sativa HOM05D005120 ORTHO05D006174 7.3e-183 644.4 445 76.9
Sed0003941 Sechium edule HOM05D005120 ORTHO05D006174 7.3e-183 644.4 439 77.2
Aa31LG2G11060 Aethionema arabicum HOM05D005120 ORTHO05D006174 1.2e-182 643.7 432 78.7
Glyma.09G211200 Glycine max HOM05D005120 ORTHO05D006174 1.6e-182 643.3 450 76.4
Aqoxy7G00879 Aquilegia oxysepala HOM05D005120 ORTHO05D006174 2.8e-182 642.5 522 70.1
A05p25290 Brassica napus HOM05D005120 ORTHO05D006174 4.7e-182 641.7 506 70.9
Hund14388 Selenicereus undatus HOM05D005120 ORTHO05D006174 4.7e-182 641.7 454 74.9
vmacro00236 Vaccinium macrocarpon HOM05D005120 ORTHO05D006174 4.7e-182 641.7 445 77.5
MBI04_g36023_MAGBIO Magnolia biondii HOM05D005120 ORTHO05D006174 8.0e-182 641.0 521 69.1
Phvul.002G132800 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 2.3e-181 639.4 452 76.3
CAN.G773.16 Capsicum annuum HOM05D005120 ORTHO05D006174 4.0e-181 638.6 405 82.2
EL10Ac5g11981 Beta vulgaris HOM05D005120 ORTHO05D006174 1.2e-180 637.1 470 73.2
AUR62007376 Chenopodium quinoa HOM05D005120 ORTHO05D006174 2.6e-180 636.0 405 81.0
Actinidia27272 Actinidia chinensis HOM05D005120 ORTHO05D006174 4.4e-180 635.2 492 70.1
Lj8A318T44 Lonicera japonica HOM05D005120 ORTHO05D006174 4.4e-180 635.2 457 75.7
HanXRQChr02g0050021 Helianthus annuus HOM05D005120 ORTHO05D006174 2.9e-179 632.5 503 68.4
A09p34100 Brassica napus HOM05D005120 ORTHO05D006174 8.3e-179 630.9 441 76.9
SGA_v2.0_scaffold89G27426 Striga asiatica HOM05D005120 ORTHO05D006174 1.9e-178 629.8 490 70.6
CDE06G0533 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 2.0e-177 626.3 489 69.9
Os01g0511600 Oryza sativa ssp. japonica HOM05D005120 ORTHO05D006174 2.3e-173 612.8 433 73.9
ATR0829G037 Amborella trichopoda HOM05D005120 ORTHO05D006174 2.0e-172 609.8 443 73.4
ECA233G2235 Erigeron canadensis HOM05D005120 ORTHO05D006174 4.9e-171 605.1 440 73.2
Lalb_Chr16g0380871 Lupinus albus HOM05D005120 ORTHO05D006174 1.9e-170 603.2 451 71.2
PSO717G0011 Papaver somniferum HOM05D005120 ORTHO05D006174 1.6e-169 600.1 517 64.6
Nn3g19343 Nelumbo nucifera HOM05D005120 ORTHO05D006174 4.6e-169 598.6 470 69.4
Zm00001eb025160 Zea mays HOM05D005120 ORTHO05D006174 6.0e-169 598.2 502 65.7
Hund11160 Selenicereus undatus HOM05D005120 ORTHO05D006174 3.3e-167 592.4 474 68.1
PSO675G2578 Papaver somniferum HOM05D005120 ORTHO05D006174 2.8e-166 589.3 477 67.9
DCAR_004262 Daucus carota HOM05D005120 ORTHO05D006174 2.9e-163 579.3 463 68.5
Atru.chr6.1566 Acer truncatum HOM05D005120 ORTHO05D006174 4.6e-161 572.0 446 72.0
unitig_747.g21935 Utricularia gibba HOM05D005120 ORTHO05D006174 4.6e-161 572.0 444 68.9
CSS0018999 Camellia sinensis var. sinensis HOM05D005120 ORTHO05D006174 1.6e-158 563.5 421 73.6
arahy.Tifrunner.gnm1.ann1.1W9K9Y Arachis hypogaea HOM05D005120 ORTHO05D006174 9.3e-154 547.7 447 67.1
arahy.Tifrunner.gnm1.ann1.5B6WJ4 Arachis hypogaea HOM05D005120 ORTHO05D006174 9.3e-154 547.7 447 67.1
AagrBONN_evm.TU.Sc2ySwM_117.3701 Anthoceros agrestis HOM05D005120 ORTHO05D006174 6.9e-141 505.0 448 58.9
Pp3c1_16500 Physcomitrium patens HOM05D005120 ORTHO05D006174 8.7e-136 488.0 521 53.2
Mapoly0008s0007 Marchantia polymorpha HOM05D005120 ORTHO05D006174 1.9e-135 486.9 429 60.1
Actinidia01339 Actinidia chinensis HOM05D005120 ORTHO05D006174 4.2e-130 469.2 376 69.4
Ciclev10003461m.g Citrus clementina HOM05D005120 ORTHO05D006174 5.5e-122 442.2 349 68.2
SMO347G0341 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 2.8e-118 429.9 365 62.7
Dinv06901 Davidia involucrata HOM05D005120 ORTHO05D006174 2.3e-112 410.2 314 69.4
Atru.chr6.1568 Acer truncatum HOM05D005120 ORTHO05D006174 1.4e-104 384.4 230 87.8
arahy.Tifrunner.gnm1.ann1.B01XES Arachis hypogaea HOM05D005120 ORTHO05D006174 7.4e-103 378.6 300 74.0
PRCOL_00000663 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 1.5e-95 354.4 415 49.2
Lalb_Chr16g0380881 Lupinus albus HOM05D005120 ORTHO05D006174 1.4e-85 321.2 422 47.2
Atru.chr6.1567 Acer truncatum HOM05D005120 ORTHO05D006174 1.2e-84 318.2 217 76.0
FAN13G2921 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.3e-78 298.1 291 57.7
Cre09.g394850 Chlamydomonas reinhardtii HOM05D005120 ORTHO05D006174 8.0e-73 278.9 438 39.3
Glyma.08G265967 Glycine max HOM05D005120 ORTHO05D006174 8.0e-73 278.9 175 87.4
SMO367G1009 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 1.8e-69 267.7 386 38.6
CANSAT64G2484 Cannabis sativa HOM05D005120 ORTHO05D006174 1.2e-68 265.0 156 91.7
Pp3c4_7680 Physcomitrium patens HOM05D005120 ORTHO05D006174 2.3e-64 250.8 429 34.5
Zm00001eb025140 Zea mays HOM05D005120 ORTHO05D006174 5.8e-63 246.1 218 59.6
AagrBONN_evm.TU.Sc2ySwM_368.2516 Anthoceros agrestis HOM05D005120 ORTHO05D006174 8.9e-56 222.2 374 36.6
CBR_g23155 Chara braunii HOM05D005120 ORTHO05D006174 1.1e-53 215.3 162 69.1
PRCOL_00006607 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 2.1e-52 211.1 452 35.0
SEGI_09610 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 3.2e-37 160.6 126 61.1
PGR044G1750 Punica granatum HOM05D005120 ORTHO05D006174 1.2e-36 158.7 134 65.7
SEGI_28661 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 3.8e-30 137.1 132 62.1
CARHR291910 Cardamine hirsuta HOM05D005120 ORTHO05D006174 1.9e-26 124.8 84 73.8
CBR_g23153 Chara braunii HOM05D005120 ORTHO05D006174 8.1e-25 119.4 147 49.0
VMungo0647G0996 Vigna mungo HOM05D005120 ORTHO05D006174 2.4e-24 117.9 98 70.4
Oeu023967.3 Olea europaea HOM05D005120 ORTHO05D006174 3.5e-20 104.0 97 60.8
MCO13G610 Micromonas commoda HOM05D005120 ORTHO05D006174 1.1e-18 99.0 383 24.8
PRCOL_00001036 Prasinoderma coloniale HOM05D001145 ORTHO05D014381 3.4e-15 87.4 424 26.4
PRCOL_00005007 Prasinoderma coloniale HOM05D013059 ORTHO05D014381 1.0e-11 75.9 221 29.0
CDE03G0049 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 2.4e-08 64.7 67 55.2


User provided reference genes

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