Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.H97TV8 Arachis hypogaea HOM05D004411 ORTHO05D005569 2.1e-48 195.3 93 100.0
arahy.Tifrunner.gnm1.ann1.7KL5HB Arachis hypogaea HOM05D004411 ORTHO05D005569 1.8e-23 112.5 84 67.9
arahy.Tifrunner.gnm1.ann1.01DGNM Arachis hypogaea HOM05D004411 ORTHO05D005569 6.8e-23 110.5 84 67.9
Glyma.08G313000 Glycine max HOM05D004411 ORTHO05D005569 2.7e-19 98.6 83 62.7
Glyma.09G101500 Glycine max HOM05D004411 ORTHO05D005569 2.7e-19 98.6 83 62.7
Medtr3g019330 Medicago truncatula HOM05D004411 ORTHO05D005569 6.0e-19 97.4 83 59.0
Psat5g216880 Pisum sativum HOM05D004411 ORTHO05D005569 2.3e-18 95.5 92 52.2
Ca_24447_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 1.1e-17 93.2 83 57.8
Ca_05663_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 1.5e-17 92.8 83 56.6
Lj6g0013350 Lotus japonicus HOM05D004411 ORTHO05D005569 4.3e-17 91.3 83 57.8
Lj2g0018498 Lotus japonicus HOM05D004411 ORTHO05D005569 7.3e-17 90.5 83 56.6
TPR.G3855 Trifolium pratense HOM05D004411 ORTHO05D005569 7.3e-17 90.5 102 50.0
Phvul.006G038300 Phaseolus vulgaris HOM05D004411 ORTHO05D005569 4.7e-16 87.8 81 58.0
arahy.Tifrunner.gnm1.ann1.DT6YRW Arachis hypogaea HOM05D004411 ORTHO05D005569 8.1e-16 87.0 94 54.3
CiPaw.11G186800 Carya illinoinensis HOM05D004411 ORTHO05D005569 4.0e-15 84.7 83 50.6
VMungo1383G2244 Vigna mungo HOM05D004411 ORTHO05D005569 8.9e-15 83.6 80 56.2
Glyma.08G318600 Glycine max HOM05D004411 ORTHO05D005569 2.0e-14 82.4 83 55.4
Lalb_Chr18g0049751 Lupinus albus HOM05D004411 ORTHO05D005569 4.4e-14 81.3 85 51.8
Medtr4g088440 Medicago truncatula HOM05D004411 ORTHO05D005569 1.3e-13 79.7 69 59.4
Lalb_Chr15g0080391 Lupinus albus HOM05D004411 ORTHO05D005569 1.7e-13 79.3 82 51.2
Oeu021397.1 Olea europaea HOM05D004411 ORTHO05D005569 1.7e-13 79.3 83 49.4
CiPaw.05G090700 Carya illinoinensis HOM05D004411 ORTHO05D005569 2.2e-13 79.0 83 48.2
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 2.2e-13 79.0 82 50.0
QL08p011929 Quercus lobata HOM05D004411 ORTHO05D005569 2.9e-13 78.6 83 49.4
QL08p012116 Quercus lobata HOM05D004411 ORTHO05D005569 2.9e-13 78.6 83 49.4
CANSAT56G2724 Cannabis sativa HOM05D004411 ORTHO05D005569 3.8e-13 78.2 104 38.5
Migut.H01843 Erythranthe guttata HOM05D004411 ORTHO05D005569 3.8e-13 78.2 83 49.4
MSTRG.12964 Avicennia marina HOM05D004411 ORTHO05D005569 1.1e-12 76.6 83 48.2
Eucgr.E01365 Eucalyptus grandis HOM05D004411 ORTHO05D005569 1.9e-12 75.9 83 47.0
Potri.011G136400 Populus trichocarpa HOM05D004411 ORTHO05D005569 1.9e-12 75.9 83 44.6
Duzib213G0043 Durio zibethinus HOM05D004411 ORTHO05D005569 2.4e-12 75.5 93 43.0
Atru.chr7.1306 Acer truncatum HOM05D004411 ORTHO05D005569 4.2e-12 74.7 83 45.8
CSS0013783 Camellia sinensis var. sinensis HOM05D004411 ORTHO05D005569 4.2e-12 74.7 83 47.0
SalBow7G1998 Salvia bowleyana HOM05D004411 ORTHO05D005569 4.2e-12 74.7 83 45.8
Atru.chr2.3274 Acer truncatum HOM05D004411 ORTHO05D005569 5.4e-12 74.3 83 47.0
Rhsim04G0000600 Rhododendron simsii HOM05D004411 ORTHO05D005569 5.4e-12 74.3 83 47.0
Hma1.2p1_0938F.1_g239200 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 7.1e-12 73.9 104 39.4
Dinv22283 Davidia involucrata HOM05D004411 ORTHO05D005569 1.2e-11 73.2 83 44.6
Oeu005458.1 Olea europaea HOM05D004411 ORTHO05D005569 1.2e-11 73.2 83 47.0
Oeu034511.1 Olea europaea HOM05D004411 ORTHO05D005569 1.6e-11 72.8 84 46.4
Sabra11G0122500 Salix brachista HOM05D004411 ORTHO05D005569 2.1e-11 72.4 83 42.2
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 2.7e-11 72.0 83 47.0
FAN21G4008 Fragaria x ananassa HOM05D004411 ORTHO05D005569 2.7e-11 72.0 83 45.8
Hma1.2p1_3713F.1_g337350 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 2.7e-11 72.0 83 44.6
Rhsim04G0001700 Rhododendron simsii HOM05D004411 ORTHO05D005569 2.7e-11 72.0 83 45.8
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 3.5e-11 71.6 83 44.6
unitig_0.g2388 Utricularia gibba HOM05D004411 ORTHO05D005569 3.5e-11 71.6 81 43.2
Actinidia35328 Actinidia chinensis HOM05D004411 ORTHO05D005569 4.6e-11 71.2 83 48.2
Cc02_g24710 Coffea canephora HOM05D004411 ORTHO05D005569 4.6e-11 71.2 83 45.8
RcHm_v2.0_Chr1g0330851 Rosa chinensis HOM05D004411 ORTHO05D005569 4.6e-11 71.2 83 44.6
FvH4_3g22120 Fragaria vesca HOM05D004411 ORTHO05D005569 6.0e-11 70.9 83 45.8
Dinv40733 Davidia involucrata HOM05D004411 ORTHO05D005569 7.8e-11 70.5 83 44.6
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 1.0e-10 70.1 83 44.6
TWI38G0098 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 1.0e-10 70.1 81 43.2
Cpa.g.sc12.166 Carica papaya HOM05D004411 ORTHO05D005569 1.3e-10 69.7 83 43.4
PGSC0003DMG402013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 1.3e-10 69.7 83 44.6
Peaxi162Scf00450g00868 Petunia axillaris HOM05D004411 ORTHO05D005569 1.7e-10 69.3 83 44.6
Prupe.4G208500 Prunus persica HOM05D004411 ORTHO05D005569 1.7e-10 69.3 83 44.6
Solyc07g064300.3 Solanum lycopersicum HOM05D004411 ORTHO05D005569 2.3e-10 68.9 83 44.6
HanXRQChr11g0336281 Helianthus annuus HOM05D004411 ORTHO05D005569 3.0e-10 68.6 83 42.2
Sc06g0005160 Simmondsia chinensis HOM05D004411 ORTHO05D005569 3.9e-10 68.2 83 47.0
vmacro09736 Vaccinium macrocarpon HOM05D004411 ORTHO05D005569 3.9e-10 68.2 82 43.9
GSVIVG01008286001 Vitis vinifera HOM05D004411 ORTHO05D005569 3.9e-10 68.2 83 42.2
Thecc.07G044400 Theobroma cacao HOM05D004411 ORTHO05D005569 5.1e-10 67.8 93 40.9
Ciclev10008629m.g Citrus clementina HOM05D004411 ORTHO05D005569 6.6e-10 67.4 83 44.6
Gohir.D01G064500 Gossypium hirsutum HOM05D004411 ORTHO05D005569 6.6e-10 67.4 84 45.2
Gorai.002G085400 Gossypium raimondii HOM05D004411 ORTHO05D005569 1.1e-09 66.6 77 46.8
EL10Ac9g22002 Beta vulgaris HOM05D004411 ORTHO05D005569 1.5e-09 66.2 80 45.0
RcHm_v2.0_Chr5g0037971 Rosa chinensis HOM05D004411 ORTHO05D005569 1.5e-09 66.2 83 43.4
ClCG10G005570 Citrullus lanatus HOM05D004411 ORTHO05D005569 1.9e-09 65.9 114 31.6
Nitab4.5_0000397g0320 Nicotiana tabacum HOM05D004411 ORTHO05D005569 1.9e-09 65.9 84 44.0
Manes.03G127300 Manihot esculenta HOM05D004411 ORTHO05D005569 2.5e-09 65.5 74 43.2
Sed0027425 Sechium edule HOM05D004411 ORTHO05D005569 2.5e-09 65.5 87 40.2
Gohir.A01G077000 Gossypium hirsutum HOM05D004411 ORTHO05D005569 3.3e-09 65.1 77 46.8
MELO3C003591.2 Cucumis melo HOM05D004411 ORTHO05D005569 5.6e-09 64.3 102 34.3
Nn1g07099 Nelumbo nucifera HOM05D004411 ORTHO05D005569 5.6e-09 64.3 67 46.3
PGR083G2632 Punica granatum HOM05D004411 ORTHO05D005569 5.6e-09 64.3 78 41.0
Nitab4.5_0009551g0010 Nicotiana tabacum HOM05D004411 ORTHO05D005569 7.3e-09 63.9 84 41.7
TAR624G0740 Trochodendron aralioides HOM05D004411 ORTHO05D005569 7.3e-09 63.9 87 40.2
CsaV3_3G017510 Cucumis sativus L. HOM05D004411 ORTHO05D005569 9.6e-09 63.5 102 33.3
PGSC0003DMG400013925 Solanum tuberosum HOM05D004411 ORTHO05D005569 9.6e-09 63.5 48 60.4
DCAR_008678 Daucus carota HOM05D004411 ORTHO05D005569 2.1e-08 62.4 76 43.4
ECA236G1785 Erigeron canadensis HOM05D004411 ORTHO05D005569 2.1e-08 62.4 76 40.8
SGA_v2.0_scaffold9G05058 Striga asiatica HOM05D004411 ORTHO05D005569 2.8e-08 62.0 104 34.6
TWI38G2195 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 4.8e-08 61.2 78 41.0
TAR627G0926 Trochodendron aralioides HOM05D004411 ORTHO05D005569 4.8e-08 61.2 87 37.9
AUR62000402 Chenopodium quinoa HOM05D004411 ORTHO05D005569 6.2e-08 60.8 76 42.1
AUR62006758 Chenopodium quinoa HOM05D004411 ORTHO05D005569 6.2e-08 60.8 76 42.1
arahy.Tifrunner.gnm1.ann1.ZM7UYF Arachis hypogaea HOM05D004411 ORTHO05D005569 8.1e-08 60.5 35 77.1
Hund07317 Selenicereus undatus HOM05D004411 ORTHO05D005569 8.1e-08 60.5 83 37.3
AT1G50910 Arabidopsis thaliana HOM05D004411 ORTHO05D005569 1.4e-07 59.7 87 35.6
CAN.G337.104 Capsicum annuum HOM05D004411 ORTHO05D005569 1.4e-07 59.7 83 43.4
Aa31LG10G3320 Aethionema arabicum HOM05D004411 ORTHO05D005569 2.4e-07 58.9 80 35.0
SHI31835 Sapria himalayana HOM05D004411 ORTHO05D005569 2.4e-07 58.9 83 38.6
Lsat_1_v5_gn_7_109101 Lactuca sativa HOM05D004411 ORTHO05D005569 4.0e-07 58.2 68 44.1
AL1G58640 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 9.0e-07 57.0 87 34.5
AL2G19790 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 9.0e-07 57.0 87 34.5
AL8G37460 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 9.0e-07 57.0 87 34.5
Carub.0001s3986 Capsella rubella HOM05D004411 ORTHO05D005569 9.0e-07 57.0 87 34.5
Thhalv10011488m.g Eutrema salsugineum HOM05D004411 ORTHO05D005569 9.0e-07 57.0 84 34.5
THA.LOC104798777 Tarenaya hassleriana HOM05D004411 ORTHO05D005569 9.0e-07 57.0 55 45.5
CDE07G0547 Ceratophyllum demersum HOM05D004411 ORTHO05D005569 1.2e-06 56.6 48 52.1
Sp1g37650 Schrenkiella parvula HOM05D004411 ORTHO05D005569 1.2e-06 56.6 86 31.4
DCAR_011015 Daucus carota HOM05D004411 ORTHO05D005569 2.0e-06 55.8 86 37.2


User provided reference genes

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