Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.H54SCY Arachis hypogaea HOM05D005099 ORTHO05D006087 9.8e-95 350.1 178 100.0
arahy.Tifrunner.gnm1.ann1.L8YWMY Arachis hypogaea HOM05D005099 ORTHO05D006087 4.9e-94 347.8 178 99.4
VMungo1309G2116 Vigna mungo HOM05D005099 ORTHO05D006087 2.9e-46 189.1 190 58.9
Glyma.09G042500 Glycine max HOM05D005099 ORTHO05D006087 4.9e-46 188.3 188 61.2
Thecc.04G288600 Theobroma cacao HOM05D005099 ORTHO05D006087 1.1e-45 187.2 196 57.1
Ciclev10006010m.g Citrus clementina HOM05D005099 ORTHO05D006087 4.2e-45 185.3 192 60.4
Hma1.2p1_0804F.1_g221070 Hydrangea macrophylla HOM05D005099 ORTHO05D006087 4.2e-45 185.3 188 58.0
Glyma.15G150400 Glycine max HOM05D005099 ORTHO05D006087 5.5e-45 184.9 190 56.8
Medtr2g435810 Medicago truncatula HOM05D005099 ORTHO05D006087 5.5e-45 184.9 190 57.4
Medtr2g436150 Medicago truncatula HOM05D005099 ORTHO05D006087 5.5e-45 184.9 190 57.4
Duzib212G0134 Durio zibethinus HOM05D005099 ORTHO05D006087 7.1e-45 184.5 189 56.1
Haze_01169 Corylus avellana HOM05D005099 ORTHO05D006087 3.5e-44 182.2 185 56.2
Duzib151G0929 Durio zibethinus HOM05D005099 ORTHO05D006087 1.0e-43 180.6 197 54.3
Phvul.009G250300 Phaseolus vulgaris HOM05D005099 ORTHO05D006087 1.8e-43 179.9 190 57.9
ClCG06G004980 Citrullus lanatus HOM05D005099 ORTHO05D006087 8.7e-43 177.6 187 57.8
Cfa015424 Carpinus fangiana HOM05D005099 ORTHO05D006087 2.5e-42 176.0 188 53.7
COL.COLO4_13826 Corchorus olitorius HOM05D005099 ORTHO05D006087 2.1e-41 172.9 196 53.6
MELO3C021313.2 Cucumis melo HOM05D005099 ORTHO05D006087 6.2e-41 171.4 193 56.0
CsaV3_6G023860 Cucumis sativus L. HOM05D005099 ORTHO05D006087 6.2e-41 171.4 192 55.2
CSS0011820 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 1.4e-40 170.2 184 53.8
CiPaw.01G145600 Carya illinoinensis HOM05D005099 ORTHO05D006087 1.8e-40 169.9 190 55.3
Dinv44353 Davidia involucrata HOM05D005099 ORTHO05D006087 2.4e-40 169.5 195 53.3
QL06p010333 Quercus lobata HOM05D005099 ORTHO05D006087 2.4e-40 169.5 199 56.8
Manes.15G010800 Manihot esculenta HOM05D005099 ORTHO05D006087 5.3e-40 168.3 182 50.5
Atru.chr4.2896 Acer truncatum HOM05D005099 ORTHO05D006087 6.9e-40 167.9 197 53.8
TAR365G0602 Trochodendron aralioides HOM05D005099 ORTHO05D006087 3.4e-39 165.6 199 56.8
Prupe.1G124100 Prunus persica HOM05D005099 ORTHO05D006087 4.5e-39 165.2 187 58.3
TWI73G1062 Tripterygium wilfordii HOM05D005099 ORTHO05D006087 4.5e-39 165.2 200 56.5
CANSAT78G2455 Cannabis sativa HOM05D005099 ORTHO05D006087 7.6e-39 164.5 198 52.5
FvH4_4g18620 Fragaria vesca HOM05D005099 ORTHO05D006087 4.9e-38 161.8 192 52.6
FAN12G1484 Fragaria x ananassa HOM05D005099 ORTHO05D006087 4.9e-38 161.8 192 52.6
FAN12G1671 Fragaria x ananassa HOM05D005099 ORTHO05D006087 4.9e-38 161.8 192 52.6
Rhsim02G0007200 Rhododendron simsii HOM05D005099 ORTHO05D006087 4.9e-38 161.8 185 53.0
Nn3g21536 Nelumbo nucifera HOM05D005099 ORTHO05D006087 6.5e-38 161.4 185 49.7
Psat1g155760 Pisum sativum HOM05D005099 ORTHO05D006087 1.1e-37 160.6 197 50.8
Actinidia14282 Actinidia chinensis HOM05D005099 ORTHO05D006087 1.4e-37 160.2 185 52.4
Gohir.D02G055600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 1.4e-37 160.2 183 50.3
Gorai.005G061600 Gossypium raimondii HOM05D005099 ORTHO05D006087 1.4e-37 160.2 183 50.3
Potri.008G219500 Populus trichocarpa HOM05D005099 ORTHO05D006087 1.9e-37 159.8 196 49.5
MD16G1164800 Malus domestica HOM05D005099 ORTHO05D006087 2.5e-37 159.5 190 51.1
Sabra08G0151700 Salix brachista HOM05D005099 ORTHO05D006087 3.2e-37 159.1 194 49.5
RcHm_v2.0_Chr4g0423321 Rosa chinensis HOM05D005099 ORTHO05D006087 4.2e-37 158.7 197 52.8
Sed0019517 Sechium edule HOM05D005099 ORTHO05D006087 4.2e-37 158.7 187 54.5
Lj6g0002623 Lotus japonicus HOM05D005099 ORTHO05D006087 5.5e-37 158.3 188 56.9
Gohir.A02G050700 Gossypium hirsutum HOM05D005099 ORTHO05D006087 7.1e-37 157.9 183 49.7
Manes.03G198300 Manihot esculenta HOM05D005099 ORTHO05D006087 2.7e-36 156.0 190 50.5
Potri.010G010600 Populus trichocarpa HOM05D005099 ORTHO05D006087 4.6e-36 155.2 196 50.0
TAR362G0212 Trochodendron aralioides HOM05D005099 ORTHO05D006087 6.0e-36 154.8 186 48.9
FAN17G2615 Fragaria x ananassa HOM05D005099 ORTHO05D006087 7.9e-36 154.5 189 54.5
arahy.Tifrunner.gnm1.ann1.2UKM1V Arachis hypogaea HOM05D005099 ORTHO05D006087 1.3e-35 153.7 187 52.4
FAN07G0877 Fragaria x ananassa HOM05D005099 ORTHO05D006087 1.3e-35 153.7 190 55.3
CiPaw.02G080200 Carya illinoinensis HOM05D005099 ORTHO05D006087 3.0e-35 152.5 190 55.8
arahy.Tifrunner.gnm1.ann1.2F59RJ Arachis hypogaea HOM05D005099 ORTHO05D006087 6.7e-35 151.4 187 51.9
vmacro15214 Vaccinium macrocarpon HOM05D005099 ORTHO05D006087 1.9e-34 149.8 180 51.7
Peaxi162Scf00065g00138 Petunia axillaris HOM05D005099 ORTHO05D006087 4.3e-34 148.7 203 46.8
Lalb_Chr20g0117371 Lupinus albus HOM05D005099 ORTHO05D006087 7.4e-34 147.9 194 48.5
THA.LOC104827334 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 7.4e-34 147.9 199 50.3
Dinv29728 Davidia involucrata HOM05D005099 ORTHO05D006087 3.7e-33 145.6 184 48.9
Oeu006417.1 Olea europaea HOM05D005099 ORTHO05D006087 3.7e-33 145.6 181 50.8
Sabra10G0006200 Salix brachista HOM05D005099 ORTHO05D006087 3.7e-33 145.6 195 47.7
CARHR081450 Cardamine hirsuta HOM05D005099 ORTHO05D006087 1.1e-32 144.1 192 49.0
Nn4g25764 Nelumbo nucifera HOM05D005099 ORTHO05D006087 1.4e-32 143.7 185 47.6
Cc03_g01550 Coffea canephora HOM05D005099 ORTHO05D006087 1.2e-31 140.6 194 45.9
EL10Ac3g06640 Beta vulgaris HOM05D005099 ORTHO05D006087 1.5e-31 140.2 192 48.4
AUR62015274 Chenopodium quinoa HOM05D005099 ORTHO05D006087 3.4e-31 139.0 188 48.4
Aqoxy2G02900 Aquilegia oxysepala HOM05D005099 ORTHO05D006087 4.5e-31 138.7 194 52.1
CAN.G14.36 Capsicum annuum HOM05D005099 ORTHO05D006087 5.9e-31 138.3 197 44.7
Oeu033813.1 Olea europaea HOM05D005099 ORTHO05D006087 5.9e-31 138.3 188 47.9
AUR62018071 Chenopodium quinoa HOM05D005099 ORTHO05D006087 1.7e-30 136.7 188 47.9
Sopen01g028090 Solanum pennellii HOM05D005099 ORTHO05D006087 1.7e-30 136.7 190 46.3
AT3G06840 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 2.2e-30 136.3 192 44.8
MBI18_g04556_MAGBIO Magnolia biondii HOM05D005099 ORTHO05D006087 2.9e-30 136.0 179 48.0
CSS0049831 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 3.8e-30 135.6 183 48.1
PGR004G0666 Punica granatum HOM05D005099 ORTHO05D006087 3.8e-30 135.6 195 47.7
Sed0015120 Sechium edule HOM05D005099 ORTHO05D006087 3.8e-30 135.6 183 46.4
Solyc01g066440.3 Solanum lycopersicum HOM05D005099 ORTHO05D006087 5.0e-30 135.2 190 48.4
PGSC0003DMG400011309 Solanum tuberosum HOM05D005099 ORTHO05D006087 5.0e-30 135.2 188 47.9
SalBow2G2334 Salvia bowleyana HOM05D005099 ORTHO05D006087 1.1e-29 134.0 181 47.5
MD13G1165200 Malus domestica HOM05D005099 ORTHO05D006087 1.9e-29 133.3 194 51.5
Eucgr.H03959 Eucalyptus grandis HOM05D005099 ORTHO05D006087 3.2e-29 132.5 213 44.1
AL3G17960 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 5.5e-29 131.7 193 45.1
MSTRG.3894 Avicennia marina HOM05D005099 ORTHO05D006087 7.2e-29 131.3 187 44.9
Nitab4.5_0000695g0110 Nicotiana tabacum HOM05D005099 ORTHO05D006087 7.2e-29 131.3 197 46.7
Sc13g0003250 Simmondsia chinensis HOM05D005099 ORTHO05D006087 7.2e-29 131.3 186 42.5
HanXRQChr17g0536041 Helianthus annuus HOM05D005099 ORTHO05D006087 9.3e-29 131.0 184 43.5
Aa31LG5G17420 Aethionema arabicum HOM05D005099 ORTHO05D006087 1.6e-28 130.2 192 45.8
Gohir.D09G238500 Gossypium hirsutum HOM05D005099 ORTHO05D006087 1.6e-28 130.2 194 45.4
Nitab4.5_0003767g0020 Nicotiana tabacum HOM05D005099 ORTHO05D006087 2.1e-28 129.8 197 46.7
Gohir.A09G237600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 2.7e-28 129.4 211 44.5
PSO407G0003 Papaver somniferum HOM05D005099 ORTHO05D006087 1.8e-27 126.7 204 42.6
SGA_v2.0_scaffold67G22601 Striga asiatica HOM05D005099 ORTHO05D006087 1.8e-27 126.7 181 45.3
Oeu053996.1 Olea europaea HOM05D005099 ORTHO05D006087 2.3e-27 126.3 183 45.9
Sp3g05800 Schrenkiella parvula HOM05D005099 ORTHO05D006087 3.9e-27 125.6 191 46.1
Thhalv10021591m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 5.1e-27 125.2 194 43.3
Carub.0003s0637 Capsella rubella HOM05D005099 ORTHO05D006087 1.1e-26 124.0 191 43.5
Hund24882 Selenicereus undatus HOM05D005099 ORTHO05D006087 2.5e-26 122.9 195 41.5
Thhalv10004959m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 7.4e-26 121.3 210 43.8
BNapus_Darmor_BZH_scaffold_117p00120 Brassica napus HOM05D005099 ORTHO05D006087 1.7e-25 120.2 194 45.4
BraA01t04411Z Brassica rapa HOM05D005099 ORTHO05D006087 1.7e-25 120.2 194 45.4
THA.LOC104818909 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 1.7e-25 120.2 213 46.0
Ah.13g074810 Amaranthus hybridus HOM05D005099 ORTHO05D006087 2.2e-25 119.8 176 43.2
Gorai.006G261200 Gossypium raimondii HOM05D005099 ORTHO05D006087 2.8e-25 119.4 208 43.8
BcaC09g47923 Brassica carinata HOM05D005099 ORTHO05D006087 8.2e-25 117.9 193 45.1
BolC1t05583H Brassica oleracea HOM05D005099 ORTHO05D006087 8.2e-25 117.9 193 45.1
Lsat_1_v5_gn_3_21720 Lactuca sativa HOM05D005099 ORTHO05D006087 1.1e-24 117.5 193 47.7
Migut.G00130 Erythranthe guttata HOM05D005099 ORTHO05D006087 5.3e-24 115.2 186 45.7
PSO170G0513 Papaver somniferum HOM05D005099 ORTHO05D006087 1.5e-23 113.6 206 40.8
DCAR_002480 Daucus carota HOM05D005099 ORTHO05D006087 2.0e-23 113.2 194 39.7
ECA246G4673 Erigeron canadensis HOM05D005099 ORTHO05D006087 7.7e-23 111.3 200 41.0
Cpa.g.sc50.167 Carica papaya HOM05D005099 ORTHO05D006087 2.9e-22 109.4 117 51.3
Sp2g19520 Schrenkiella parvula HOM05D005099 ORTHO05D006087 3.8e-22 109.0 199 43.2
ATR0693G064 Amborella trichopoda HOM05D005099 ORTHO05D006087 1.1e-21 107.5 182 39.6
DCAR_023299 Daucus carota HOM05D005099 ORTHO05D006087 1.9e-21 106.7 184 41.8
CARHR182490 Cardamine hirsuta HOM05D005099 ORTHO05D006087 3.6e-20 102.4 195 42.1
HanXRQChr06g0173741 Helianthus annuus HOM05D005099 ORTHO05D006087 3.0e-19 99.4 183 37.2
AT5G49170 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 8.8e-19 97.8 204 41.2
BraA06t26768Z Brassica rapa HOM05D005099 ORTHO05D006087 2.0e-18 96.7 199 43.2
SHI00249 Sapria himalayana HOM05D005099 ORTHO05D006087 2.0e-18 96.7 192 35.4
AL8G22700 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 7.4e-18 94.7 207 38.2
Carub.0008s0899 Capsella rubella HOM05D005099 ORTHO05D006087 1.3e-17 94.0 208 42.8
BraA02t08775Z Brassica rapa HOM05D005099 ORTHO05D006087 2.2e-17 93.2 182 41.8
BcaB07g34138 Brassica carinata HOM05D005099 ORTHO05D006087 2.8e-17 92.8 182 41.8
BcaC03g17704 Brassica carinata HOM05D005099 ORTHO05D006087 2.8e-17 92.8 182 42.3
C02p57110 Brassica napus HOM05D005099 ORTHO05D006087 2.8e-17 92.8 182 42.3
BolC2t11783H Brassica oleracea HOM05D005099 ORTHO05D006087 2.8e-17 92.8 182 42.3
Nitab4.5_0011001g0010 Nicotiana tabacum HOM05D005099 ORTHO05D006087 2.8e-17 92.8 181 37.0
A02p37910 Brassica napus HOM05D005099 ORTHO05D006087 4.8e-17 92.0 182 41.8
Nn7g36563 Nelumbo nucifera HOM05D005099 ORTHO05D006087 6.3e-17 91.7 82 53.7
BcaNung02585 Brassica carinata HOM05D005099 ORTHO05D006087 2.4e-16 89.7 219 39.7
BolC7t44497H Brassica oleracea HOM05D005099 ORTHO05D006087 2.4e-16 89.7 219 39.7
BcaC06g30711 Brassica carinata HOM05D005099 ORTHO05D006087 9.1e-16 87.8 224 37.1
Sc19g0005440 Simmondsia chinensis HOM05D005099 ORTHO05D006087 1.5e-15 87.0 183 39.9
C07p39730 Brassica napus HOM05D005099 ORTHO05D006087 5.9e-15 85.1 207 39.1
Oeu035687.1 Olea europaea HOM05D005099 ORTHO05D006087 7.7e-15 84.7 200 35.0
GSVIVG01035110001 Vitis vinifera HOM05D005099 ORTHO05D006087 1.3e-14 84.0 93 55.9
A06p38540 Brassica napus HOM05D005099 ORTHO05D006087 1.7e-14 83.6 222 38.7
Sopen05g032840 Solanum pennellii HOM05D005099 ORTHO05D006087 6.5e-14 81.6 182 36.8
Lj6P680T81 Lonicera japonica HOM05D005099 ORTHO05D006087 2.5e-13 79.7 57 68.4
HPP92_011860 Vanilla planifolia HOM05D005099 ORTHO05D006087 2.5e-13 79.7 176 35.8
Actinidia00002 Actinidia chinensis HOM05D005099 ORTHO05D006087 1.2e-12 77.4 38 86.8
Lalb_Chr15g0086051 Lupinus albus HOM05D005099 ORTHO05D006087 2.7e-12 76.3 84 57.1
BcaC06g30713 Brassica carinata HOM05D005099 ORTHO05D006087 1.8e-11 73.6 71 56.3
MD13G1165100 Malus domestica HOM05D005099 ORTHO05D006087 3.3e-10 69.3 79 57.0
Nitab4.5_0001097g0130 Nicotiana tabacum HOM05D005099 ORTHO05D006087 3.7e-09 65.9 148 34.5
CSS0025062 Camellia sinensis var. sinensis HOM05D001728 ORTHO05D004321 2.9e-06 56.2 182 31.9


User provided reference genes

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