Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.H8VZ0K Arachis hypogaea HOM05D005357 ORTHO05D006354 1.8e-309 1065.1 525 100.0
arahy.Tifrunner.gnm1.ann1.5ZZ6F4 Arachis hypogaea HOM05D005357 ORTHO05D006354 6.6e-248 860.5 454 95.2
Glyma.07G144300 Glycine max HOM05D005357 ORTHO05D006354 1.7e-203 713.0 438 81.3
Glyma.18G195500 Glycine max HOM05D005357 ORTHO05D006354 4.3e-199 698.4 440 80.5
Phvul.008G108800 Phaseolus vulgaris HOM05D005357 ORTHO05D006354 3.1e-197 692.2 440 80.0
Lalb_Chr01g0022881 Lupinus albus HOM05D005357 ORTHO05D006354 6.7e-192 674.5 443 79.2
Lalb_Chr03g0042941 Lupinus albus HOM05D005357 ORTHO05D006354 2.5e-183 646.0 442 75.8
Medtr7g066710 Medicago truncatula HOM05D005357 ORTHO05D006354 7.4e-183 644.4 441 76.4
Lj3g0024478 Lotus japonicus HOM05D005357 ORTHO05D006354 6.3e-182 641.3 443 78.1
Medtr7g056183 Medicago truncatula HOM05D005357 ORTHO05D006354 5.3e-181 638.3 442 75.8
Ca_09168_v3 Cicer arietinum L. HOM05D005357 ORTHO05D006354 4.2e-178 628.6 442 76.2
TPR.G1557 Trifolium pratense HOM05D005357 ORTHO05D006354 1.5e-162 577.0 392 75.3
QL07p036221 Quercus lobata HOM05D005357 ORTHO05D006354 7.7e-156 554.7 495 62.2
CiPaw.09G205000 Carya illinoinensis HOM05D005357 ORTHO05D006354 5.0e-155 552.0 495 61.0
Cfa017262 Carpinus fangiana HOM05D005357 ORTHO05D006354 1.8e-152 543.5 497 61.8
Thecc.05G023500 Theobroma cacao HOM05D005357 ORTHO05D006354 1.5e-143 513.8 490 59.2
COL.COLO4_14619 Corchorus olitorius HOM05D005357 ORTHO05D006354 8.3e-142 508.1 487 57.7
CANSAT35G1827 Cannabis sativa HOM05D005357 ORTHO05D006354 1.8e-141 506.9 481 59.9
Haze_20938 Corylus avellana HOM05D005357 ORTHO05D006354 1.8e-141 506.9 494 59.7
Duzib093G0024 Durio zibethinus HOM05D005357 ORTHO05D006354 1.5e-135 487.3 489 57.3
Duzib106G1773 Durio zibethinus HOM05D005357 ORTHO05D006354 1.7e-134 483.8 495 56.2
Ciclev10011563m.g Citrus clementina HOM05D005357 ORTHO05D006354 2.9e-134 483.0 500 57.6
Gohir.A09G163000 Gossypium hirsutum HOM05D005357 ORTHO05D006354 7.0e-133 478.4 488 56.6
VMungo1383G1762 Vigna mungo HOM05D005357 ORTHO05D006354 7.0e-133 478.4 322 75.2
Gohir.D09G158500 Gossypium hirsutum HOM05D005357 ORTHO05D006354 9.2e-133 478.0 480 56.0
Psat3g131000 Pisum sativum HOM05D005357 ORTHO05D006354 1.6e-132 477.2 357 72.3
Prupe.6G269500 Prunus persica HOM05D005357 ORTHO05D006354 4.6e-132 475.7 479 57.8
Actinidia13789 Actinidia chinensis HOM05D005357 ORTHO05D006354 1.7e-131 473.8 492 54.3
TWI77G0073 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 8.6e-131 471.5 499 54.1
Duzib128G1243 Durio zibethinus HOM05D005357 ORTHO05D006354 1.9e-130 470.3 486 54.5
Dinv37091 Davidia involucrata HOM05D005357 ORTHO05D006354 2.5e-130 469.9 499 56.1
Gorai.006G180200 Gossypium raimondii HOM05D005357 ORTHO05D006354 3.3e-130 469.5 480 56.5
ClCG10G021740 Citrullus lanatus HOM05D005357 ORTHO05D006354 9.5e-130 468.0 486 55.8
CsaV3_3G034230 Cucumis sativus L. HOM05D005357 ORTHO05D006354 9.5e-130 468.0 467 56.7
Manes.08G086900 Manihot esculenta HOM05D005357 ORTHO05D006354 1.8e-128 463.8 493 55.8
Actinidia29139 Actinidia chinensis HOM05D005357 ORTHO05D006354 4.0e-128 462.6 491 54.2
TAR633G0560 Trochodendron aralioides HOM05D005357 ORTHO05D006354 1.2e-127 461.1 522 54.0
MELO3C009198.2 Cucumis melo HOM05D005357 ORTHO05D006354 1.5e-127 460.7 459 56.6
MD12G1159000 Malus domestica HOM05D005357 ORTHO05D006354 9.8e-127 458.0 474 57.6
Potri.006G095600 Populus trichocarpa HOM05D005357 ORTHO05D006354 9.8e-127 458.0 496 56.2
RcHm_v2.0_Chr3g0463991 Rosa chinensis HOM05D005357 ORTHO05D006354 1.1e-125 454.5 474 57.4
Nitab4.5_0006254g0010 Nicotiana tabacum HOM05D005357 ORTHO05D006354 1.2e-124 451.1 497 53.9
Hma1.2p1_0703F.1_g206335 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 1.6e-124 450.7 493 54.4
MD04G1145200 Malus domestica HOM05D005357 ORTHO05D006354 1.0e-123 448.0 473 57.3
FvH4_6g12190 Fragaria vesca HOM05D005357 ORTHO05D006354 3.0e-123 446.4 474 56.8
FAN09G0023 Fragaria x ananassa HOM05D005357 ORTHO05D006354 3.0e-123 446.4 474 56.8
FAN14G1666 Fragaria x ananassa HOM05D005357 ORTHO05D006354 3.0e-123 446.4 474 56.8
FAN14G2781 Fragaria x ananassa HOM05D005357 ORTHO05D006354 3.0e-123 446.4 474 56.8
TWI74G0304 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 6.6e-123 445.3 387 63.3
Cpa.g.sc312.3 Carica papaya HOM05D005357 ORTHO05D006354 1.9e-122 443.7 490 55.1
EL10As5g23477 Beta vulgaris HOM05D005357 ORTHO05D006354 4.3e-122 442.6 449 57.7
FAN05G3392 Fragaria x ananassa HOM05D005357 ORTHO05D006354 7.3e-122 441.8 474 56.3
Sed0007832 Sechium edule HOM05D005357 ORTHO05D006354 3.1e-120 436.4 391 61.1
FAN02G3235 Fragaria x ananassa HOM05D005357 ORTHO05D006354 4.0e-120 436.0 449 58.4
Nn1g02852 Nelumbo nucifera HOM05D005357 ORTHO05D006354 2.6e-119 433.3 517 52.0
Peaxi162Scf00141g00133 Petunia axillaris HOM05D005357 ORTHO05D006354 7.6e-119 431.8 500 53.2
Eucgr.B02762 Eucalyptus grandis HOM05D005357 ORTHO05D006354 1.7e-118 430.6 500 52.2
TAR636G3085 Trochodendron aralioides HOM05D005357 ORTHO05D006354 2.2e-118 430.3 419 58.2
CAN.G284.13 Capsicum annuum HOM05D005357 ORTHO05D006354 1.1e-117 427.9 495 52.5
Gohir.A04G087700 Gossypium hirsutum HOM05D005357 ORTHO05D006354 1.6e-116 424.1 374 62.8
Gorai.012G111100 Gossypium raimondii HOM05D005357 ORTHO05D006354 6.0e-116 422.2 387 61.5
Nitab4.5_0000008g0560 Nicotiana tabacum HOM05D005357 ORTHO05D006354 4.3e-114 416.0 495 51.5
Ah.11g049570 Amaranthus hybridus HOM05D005357 ORTHO05D006354 4.7e-113 412.5 448 56.2
Lj2A78G31 Lonicera japonica HOM05D005357 ORTHO05D006354 1.4e-112 411.0 468 54.7
AUR62024704 Chenopodium quinoa HOM05D005357 ORTHO05D006354 1.5e-111 407.5 445 53.3
AUR62011861 Chenopodium quinoa HOM05D005357 ORTHO05D006354 9.9e-111 404.8 444 53.2
PGR031G1436 Punica granatum HOM05D005357 ORTHO05D006354 2.2e-110 403.7 514 49.2
Cc06_g01760 Coffea canephora HOM05D005357 ORTHO05D006354 2.4e-109 400.2 499 50.1
GSVIVG01034021001 Vitis vinifera HOM05D005357 ORTHO05D006354 6.0e-108 395.6 437 52.2
SalBow3G4061 Salvia bowleyana HOM05D005357 ORTHO05D006354 1.0e-107 394.8 484 51.4
PGSC0003DMG402020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 5.1e-107 392.5 456 51.5
MBI06_g17209_MAGBIO Magnolia biondii HOM05D005357 ORTHO05D006354 6.6e-107 392.1 520 48.8
MSTRG.5603 Avicennia marina HOM05D005357 ORTHO05D006354 7.3e-106 388.7 495 51.5
Gohir.D04G128100 Gossypium hirsutum HOM05D005357 ORTHO05D006354 1.6e-105 387.5 387 58.4
vmacro01296 Vaccinium macrocarpon HOM05D005357 ORTHO05D006354 6.2e-105 385.6 481 50.1
Sabra06G0073400 Salix brachista HOM05D005357 ORTHO05D006354 5.8e-103 379.0 593 45.2
Sopen09g006960 Solanum pennellii HOM05D005357 ORTHO05D006354 1.3e-102 377.9 448 52.0
Migut.J00234 Erythranthe guttata HOM05D005357 ORTHO05D006354 4.9e-102 375.9 470 51.5
Hund02920 Selenicereus undatus HOM05D005357 ORTHO05D006354 8.4e-102 375.2 440 53.0
Hund09607 Selenicereus undatus HOM05D005357 ORTHO05D006354 3.2e-101 373.2 441 52.2
THA.LOC104827038 Tarenaya hassleriana HOM05D005357 ORTHO05D006354 3.0e-99 366.7 423 52.0
Aqoxy1G00739 Aquilegia oxysepala HOM05D005357 ORTHO05D006354 8.4e-94 348.6 400 54.0
Aa31LG1G22800 Aethionema arabicum HOM05D005357 ORTHO05D006354 1.8e-91 340.9 447 48.3
HPP92_021066 Vanilla planifolia HOM05D005357 ORTHO05D006354 6.7e-91 339.0 409 50.4
SGA_v2.0_scaffold85G26772 Striga asiatica HOM05D005357 ORTHO05D006354 9.6e-90 335.1 469 48.6
PSO384G3148 Papaver somniferum HOM05D005357 ORTHO05D006354 1.6e-89 334.3 480 43.1
PSO585G0030 Papaver somniferum HOM05D005357 ORTHO05D006354 2.0e-87 327.4 477 43.8
Carub.0006s0073 Capsella rubella HOM05D005357 ORTHO05D006354 7.6e-87 325.5 444 46.4
DCAR_005589 Daucus carota HOM05D005357 ORTHO05D006354 1.1e-85 321.6 508 43.5
Sc05g0000650 Simmondsia chinensis HOM05D005357 ORTHO05D006354 1.2e-84 318.2 320 57.8
Sp6g40520 Schrenkiella parvula HOM05D005357 ORTHO05D006354 1.0e-83 315.1 439 45.1
Dinv03649 Davidia involucrata HOM05D005357 ORTHO05D006354 3.0e-83 313.5 402 49.5
Oeu044369.1 Olea europaea HOM05D005357 ORTHO05D006354 8.7e-83 312.0 479 43.0
A10p33610 Brassica napus HOM05D005357 ORTHO05D006354 1.6e-81 307.8 448 45.1
Oeu030537.4 Olea europaea HOM05D005357 ORTHO05D006354 2.8e-81 307.0 455 45.3
AL6G11040 Arabidopsis lyrata HOM05D005357 ORTHO05D006354 3.7e-81 306.6 445 46.3
SGA_v2.0_scaffold75G24995 Striga asiatica HOM05D005357 ORTHO05D006354 4.8e-81 306.2 290 59.0
CARHR211480 Cardamine hirsuta HOM05D005357 ORTHO05D006354 3.1e-80 303.5 373 51.2
AT5G01160 Arabidopsis thaliana HOM05D005357 ORTHO05D006354 9.0e-80 302.0 371 49.3
BcaNung02762 Brassica carinata HOM05D005357 ORTHO05D006354 1.2e-79 301.6 440 45.2
Thhalv10014073m.g Eutrema salsugineum HOM05D005357 ORTHO05D006354 1.2e-79 301.6 369 51.5
C09p74540 Brassica napus HOM05D005357 ORTHO05D006354 2.2e-78 297.4 367 50.4
BolC9t60186H Brassica oleracea HOM05D005357 ORTHO05D006354 2.9e-78 297.0 367 50.4
CDE04G3126 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 3.8e-78 296.6 394 47.2
BcaB05g21942 Brassica carinata HOM05D005357 ORTHO05D006354 2.5e-77 293.9 381 48.8
HanXRQChr13g0406371 Helianthus annuus HOM05D005357 ORTHO05D006354 4.6e-76 289.7 435 44.4
BraA10t45393Z Brassica rapa HOM05D005357 ORTHO05D006354 2.3e-75 287.3 447 43.0
Glyma.18G195800 Glycine max HOM05D005357 ORTHO05D006354 8.7e-75 285.4 207 69.1
Atru.chr8.2135 Acer truncatum HOM05D005357 ORTHO05D006354 9.7e-74 282.0 382 49.2
Os10g0494500 Oryza sativa ssp. japonica HOM05D005357 ORTHO05D006354 5.0e-70 269.6 390 44.1
ECA248G2096 Erigeron canadensis HOM05D005357 ORTHO05D006354 6.5e-70 269.2 437 45.3
CSS0020158 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 1.9e-69 267.7 384 46.9
unitig_22.g6590 Utricularia gibba HOM05D005357 ORTHO05D006354 2.5e-69 267.3 471 41.0
BcaNung02766 Brassica carinata HOM05D005357 ORTHO05D006354 1.0e-67 261.9 401 43.1
CDE03G0086 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 1.0e-67 261.9 415 44.1
Lsat_1_v5_gn_5_155380 Lactuca sativa HOM05D005357 ORTHO05D006354 1.4e-67 261.5 437 45.3
Zm00001eb044800 Zea mays HOM05D005357 ORTHO05D006354 1.3e-65 255.0 438 41.8
PGSC0003DMG400002411 Solanum tuberosum HOM05D005357 ORTHO05D006354 9.4e-61 238.8 381 42.3
Zm00001eb221140 Zea mays HOM05D005357 ORTHO05D006354 1.5e-58 231.5 256 52.3
Solyc09g013120.4 Solanum lycopersicum HOM05D005357 ORTHO05D006354 1.4e-56 224.9 345 44.6
HanXRQChr13g0397571 Helianthus annuus HOM05D005357 ORTHO05D006354 2.4e-56 224.2 401 40.4
HanXRQChr13g0397921 Helianthus annuus HOM05D005357 ORTHO05D006354 2.4e-56 224.2 289 46.4
SEGI_31043 Sequoiadendron giganteum HOM05D005357 ORTHO05D006354 8.0e-52 209.1 175 57.1
SHI12776 Sapria himalayana HOM05D005357 ORTHO05D006354 1.8e-51 208.0 424 41.0
Atru.chr8.2134 Acer truncatum HOM05D005357 ORTHO05D006354 2.7e-44 184.1 108 83.3
DCAR_008325 Daucus carota HOM05D005357 ORTHO05D006354 1.4e-43 181.8 240 43.8
ATR0605G041 Amborella trichopoda HOM05D005357 ORTHO05D006354 5.9e-39 166.4 359 38.7
Mapoly0068s0057 Marchantia polymorpha HOM05D005357 ORTHO05D006354 1.8e-32 144.8 205 39.5
Pp3c20_10060 Physcomitrium patens HOM05D005357 ORTHO05D006354 1.8e-32 144.8 220 40.0
Pp3c23_4130 Physcomitrium patens HOM05D005357 ORTHO05D006354 4.1e-32 143.7 208 38.9
Hma1.2p1_0125F.1_g058510 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 3.5e-31 140.6 344 33.1
Pp3c8_18230 Physcomitrium patens HOM05D005357 ORTHO05D006354 5.6e-29 133.3 168 41.1
Oeu055280.1 Olea europaea HOM05D005357 ORTHO05D006354 1.3e-25 122.1 203 39.9
CBR_g24154 Chara braunii HOM05D005357 ORTHO05D006354 1.7e-25 121.7 111 46.8
PGSC0003DMG401020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 6.4e-25 119.8 122 54.9
SEGI_08495 Sequoiadendron giganteum HOM05D054687 ORTHO05D006354 3.5e-23 114.0 370 31.6
CSS0030830 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 1.1e-21 109.0 68 79.4
Rhsim01G0256700 Rhododendron simsii HOM05D005357 ORTHO05D004574 5.4e-16 90.1 150 38.7
RcHm_v2.0_Chr3g0492291 Rosa chinensis HOM05D005357 ORTHO05D006354 1.9e-08 65.1 52 71.2
Oeu020881.1 Olea europaea HOM05D005357 ORTHO05D006354 2.7e-07 61.2 75 46.7


User provided reference genes

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