Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.H9CC2T Arachis hypogaea HOM05D004964 ORTHO05D005918 4.0e-243 844.3 434 100.0
arahy.Tifrunner.gnm1.ann1.J3Q9FM Arachis hypogaea HOM05D004964 ORTHO05D005918 1.9e-232 808.9 434 96.3
Ca_14064_v3 Cicer arietinum L. HOM05D004964 ORTHO05D005918 2.4e-163 579.3 428 70.6
Lalb_Chr03g0040321 Lupinus albus HOM05D004964 ORTHO05D005918 1.0e-161 573.9 426 70.9
TPR.G33137 Trifolium pratense HOM05D004964 ORTHO05D005918 1.4e-158 563.5 427 70.0
Lj3g0015193 Lotus japonicus HOM05D004964 ORTHO05D005918 5.2e-158 561.6 428 70.6
TPR.G17496 Trifolium pratense HOM05D004964 ORTHO05D005918 2.4e-155 552.7 427 69.8
Phvul.010G051000 Phaseolus vulgaris HOM05D004964 ORTHO05D005918 3.2e-155 552.4 428 68.9
Medtr8g006785 Medicago truncatula HOM05D004964 ORTHO05D005918 7.1e-155 551.2 455 66.4
VMungo0331G1958 Vigna mungo HOM05D004964 ORTHO05D005918 3.0e-153 545.8 428 67.3
Glyma.03G113500 Glycine max HOM05D004964 ORTHO05D005918 4.7e-151 538.5 429 68.8
Glyma.07G113400 Glycine max HOM05D004964 ORTHO05D005918 2.6e-149 532.7 389 72.8
Psat4g225120 Pisum sativum HOM05D004964 ORTHO05D005918 1.3e-143 513.8 388 70.1
MD04G1230400 Malus domestica HOM05D004964 ORTHO05D005918 2.1e-119 433.3 433 52.7
Thecc.05G270700 Theobroma cacao HOM05D004964 ORTHO05D005918 1.3e-116 424.1 426 55.6
CiPaw.07G072600 Carya illinoinensis HOM05D004964 ORTHO05D005918 2.2e-116 423.3 430 55.1
Prupe.6G350300 Prunus persica HOM05D004964 ORTHO05D005918 3.5e-114 416.0 410 53.4
Cfa006356 Carpinus fangiana HOM05D004964 ORTHO05D005918 1.3e-113 414.1 427 54.6
QL03p029942 Quercus lobata HOM05D004964 ORTHO05D005918 2.3e-113 413.3 426 51.6
GSVIVG01023502001 Vitis vinifera HOM05D004964 ORTHO05D005918 3.0e-113 412.9 434 54.8
Manes.08G139500 Manihot esculenta HOM05D004964 ORTHO05D005918 5.7e-112 408.7 432 50.0
CSS0014360 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 6.3e-111 405.2 433 49.7
Gohir.D08G234400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 6.3e-111 405.2 427 54.6
QL03p029974 Quercus lobata HOM05D004964 ORTHO05D005918 1.8e-110 403.7 426 51.6
Gorai.004G249200 Gossypium raimondii HOM05D004964 ORTHO05D005918 5.3e-110 402.1 427 54.1
Cpa.g.sc162.40 Carica papaya HOM05D004964 ORTHO05D005918 9.0e-110 401.4 411 52.1
Duzib106G0302 Durio zibethinus HOM05D004964 ORTHO05D005918 2.0e-109 400.2 396 57.1
RcHm_v2.0_Chr3g0449661 Rosa chinensis HOM05D004964 ORTHO05D005918 2.6e-109 399.8 437 48.5
TAR362G0358 Trochodendron aralioides HOM05D004964 ORTHO05D005918 4.6e-106 389.0 438 49.3
Ciclev10020293m.g Citrus clementina HOM05D004964 ORTHO05D005918 6.1e-106 388.7 429 52.9
QL03p030425 Quercus lobata HOM05D004964 ORTHO05D005918 3.0e-105 386.3 407 52.3
Sed0000191 Sechium edule HOM05D004964 ORTHO05D005918 5.1e-105 385.6 429 52.2
FvH4_6g01921 Fragaria vesca HOM05D004964 ORTHO05D005918 8.8e-105 384.8 428 47.9
PGSC0003DMG401006195 Solanum tuberosum HOM05D004964 ORTHO05D005918 3.3e-104 382.9 424 48.8
Rhsim09G0136900 Rhododendron simsii HOM05D004964 ORTHO05D005918 7.4e-104 381.7 431 46.9
Sopen01g053470 Solanum pennellii HOM05D004964 ORTHO05D005918 9.7e-104 381.3 424 49.1
Solyc01g111410.3 Solanum lycopersicum HOM05D004964 ORTHO05D005918 1.3e-103 380.9 424 49.1
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 4.8e-103 379.0 427 47.8
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 6.3e-103 378.6 428 47.2
Cc02_g08800 Coffea canephora HOM05D004964 ORTHO05D005918 8.2e-103 378.3 436 49.5
CAN.G588.60 Capsicum annuum HOM05D004964 ORTHO05D005918 1.4e-102 377.5 423 48.0
MELO3C008708.2 Cucumis melo HOM05D004964 ORTHO05D005918 4.1e-102 375.9 430 51.4
Gohir.A08G217400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 5.3e-102 375.6 426 51.6
Lj2A43G39 Lonicera japonica HOM05D004964 ORTHO05D005918 4.5e-101 372.5 430 47.4
Atru.chr2.987 Acer truncatum HOM05D004964 ORTHO05D005918 1.7e-100 370.5 423 50.4
HanXRQChr07g0204481 Helianthus annuus HOM05D004964 ORTHO05D005918 1.1e-99 367.9 407 49.9
MBI07_g16903_MAGBIO Magnolia biondii HOM05D004964 ORTHO05D005918 3.2e-99 366.3 441 49.4
Nn4g26424 Nelumbo nucifera HOM05D004964 ORTHO05D005918 3.2e-99 366.3 435 45.3
Sabra13G0043100 Salix brachista HOM05D004964 ORTHO05D005918 1.4e-97 360.9 355 54.4
Oeu016533.1 Olea europaea HOM05D004964 ORTHO05D005918 8.8e-97 358.2 418 50.0
Thhalv10000880m.g Eutrema salsugineum HOM05D004964 ORTHO05D005918 8.2e-95 351.7 432 46.8
AL1G20790 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 2.4e-94 350.1 430 45.6
A09p21080 Brassica napus HOM05D004964 ORTHO05D005918 3.1e-94 349.7 430 45.8
Migut.F00800 Erythranthe guttata HOM05D004964 ORTHO05D005918 5.3e-94 349.0 426 49.3
A06p47210 Brassica napus HOM05D004964 ORTHO05D005918 7.0e-94 348.6 430 46.3
Peaxi162Scf00407g00626 Petunia axillaris HOM05D004964 ORTHO05D005918 1.2e-93 347.8 413 46.5
BraA09t37709Z Brassica rapa HOM05D004964 ORTHO05D005918 1.5e-93 347.4 430 48.1
BraA06t27592Z Brassica rapa HOM05D004964 ORTHO05D005918 2.0e-93 347.1 430 46.0
CANSAT01G0497 Cannabis sativa HOM05D004964 ORTHO05D005918 2.0e-93 347.1 398 52.0
Carub.0001s0952 Capsella rubella HOM05D004964 ORTHO05D005918 2.6e-93 346.7 431 45.2
CARHR010210 Cardamine hirsuta HOM05D004964 ORTHO05D005918 3.5e-93 346.3 408 47.8
BcaC06g34559 Brassica carinata HOM05D004964 ORTHO05D005918 5.9e-93 345.5 434 46.5
BolC7t43245H Brassica oleracea HOM05D004964 ORTHO05D005918 5.9e-93 345.5 434 46.5
C07p27180 Brassica napus HOM05D004964 ORTHO05D005918 3.8e-92 342.8 434 46.3
Aqoxy5G02134 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 5.0e-92 342.4 434 44.9
AT1G10095 Arabidopsis thaliana HOM05D004964 ORTHO05D005918 1.5e-91 340.9 406 47.8
Sc10g0001190 Simmondsia chinensis HOM05D004964 ORTHO05D005918 1.5e-91 340.9 392 48.2
Lsat_1_v5_gn_8_24860 Lactuca sativa HOM05D004964 ORTHO05D005918 1.6e-90 337.4 402 48.8
DCAR_022832 Daucus carota HOM05D004964 ORTHO05D005918 1.8e-89 334.0 425 47.5
PSO210G1919 Papaver somniferum HOM05D004964 ORTHO05D005918 1.8e-89 334.0 438 44.5
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 5.2e-89 332.4 428 44.4
Eucgr.H04227 Eucalyptus grandis HOM05D004964 ORTHO05D005918 1.5e-88 330.9 414 45.7
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 2.0e-88 330.5 428 43.9
BcaC06g31621 Brassica carinata HOM05D004964 ORTHO05D005918 3.3e-88 329.7 421 45.4
Aqoxy4G00649 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 4.4e-88 329.3 395 45.3
FAN14G5822 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.7e-87 327.4 428 43.7
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 8.2e-87 325.1 410 47.8
AUR62023306 Chenopodium quinoa HOM05D004964 ORTHO05D005918 1.1e-86 324.7 429 42.4
MSTRG.14348 Avicennia marina HOM05D004964 ORTHO05D005918 1.8e-86 323.9 421 47.5
unitig_46.g18500 Utricularia gibba HOM05D004964 ORTHO05D005918 2.0e-85 320.5 420 43.1
unitig_47.g30763 Utricularia gibba HOM05D004964 ORTHO05D005918 2.0e-85 320.5 420 43.1
BcaB07g30949 Brassica carinata HOM05D004964 ORTHO05D005918 2.2e-84 317.0 429 45.5
Hund13719 Selenicereus undatus HOM05D004964 ORTHO05D005918 5.0e-84 315.8 432 43.5
AUR62008995 Chenopodium quinoa HOM05D004964 ORTHO05D005918 1.5e-83 314.3 405 43.2
Nitab4.5_0013387g0040 Nicotiana tabacum HOM05D004964 ORTHO05D005918 2.5e-83 313.5 432 42.4
SGA_v2.0_scaffold26G11247 Striga asiatica HOM05D004964 ORTHO05D005918 5.5e-83 312.4 408 45.6
ECA233G3630 Erigeron canadensis HOM05D004964 ORTHO05D005918 9.4e-83 311.6 349 48.4
EL10Ac2g04577 Beta vulgaris HOM05D004964 ORTHO05D005918 3.6e-82 309.7 387 45.0
Sp2g09220 Schrenkiella parvula HOM05D004964 ORTHO05D005918 4.7e-82 309.3 371 46.6
CSS0038343 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 6.8e-81 305.4 418 44.5
COL.COLO4_00075 Corchorus olitorius HOM05D004964 ORTHO05D005918 6.8e-81 305.4 312 53.5
CsaV3_2G009770 Cucumis sativus L. HOM05D004964 ORTHO05D005918 8.8e-81 305.1 314 55.7
Dinv18988 Davidia involucrata HOM05D004964 ORTHO05D005918 4.8e-79 299.3 306 54.6
AL1G47560 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 4.1e-78 296.2 437 41.6
PSO210G0659 Papaver somniferum HOM05D004964 ORTHO05D005918 9.1e-78 295.0 384 44.5
ATR0736G161 Amborella trichopoda HOM05D004964 ORTHO05D005918 1.6e-77 294.3 440 41.8
vmacro10367 Vaccinium macrocarpon HOM05D004964 ORTHO05D005918 2.7e-77 293.5 514 37.0
HPP92_003061 Vanilla planifolia HOM05D004964 ORTHO05D005918 1.3e-76 291.2 401 43.6
Potri.013G047100 Populus trichocarpa HOM05D004964 ORTHO05D005918 4.4e-72 276.2 291 52.6
SGA_v2.0_scaffold177G39428 Striga asiatica HOM05D004964 ORTHO05D005918 2.2e-71 273.9 441 41.7
Nitab4.5_0005396g0030 Nicotiana tabacum HOM05D004964 ORTHO05D005918 9.5e-67 258.5 338 42.3
AL1G47570 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 1.2e-66 258.1 442 40.7
Hma1.2p1_1512F.1_g287895 Hydrangea macrophylla HOM05D004964 ORTHO05D005918 4.4e-64 249.6 254 53.9
MD12G1248000 Malus domestica HOM05D004964 ORTHO05D005918 2.2e-63 247.3 302 44.0
FAN09G0282 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.4e-57 228.0 262 49.6
AagrBONN_evm.TU.Sc2ySwM_340.245 Anthoceros agrestis HOM05D004964 ORTHO05D005918 1.8e-57 227.6 442 34.4
Zm00001eb229480 Zea mays HOM05D004964 ORTHO05D005918 2.9e-55 220.3 309 43.0
SalBow6G5984 Salvia bowleyana HOM05D004964 ORTHO05D005918 2.0e-53 214.2 496 31.5
AL1G20660 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 3.5e-53 213.4 417 35.7
Aa31LG1G4780 Aethionema arabicum HOM05D004964 ORTHO05D005918 1.3e-52 211.5 279 44.4
Pp3c7_7610 Physcomitrium patens HOM05D004964 ORTHO05D005918 3.0e-52 210.3 496 31.9
CARHR222860 Cardamine hirsuta HOM05D004964 ORTHO05D005918 1.9e-51 207.6 252 46.0
Ah.10g037790 Amaranthus hybridus HOM05D004964 ORTHO05D005918 2.3e-49 200.7 433 32.8
QL03p030145 Quercus lobata HOM05D004964 ORTHO05D005918 8.3e-47 192.2 157 54.8
BcaC04g21837 Brassica carinata HOM05D004964 ORTHO05D005918 1.9e-46 191.0 294 39.1
Mapoly0082s0051 Marchantia polymorpha HOM05D004964 ORTHO05D005918 5.4e-46 189.5 473 34.2
QL03p030368 Quercus lobata HOM05D004964 ORTHO05D005918 2.7e-45 187.2 228 49.6
Pp3c11_21460 Physcomitrium patens HOM05D004964 ORTHO05D005918 3.5e-45 186.8 416 33.4
TPR.G15846 Trifolium pratense HOM05D004964 ORTHO05D005918 3.6e-42 176.8 193 56.0
Os01g0684800 Oryza sativa ssp. japonica HOM05D004964 ORTHO05D005918 6.2e-42 176.0 248 41.1
QL03p030280 Quercus lobata HOM05D004964 ORTHO05D005918 6.2e-42 176.0 213 50.7
ClCG11G010620 Citrullus lanatus HOM05D004964 ORTHO05D005918 1.8e-41 174.5 191 46.1
arahy.Tifrunner.gnm1.ann1.A28SEL Arachis hypogaea HOM05D000231 ORTHO05D005918 2.3e-41 174.1 91 91.2
C09p26820 Brassica napus HOM05D004964 ORTHO05D005918 1.9e-38 164.5 297 36.0
SMO146G0189 Selaginella moellendorffii HOM05D004964 ORTHO05D005918 1.8e-33 147.9 336 32.7
CDE04G2937 Ceratophyllum demersum HOM05D004964 ORTHO05D005918 3.4e-32 143.7 188 48.9
TPR.G19618 Trifolium pratense HOM05D004964 ORTHO05D005918 1.1e-30 138.7 112 58.9
C07p27190 Brassica napus HOM05D004964 ORTHO05D005918 1.4e-30 138.3 245 40.8
BolC7t43246H Brassica oleracea HOM05D004964 ORTHO05D005918 1.4e-30 138.3 245 40.8
QL03p030283 Quercus lobata HOM05D004964 ORTHO05D005918 1.9e-30 137.9 162 40.1
MD12G1248600 Malus domestica HOM05D004964 ORTHO05D005918 8.7e-28 129.0 149 53.0
SHI23132 Sapria himalayana HOM05D000024 ORTHO05D000007 8.7e-28 129.0 122 57.4
Haze_04422 Corylus avellana HOM05D004964 ORTHO05D005918 1.1e-27 128.6 189 45.0
BolC9t55571H Brassica oleracea HOM05D004964 ORTHO05D005918 9.6e-27 125.6 186 37.6
Hund12147 Selenicereus undatus HOM05D004964 ORTHO05D005918 2.1e-26 124.4 215 36.7
CBR_g718 Chara braunii HOM05D004964 ORTHO05D005918 2.0e-24 117.9 244 32.0
Psat7g249360 Pisum sativum HOM05D001947 ORTHO05D021361 4.9e-23 113.2 77 74.0
Haze_04423 Corylus avellana HOM05D004964 ORTHO05D005918 2.1e-21 107.8 164 36.6
Aa31LG1G4790 Aethionema arabicum HOM05D004964 ORTHO05D005918 3.0e-20 104.0 128 40.6
SGA_v2.0_scaffold26G11248 Striga asiatica HOM05D004964 ORTHO05D005918 8.1e-18 95.9 196 32.1
Lsat_1_v5_gn_6_73440 Lactuca sativa HOM05D001771 ORTHO05D001876 1.4e-17 95.1 136 44.9
BolC9t55572H Brassica oleracea HOM05D004964 ORTHO05D005918 5.3e-17 93.2 99 52.5
QL03p030376 Quercus lobata HOM05D004964 ORTHO05D005918 2.0e-16 91.3 85 48.2
SEGI_14565 Sequoiadendron giganteum HOM05D004964 ORTHO05D005918 1.7e-15 88.2 166 36.1
CDE04G0768 Ceratophyllum demersum HOM05D004964 ORTHO05D005918 3.5e-13 80.5 164 29.9
RcHm_v2.0_Chr2g0095691 Rosa chinensis HOM05D004964 ORTHO05D005918 4.6e-13 80.1 66 59.1
SEGI_33500 Sequoiadendron giganteum HOM05D004964 ORTHO05D005918 1.8e-09 68.2 113 39.8
MD12G1248100 Malus domestica HOM05D004964 ORTHO05D005918 1.7e-07 61.6 85 45.9
Psat0s5010g0040 Pisum sativum HOM05D005021 ORTHO05D004273 8.4e-07 59.3 47 61.7
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 8.4e-07 59.3 45 64.4
Lsat_1_v5_gn_6_39820 Lactuca sativa HOM05D004964 ORTHO05D005918 4.2e-06 57.0 69 49.3


User provided reference genes

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